CmoCh19G011080.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G011080.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ubiquitin carboxyl-terminal hydrolase family protein, putative
Location	Cmo_Chr19 : 9438196 .. 9439680 (+)
Sequence length	1485

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTGTTCTTCCGCTTTTGCTCAGGACCTCCCCACAAGTGCCGACAGCAAAGCCACGTATTTCAGATAAGCCTTCGAACATATGTAGACGGCACAATTAAATGGGTTCGAGATCGTGGTCTTGATCATGCTGTTGAGAGAGAGAAGAACCTTCTGCCGGTGATGAATATAAAGAATTTTATAAAATCAGAGCCGTCCAAGTCTGTTCCAGTTTCCATCATAACTCAGAAAAGGGAAGTTCTAAGGATTCCGACGCGTCCCATTGATTTGATCAGAAAATATCCCACCATTTTTGAAGAATTTCTCCCTGGAGGCATTGGCATTCAACCTCATGTCCGGCTAACTTCTCAGGTCCTTGAACTTGATGCTGAAGAGCAGTTAACGTATCAAAGTGAAATTTGTCGACAACAAGCTGCAGATCGACTTGTGAAGCTCTTGATGCTATCGAGAGTCCATAAAATACCTTTAAGTATCATTGATCAATTGAAATGGGAGCTGGGTCTTCCCAAAGATTATGTTCAAAGTATAGTTCCTGAGTTTCCGGATTACTTCAAAGTTGTAGGACACCAAAATTTTGCATCTGGATGGGGCACTATGCAAGCGTTGGAATTGGTATGTTGGAACAATGAATTGGCCACTTCAGTTTTAGAGAAGATGGCCGCAAAAGGAAAACCCGGCAGCACATCGAAGGGAATGCCTATTACTTTTCCTATGAAATACTCAAACGGGTTTGAGATGGACAAGAAGTTCAAGAAGTGGGTGGATGAGTGGCAAAAGCTACCTTACATTTCTCCCTACATAAATGCAACACATCTCCCTCCAAATAGCGATGAATCTGATAAGTGGTCTGTTGCGATTTTACACGAGTTTCTTCATATGCTTGTCACGAAGAAGACCGAGAAGGAAACTGTATTGGGGATAGGAGAGTACTTTGGCCTTCGGTCAAGGTTTAAGAGAGCATTGCTTCACCATCCAGGGATATTCTATCTATCGAGTAAGGCTGGAACCTACACAGTTGTCTTGAAAGAAGCGTATAAGAGGGGTTCGGTAATTGAGAGTAGCCCCTTGATGATCATTAGAAACAAGTATCTTCACCTTATGAACACAGTGAAGGAAGACAGTAAAACCACTAGCGAGCATAAGAGTACTCGCCAACAGAAGCAAGAACAGAAAGAAGGGTCAGATGATGGATCTGGGAAACAGAATGAAGCTGAATTATTCAACTCTGATGATGAAGATGAAGATGAAGAGGAAGACCAAGGTGAAGATGAAAATGCTAGTAGTAATCAAAACATTCAGGCTGATCGAAAAGAGGATGGACGTAATAAGAGACATGTTGATCTCAAAGAAAATTCTGTTAGAGACAGGATGCGATCATCAAAGAGAAGGAACTTGAGTGCGAAAAGACCTTCTAGGGATAGGGATGCTAAAAGAGAGAGGTCAAATATGAGTAAGAGATCTTCAGTGAGGACAAAGGTTTAG

