CmoCh20G000790.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATAAAAACACAGATAATATTTGGATAGAGCAAGGTAACCGAAACCCAAACTGAAACAAAAAGTGTAAACTTTCTTGAACGATTTTCCTAAACATCTTTTCTTCTCGCCAGCGAAGATTCTCACACGCGCGCACTCGCGCACTCAAATTCCTCTAATCCATTTTGCAACTGAAGAAAACAAAACAGTTTTCTAATCCTATTATATAGTGCTTCTGTAGCGGCGGCAAGTTCCTCGCCGCTTACAGAATTCAGTCATCTCCTTCACTTGCGCGCGTAGTATCCCTTGAACATTTCTCTCTCTATTGCTATCTTTCTGTCGCCAATTTCTCTGAATTTGGAAGGTTTTAAAAGCCCTCGAGTATTTCGGGGGTTCCACACTGTTCTTACCGATACAACTCTACAAGACCTCCATGGCTTCTCAGGTGTTGGTAGCTCTTGCACTTTCGCTTCTGGGGGGATTCAGTACTTCTCTAGGTTAGTCAAGTTTATTCTCGTTATATGCTCTGTGGGTCTGGTTTCAATTCAGAATTATCTCATGGATTCTTAGCGGACCTCACTGGGTACTTGCCTGGGTTTTCTTTTCTTCCTTTCTTGTTTCTTTTTTTATTTTCGTTTGTTCTTCATTCTTGATTATCTTTGGTTACATTTTGAAGTATTTGTCAATTGGGCCTTGAGACCAAATTTAATATGAAATGTTTCTTGGATTCGATATGTCAAGAAGTAAATTGATGTTTGGCAAGTTAGTTGGGATTGTTCTTTATCTAGTCTTTACAGTCTCGAAATCGTGAATGTTACATGGTTACAATATATCTATCTGGTTATGAGGTTTTGAAGTCGGCTTTTGAAAATCCTGGGAAAATTTACTGCTGTTCTTATATAGATGATCGTTTTCTAGTTCTGAGTTCTTAGAACTCAAGGACACAGGTGCATAACCCTATAGAACAGATCTTGTACCATATTCTTCATTGCCGAAAACCCAGTTACCCCCGTTTTTGTTCACCGGCTACAGTGCCCATTCTTGTAGACAAGAGCACCTCAAAGTCATTCTCACGGCCTTGTTGAATTCATTCATTGGTCTCGTATGATTAACTTGTAATTTCTATTTTCCACAACTTCTTTTGTTTCATTGTGTGAAATTAGTTTTACGAGTCCTGTTGTACACAATCGTTACTTCCAACTTTCCATTATCCATGCTTAATTTTGACAAAGAAGAACCAGCATGGTCTCTTTCCTCTCTCTCTGTACGGGGCTTGGAACTTAATTATTTACAATTTTAGTGGCATAGTGTCCATATTGAGCCTTGACACCTTCTTATCACTTCTGGTCCATTAGCATTTTAAAGCATCAGACTCATTTCTATTCTAACATTTGGAACAGGTGCACTTTTTGTGATTCTTAGCGGAGCCCCAAATTTGAAGATGCTCGGTCTTTTACAGGTGATGCTTGGAGGTTTCCTTTTTTGATTCTTTTGGGGATGGGGGATAGCTTTGTAGCATAAATCAACCCTAGAATATTGTTCAATTGTGGTGATGAAAGGCTAAACGTTTTCTTATCTGTTATTTTTACTTCGTTGTCCATGAAATTGACTACAATACCTTATCGTTGCTATATGATTATATCATTCCTTACAGCTCGGTGTGCCTATTTTGGACCATGTGGATTCTTCCTCGATCTCTTTAGAAAATTTTAAAATAAAAGAAAGAGAGGAAAAGAAAGAAAGAAAGTGTAAAACATAGATTAGAAAAAGGAAGAAGAAGAATAAAGAAGATGAAGAAAGGGGCACTGCCTTACCTTTAACAAAGGTGGAAACTGTGCCTTTTCTTCTTCTCTCCTGTTCCTTTTACCCATCTTCGAAGGAATGGAATATTTTCTGAGATTGAATCCAATTGGAACCACAACTCTTTCTAATTGTAGTAATTTAGCATGAATTTTGGTAGCTCAAGTTTATATTTGGGTCACTCGTGCAATATAGTATTCACTTCTTCTAAGTTTAAAATAATCATAATTCTTGCAATAAGGAGTGTTGTTAAATACATCATTTTGTTACCATGTGGGCATTAACTTATATGTTAATTTCAGTTCTACTCTATGGATTAGTCTAAATCACCGAGTCTGAAATGCAGGGCTTTGCTGCAGGTTTAATGTTGAGCATTTCGTTCCTGGATTTAGCTCATAATGCGATTAACTCAATTGGATTCTTAAAAGGAAATCTTTGGGTAAATAATTATTCAGCATTTCATCTGATACATGTCATGAGTCTTTATTGAATGATTTCAGTACTTGTACATTCATGAAGTGTCTTTTTATCCGTACTGCAGTTTTTTGCAGGTGTTATCTTCTTTGCATTTGTTGCTCATTTTATCCCAGAACCCACACTTGCTCCTGGTTCAGATACCAAACGTAAGAAGGTTGTAACTATTCTCGTTTAAACTCACTTTCTGCTCCTTAAAGCATTCTTAGAAAGAGTAATATTAATTTATCTAGAGTTTGACTCTCTATGTTGGATAATAGGACGATGACGAAGGGGGGAAGGACATTATGAAAAAGCATCGCCGTCAGGTTCTGTTCAGTGGCATAATAACAGCAATAGGTATATACATATACAACTGTCATGTATAAATGGTACAAGTTTATATTCTCTAACAATTTGTCCAAGAAGCAAGAACATCGTTAATTTAGTCTAATGAAATGCAGGAATAAGTTTACATAATTTTCCAGAAGGAATGGCTGTCTTTCTTGGATCAATTAAGGTACACCTCAGCATAACCCTTCTTAAATTGAAATGGGATAATGTAGTTTGATCTCAGCTTAAAGAACTCAAATAATAAACTTCATAAAAGGTATTTATTTTCTGCTTAACAAAACTGTAAATGCCTTCATGTTGGAATGTTGCTTATTCATTTATATGAACGAGCCCTATTGAATTCAATATTTTCATTGGTGATAGTTAAAATTTTGGTTTTTCTGAGCCCTATTGCTTATAATTGCTGACACCAATCAATTTCTTTTTAATTTTATGTAGGGCCTTCGTGTTGGTCTAAACTTAGCCTTAGCCATTGCCTTGCACAACATACCAGAGGTATTTATTTTCTTGTTACATAGCCTACATTACGCTTTTCTCTGGAAATAGGTGTCCATATCATTTTAGCATTTTTCTTCATTGGATTACCTGGACTTAATAACCTGATGCTGGGTGCAACCAGATAGTTTTTGAATAAATATTTATTAGTGCCTCTCGTTGGTATGATTCTATCCATCAGTTTATTTGGGCTTTGATTGACGCTGGTGGGATAAAAATTTAGGGAAATGCCACATGGAAATTATCTATGTTAGGTCTTGACTCTTGTAATATTATGCAGGGTATAGCTGTTGCGCTTCCTGTTTATTTTGCTACACAGAGGTTAGTGAATAATTTCAGTTTATGTTATGAATTGGGGTAAACTCAAAATTTTCATGCTTTCGTTAATCATTTCCTCTCATATGAAATGTGTTGTCGACTGACTCAATTTCCAATGAATTTCCCTCAATCAAATTGTAAGTTTTAGAAACATTTAGATGATGGGTTCAAGTTTTGTTGTTGGTCACTTACGAAATTTTTTACCCCAAATATTGTTAGTTCAAGCCGTTATCATTACCTCTCAAGTCTTCCAAGCCCACTGCTAGCAAATATTGTCCTCTTTGGGCTTTTCCTTTTGGGCTTCCCTTCAAGGTTTTCAAGGTTTTAAACACTGAGCAATGTGTTAGTAAGGACGTTGGGCCTCCAAGAGGGGTGGATTGTGAAATCCCACATCGGTTGGAGAGGAGAATGATGCCTTATAAAGGTGTGGAATCCCCTCCCTGGCAGACTCGTTTTAAAAACCTTAAGGGAAAACCCAAAAAGGAAAGCCCAAATAGGACAATATTTGCTATATGTGGGCTTGGACTGGCATGTTTTTTCACATCTTTACCTTGTCCAATTTAAAGGATTGAATATGGTTAATTTCTTGTTGTTTTTTGTGCTCAGCAAATGGCAGGCATTCAAGTTGGCTACTCTCTCTGGTTTTGCTGAGCCCCTCGGTGTTGTAATTGTAGGTAAGTCCAACTGCACTAAAGAGACGCTGAATCTAGATGTTCTTTCGCTGAAAATGTAAGCTGAATTTCCAAAGTGTTACGCATGCATTATTATAATGTAAGAGTAAGTGCCGTTAATGATGTGTGAACATCAATTTTAGATAGGGATATCATTTTCTGGCTTAAAGTATGATCTATTTCGACCAAATGCATTGATAATACTGGCAGATTTGTTATATGGTGTTTAACTTGGGACTTGTAACCAATGCCTTGAAGGGGACACATGGAATGTTCAGTATTTAACTGCATTTTTTCTGCAGCCTACTTATTTCCAAGCAGCTTGAGTCCTGAAATTCTGGAAGGTCTACTAGGATCTGGTATTGCAAAACAGAGTACTTGACTTAGAAATTGAAGGAAGACATTTTTTATCCTTTGGACATTGTTTTATTCTATTTATTTCATGCTTTCAGTTGGCGGAATAATGGCGTTTCTAACTCTGCATGAAATGCTGCCTTTGGCATTTGATTATGCTGGACAGAAGCAAGCTGTGAAGGTCGTCTTCTTAGGAATGGCTTGTATGTCTGCAAGGTAAGAAAACATGGGAAGAAGTAGCCGACCATCTTGATGCATTACTCCTTTTCTTTTCCTGCATGTTAAACAAAATTTTCCATTAAAATTCACAGCCTTCTATGTAGTTATGTTAATGACAATCTGCTCTGGTATCCATTAAAATTTGAACTGATGAAAACAACTTAACCTTATGATCCTTGCTGAGATGAAAGTGAATTAACTTCTTAAATTCCCCCTATTGCTGTTAATTTCTACCATGGTTTCTGGGTTTGTTATGTTTCTAATTTCTTCCTTGAATGTGTGACATCTCACATCAATTGGAGAGGAGAATGAAACATTCCTTATAAGGATGTGGAAATCTCTCCCCAATAAACGCATTTTAAAAACCTTGAGAGAAAGCCTAAAGAGGACAATATCTGCTAGTGGTGGGCTTGGACTGTTATAAATGGTATCCCAGCTAGATATTGGGCGATGTGCCATCGAGGACGCTGAGCCTCCAAGGGGGTGGATTGTGAGATCTCTCATTGGTTGGAGAAGGAACGAAGTATTCCTTATAAGGGTGTGGAAACCTTTCTCCAACAGACGTGTTTTAAAAACCTTGAGAAGCCCGGAAGGGAAAGCCCAAAGAGAATAATATTTGCTAGCGATGAACTTGGGTTTTTACCCCATGTTAATGATTAATGCTTCAATTCCACTTCCACTCTTGAGCACCCTGCCTCTCGGAAGGAGGAAAATGGAAGCCAGAGTAGTAAAAAAATGAAAGATTCTTTGAACAAGGGTAATTCACCCAAGTTATTGCCTGATGTCGAATAATTTTGTGAAAAGCATACTTGGAGTAATTACGAGCTTTCACTTGCTAAATCTTGAATCTTGTTCATTCGTTAAGGGATAAAAAGAAAATGAAAGAAAAACAGTTAGGTTGGACGCGCATTTGGCTCTTTCAACAATATGCTGCTTTGTTTCTTTCTACTTGATTTATAATGTATCTAATGCCACAATCTCACTGGTTTTGCAGCCTTTATTTTCTGGAAATCAGCCTGCCGGAGGATTTGAGCTTGTAGTTACCTTTCTCTTCTGTTCCTTGCCATTTCTGTGTTGTAAATTTTCTGGAAAAAAAAGAACATGGGGAATAAAGGGTTACCATTTCTGTGTTACCTGTCATTTGCCTCAACAAGCACACAGCCCCCTTCCATAAAAATGTCAATTCCGTGTAAAAAGTTGAACTCTTCACCTTATCAGAGTGAAAAATGAATGGAATTGGTTTACTTGTTGATCTCAA TATAAAAACACAGATAATATTTGGATAGAGCAAGGTAACCGAAACCCAAACTGAAACAAAAAGTGTAAACTTTCTTGAACGATTTTCCTAAACATCTTTTCTTCTCGCCAGCGAAGATTCTCACACGCGCGCACTCGCGCACTCAAATTCCTCTAATCCATTTTGCAACTGAAGAAAACAAAACAGTTTTCTAATCCTATTATATAGTGCTTCTGTAGCGGCGGCAAGTTCCTCGCCGCTTACAGAATTCAGTCATCTCCTTCACTTGCGCGCGTAGTATCCCTTGAACATTTCTCTCTCTATTGCTATCTTTCTGTCGCCAATTTCTCTGAATTTGGAAGGTTTTAAAAGCCCTCGAGTATTTCGGGGGTTCCACACTGTTCTTACCGATACAACTCTACAAGACCTCCATGGCTTCTCAGGTGTTGGTAGCTCTTGCACTTTCGCTTCTGGGGGGATTCAGTACTTCTCTAGGTGCACTTTTTGTGATTCTTAGCGGAGCCCCAAATTTGAAGATGCTCGGTCTTTTACAGGGCTTTGCTGCAGGTTTAATGTTGAGCATTTCGTTCCTGGATTTAGCTCATAATGCGATTAACTCAATTGGATTCTTAAAAGGAAATCTTTGGTTTTTTGCAGGTGTTATCTTCTTTGCATTTGTTGCTCATTTTATCCCAGAACCCACACTTGCTCCTGGTTCAGATACCAAACGTAAGAAGGACGATGACGAAGGGGGGAAGGACATTATGAAAAAGCATCGCCGTCAGGTTCTGTTCAGTGGCATAATAACAGCAATAGGAATAAGTTTACATAATTTTCCAGAAGGAATGGCTGTCTTTCTTGGATCAATTAAGGGCCTTCGTGTTGGTCTAAACTTAGCCTTAGCCATTGCCTTGCACAACATACCAGAGGGTATAGCTGTTGCGCTTCCTGTTTATTTTGCTACACAGAGCAAATGGCAGGCATTCAAGTTGGCTACTCTCTCTGGTTTTGCTGAGCCCCTCGGTGTTGTAATTGTAGCCTACTTATTTCCAAGCAGCTTGAGTCCTGAAATTCTGGAAGGTCTACTAGGATCTGTTGGCGGAATAATGGCGTTTCTAACTCTGCATGAAATGCTGCCTTTGGCATTTGATTATGCTGGACAGAAGCAAGCTGTGAAGGTCGTCTTCTTAGGAATGGCTTGTATGTCTGCAAGCCTTTATTTTCTGGAAATCAGCCTGCCGGAGGATTTGAGCTTGTAGTTACCTTTCTCTTCTGTTCCTTGCCATTTCTGTGTTGTAAATTTTCTGGAAAAAAAAGAACATGGGGAATAAAGGGTTACCATTTCTGTGTTACCTGTCATTTGCCTCAACAAGCACACAGCCCCCTTCCATAAAAATGTCAATTCCGTGTAAAAAGTTGAACTCTTCACCTTATCAGAGTGAAAAATGAATGGAATTGGTTTACTTGTTGATCTCAA ATGGCTTCTCAGGTGTTGGTAGCTCTTGCACTTTCGCTTCTGGGGGGATTCAGTACTTCTCTAGGTGCACTTTTTGTGATTCTTAGCGGAGCCCCAAATTTGAAGATGCTCGGTCTTTTACAGGGCTTTGCTGCAGGTTTAATGTTGAGCATTTCGTTCCTGGATTTAGCTCATAATGCGATTAACTCAATTGGATTCTTAAAAGGAAATCTTTGGTTTTTTGCAGGTGTTATCTTCTTTGCATTTGTTGCTCATTTTATCCCAGAACCCACACTTGCTCCTGGTTCAGATACCAAACGTAAGAAGGACGATGACGAAGGGGGGAAGGACATTATGAAAAAGCATCGCCGTCAGGTTCTGTTCAGTGGCATAATAACAGCAATAGGAATAAGTTTACATAATTTTCCAGAAGGAATGGCTGTCTTTCTTGGATCAATTAAGGGCCTTCGTGTTGGTCTAAACTTAGCCTTAGCCATTGCCTTGCACAACATACCAGAGGGTATAGCTGTTGCGCTTCCTGTTTATTTTGCTACACAGAGCAAATGGCAGGCATTCAAGTTGGCTACTCTCTCTGGTTTTGCTGAGCCCCTCGGTGTTGTAATTGTAGCCTACTTATTTCCAAGCAGCTTGAGTCCTGAAATTCTGGAAGGTCTACTAGGATCTGTTGGCGGAATAATGGCGTTTCTAACTCTGCATGAAATGCTGCCTTTGGCATTTGATTATGCTGGACAGAAGCAAGCTGTGAAGGTCGTCTTCTTAGGAATGGCTTGTATGTCTGCAAGCCTTTATTTTCTGGAAATCAGCCTGCCGGAGGATTTGAGCTTGTAG
BLAST of CmoCh20G000790.1 vs. Swiss-Prot
Match: ZTP29_ARATH (Zinc transporter ZTP29 OS=Arabidopsis thaliana GN=ZTP29 PE=2 SV=1) HSP 1 Score: 453.8 bits (1166), Expect = 1.4e-126 Identity = 234/276 (84.78%), Postives = 255/276 (92.39%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. Swiss-Prot