mRNA sequence

ATGTCTCTGTTCTTCCGCTTTTGCTCAGGACCTCCCCACAAGTGCCGACAGCAAAGCCACGTATTTCAGATAAGCCTTCGAACATATGTAGACGGCACAATTAAATGGGTTCGAGATCGTGGTCTTGATCATGCTGTTGAGAGAGAGAAGAACCTTCTGCCGGTGATGAATATAAAGAATTTTATAAAATCAGAGCCGTCCAAGTCTGTTCCAGTTTCCATCATAACTCAGAAAAGGGAAGTTCTAAGGATTCCGACGCGTCCCATTGATTTGATCAGAAAATATCCCACCATTTTTGAAGAATTTCTCCCTGGAGGCATTGGCATTCAACCTCATGTCCGGCTAACTTCTCAGGTCCTTGAACTTGATGCTGAAGAGCAGTTAACGTATCAAAGTGAAATTTGTCGACAACAAGCTGCAGATCGACTTGTGAAGCTCTTGATGCTATCGAGAGTCCATAAAATACCTTTAAGTATCATTGATCAATTGAAATGGGAGCTGGGTCTTCCCAAAGATTATGTTCAAAGTATAGTTCCTGAGTTTCCGGATTACTTCAAAGTTGTAGGACACCAAAATTTTGCATCTGGATGGGGCACTATGCAAGCGTTGGAATTGGTATGTTGGAACAATGAATTGGCCACTTCAGTTTTAGAGAAGATGGCCGCAAAAGGAAAACCCGGCAGCACATCGAAGGGAATGCCTATTACTTTTCCTATGAAATACTCAAACGGGTTTGAGATGGACAAGAAGTTCAAGAAGTGGGTGGATGAGTGGCAAAAGCTACCTTACATTTCTCCCTACATAAATGCAACACATCTCCCTCCAAATAGCGATGAATCTGATAAGTGGTCTGTTGCGATTTTACACGAGTTTCTTCATATGCTTGTCACGAAGAAGACCGAGAAGGAAACTGTATTGGGGATAGGAGAGTACTTTGGCCTTCGGTCAAGGTTTAAGAGAGCATTGCTTCACCATCCAGGGATATTCTATCTATCGAGTAAGGCTGGAACCTACACAGTTGTCTTGAAAGAAGCGTATAAGAGGGGTTCGGTAATTGAGAGTAGCCCCTTGATGATCATTAGAAACAAGTATCTTCACCTTATGAACACAGTGAAGGAAGACAGTAAAACCACTAGCGAGCATAAGAGTACTCGCCAACAGAAGCAAGAACAGAAAGAAGGGTCAGATGATGGATCTGGGAAACAGAATGAAGCTGAATTATTCAACTCTGATGATGAAGATGAAGATGAAGAGGAAGACCAAGGTGAAGATGAAAATGCTAGTAGTAATCAAAACATTCAGGCTGATCGAAAAGAGGATGGACGTAATAAGAGACATGTTGATCTCAAAGAAAATTCTGTTAGAGACAGGATGCGATCATCAAAGAGAAGGAACTTGAGTGCGAAAAGACCTTCTAGGGATAGGGATGCTAAAAGAGAGAGGTCAAATATGAGTAAGAGATCTTCAGTGAGGACAAAGGTTTAG

Coding sequence (CDS)

ATGTCTCTGTTCTTCCGCTTTTGCTCAGGACCTCCCCACAAGTGCCGACAGCAAAGCCACGTATTTCAGATAAGCCTTCGAACATATGTAGACGGCACAATTAAATGGGTTCGAGATCGTGGTCTTGATCATGCTGTTGAGAGAGAGAAGAACCTTCTGCCGGTGATGAATATAAAGAATTTTATAAAATCAGAGCCGTCCAAGTCTGTTCCAGTTTCCATCATAACTCAGAAAAGGGAAGTTCTAAGGATTCCGACGCGTCCCATTGATTTGATCAGAAAATATCCCACCATTTTTGAAGAATTTCTCCCTGGAGGCATTGGCATTCAACCTCATGTCCGGCTAACTTCTCAGGTCCTTGAACTTGATGCTGAAGAGCAGTTAACGTATCAAAGTGAAATTTGTCGACAACAAGCTGCAGATCGACTTGTGAAGCTCTTGATGCTATCGAGAGTCCATAAAATACCTTTAAGTATCATTGATCAATTGAAATGGGAGCTGGGTCTTCCCAAAGATTATGTTCAAAGTATAGTTCCTGAGTTTCCGGATTACTTCAAAGTTGTAGGACACCAAAATTTTGCATCTGGATGGGGCACTATGCAAGCGTTGGAATTGGTATGTTGGAACAATGAATTGGCCACTTCAGTTTTAGAGAAGATGGCCGCAAAAGGAAAACCCGGCAGCACATCGAAGGGAATGCCTATTACTTTTCCTATGAAATACTCAAACGGGTTTGAGATGGACAAGAAGTTCAAGAAGTGGGTGGATGAGTGGCAAAAGCTACCTTACATTTCTCCCTACATAAATGCAACACATCTCCCTCCAAATAGCGATGAATCTGATAAGTGGTCTGTTGCGATTTTACACGAGTTTCTTCATATGCTTGTCACGAAGAAGACCGAGAAGGAAACTGTATTGGGGATAGGAGAGTACTTTGGCCTTCGGTCAAGGTTTAAGAGAGCATTGCTTCACCATCCAGGGATATTCTATCTATCGAGTAAGGCTGGAACCTACACAGTTGTCTTGAAAGAAGCGTATAAGAGGGGTTCGGTAATTGAGAGTAGCCCCTTGATGATCATTAGAAACAAGTATCTTCACCTTATGAACACAGTGAAGGAAGACAGTAAAACCACTAGCGAGCATAAGAGTACTCGCCAACAGAAGCAAGAACAGAAAGAAGGGTCAGATGATGGATCTGGGAAACAGAATGAAGCTGAATTATTCAACTCTGATGATGAAGATGAAGATGAAGAGGAAGACCAAGGTGAAGATGAAAATGCTAGTAGTAATCAAAACATTCAGGCTGATCGAAAAGAGGATGGACGTAATAAGAGACATGTTGATCTCAAAGAAAATTCTGTTAGAGACAGGATGCGATCATCAAAGAGAAGGAACTTGAGTGCGAAAAGACCTTCTAGGGATAGGGATGCTAAAAGAGAGAGGTCAAATATGAGTAAGAGATCTTCAGTGAGGACAAAGGTTTAG