Match: ZNTB_DICDI (Protein zntB OS=Dictyostelium discoideum GN=zntB PE=2 SV=1) HSP 1 Score: 206.5 bits (524), Expect = 3.9e-52 Identity = 122/314 (38.85%), Postives = 170/314 (54.14%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. Swiss-Prot
Match: ZUPT_STRMK (Zinc transporter ZupT OS=Stenotrophomonas maltophilia (strain K279a) GN=zupT PE=3 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 5.2e-41 Identity = 104/268 (38.81%), Postives = 154/268 (57.46%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. Swiss-Prot
Match: ZUPT_STRM5 (Zinc transporter ZupT OS=Stenotrophomonas maltophilia (strain R551-3) GN=zupT PE=3 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 1.5e-40 Identity = 104/268 (38.81%), Postives = 153/268 (57.09%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. Swiss-Prot
Match: ZUPT_XANCP (Zinc transporter ZupT OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NCPPB 528 / LMG 568 / P 25) GN=zupT PE=3 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 2.6e-40 Identity = 101/274 (36.86%), Postives = 155/274 (56.57%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. TrEMBL
Match: A0A0A0L0N7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G290820 PE=4 SV=1) HSP 1 Score: 506.5 bits (1303), Expect = 2.0e-140 Identity = 263/275 (95.64%), Postives = 272/275 (98.91%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. TrEMBL
Match: B9RIA1_RICCO (Integral membrane protein, putative OS=Ricinus communis GN=RCOM_1577360 PE=4 SV=1) HSP 1 Score: 473.4 bits (1217), Expect = 1.9e-130 Identity = 248/276 (89.86%), Postives = 263/276 (95.29%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. TrEMBL
Match: A0A067JDX7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25902 PE=4 SV=1) HSP 1 Score: 469.9 bits (1208), Expect = 2.1e-129 Identity = 244/275 (88.73%), Postives = 260/275 (94.55%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. TrEMBL
Match: A0A061GTV9_THECC (ZIP metal ion transporter family isoform 1 OS=Theobroma cacao GN=TCM_040601 PE=4 SV=1) HSP 1 Score: 469.2 bits (1206), Expect = 3.5e-129 Identity = 247/276 (89.49%), Postives = 264/276 (95.65%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. TrEMBL
Match: A0A067FCY3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023878mg PE=4 SV=1) HSP 1 Score: 469.2 bits (1206), Expect = 3.5e-129 Identity = 245/276 (88.77%), Postives = 264/276 (95.65%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. TAIR10
Match: AT3G20870.1 (AT3G20870.1 ZIP metal ion transporter family) HSP 1 Score: 453.8 bits (1166), Expect = 7.8e-128 Identity = 234/276 (84.78%), Postives = 255/276 (92.39%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. TAIR10
Match: AT3G08650.2 (AT3G08650.2 ZIP metal ion transporter family) HSP 1 Score: 66.2 bits (160), Expect = 3.5e-11 Identity = 79/247 (31.98%), Postives = 112/247 (45.34%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. NCBI nr
Match: gi|659097633|ref|XP_008449729.1| (PREDICTED: zinc transporter ZTP29 isoform X1 [Cucumis melo]) HSP 1 Score: 508.1 bits (1307), Expect = 9.9e-141 Identity = 265/275 (96.36%), Postives = 272/275 (98.91%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. NCBI nr
Match: gi|449448736|ref|XP_004142121.1| (PREDICTED: zinc transporter ZTP29 [Cucumis sativus]) HSP 1 Score: 506.5 bits (1303), Expect = 2.9e-140 Identity = 263/275 (95.64%), Postives = 272/275 (98.91%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. NCBI nr
Match: gi|255544818|ref|XP_002513470.1| (PREDICTED: zinc transporter ZTP29 [Ricinus communis]) HSP 1 Score: 473.4 bits (1217), Expect = 2.7e-130 Identity = 248/276 (89.86%), Postives = 263/276 (95.29%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. NCBI nr
Match: gi|747085796|ref|XP_011090374.1| (PREDICTED: zinc transporter ZTP29 isoform X1 [Sesamum indicum]) HSP 1 Score: 472.2 bits (1214), Expect = 6.0e-130 Identity = 246/274 (89.78%), Postives = 263/274 (95.99%), Query Frame = 1
BLAST of CmoCh20G000790.1 vs. NCBI nr
Match: gi|802762677|ref|XP_012089971.1| (PREDICTED: zinc transporter ZTP29 [Jatropha curcas]) HSP 1 Score: 469.9 bits (1208), Expect = 3.0e-129 Identity = 244/275 (88.73%), Postives = 260/275 (94.55%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
|