Homology

[Close]

BLAST of CmoCh19G011080.1 vs. Swiss-Prot
Match: RPD1_ARATH (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.7e-30
Identity = 99/359 (27.58%), Postives = 177/359 (49.30%), Query Frame = 1


Query: 37  VRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRIPTR---PIDLIR 96
           VRD G D+ +E EK +  V+   + I S+P+ ++ +S++      L +  +   P   + 
Sbjct: 47  VRDHGYDNYMEVEKKIRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLL 106

Query: 97  KYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAAD---RLVKLLMLS 156
           K+P +FE      I   P  R+    L   A +Q+ ++ E    Q  D   RL KL+M+S
Sbjct: 107 KFPHVFE------IYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIPDAVTRLRKLVMMS 166

Query: 157 RVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALELVCWNN 216
              +I L  +   + E GLP+D+  S++ + P +F+++  +     +     +E+V  + 
Sbjct: 167 NTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKY-----IEIVEKDP 226

Query: 217 ELATSVLEKMAA--KGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQKLPYISPYI 276
            L+   +E++        G  ++ +  +F + +  GF++ K F+  V +WQ+LPY SPY 
Sbjct: 227 NLSICAIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVWKWQRLPYWSPYE 286

Query: 277 NATHLPPNSDES----DKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLH 336
           + +     S E+    +K SVA +HE L + V KK   E +        L  + K  LL 
Sbjct: 287 DISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQ 346

Query: 337 HPGIFYLSSKAG---TYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSE 381
           H GIFY+S++      +TV L+E YKRG ++E + + + R +   L+      +K  +E
Sbjct: 347 HQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAKVDAE 394

[Close]

BLAST of CmoCh19G011080.1 vs. TrEMBL
Match: A0A0A0KRP2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420350 PE=4 SV=1)

HSP 1 Score: 698.7 bits (1802), Expect = 4.9e-198
Identity = 368/491 (74.95%), Postives = 416/491 (84.73%), Query Frame = 1


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           M LFF   SGP  + + Q H+FQI LRTYVDGTI WVRDRGLDHAVEREKNLLPVMNIK+
Sbjct: 1   MFLFFCSYSGPLRRTQLQLHIFQIHLRTYVDGTINWVRDRGLDHAVEREKNLLPVMNIKD 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVP+SIITQKRE+LRIPTRPIDLIRKYP+IFEEFLPGGIGIQPHV+LTS+VL
Sbjct: 61  FIKSEPSKSVPLSIITQKREILRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVKLTSKVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLTYQ+  CRQQAADRLVKLLMLSRVHK+P+SIIDQLKW+LGLPKDYV+SIVP+
Sbjct: 121 ELDAEEQLTYQTSTCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPD 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASG G M+ LELVCWNNELATSV+EKMA K KP   SKGM ITFPMK
Sbjct: 181 FPDYFKVVGHQNFASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDK-SKGMYITFPMK 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY NA+HL PNSDESDKW+VAILHE LHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKE +L IGEYFGLRSRFKRALLHHPGIFY+SSKAGTYTVVLKE YKRGSV+ES+PLM I
Sbjct: 301 EKENILCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNI 360

Query: 361 RNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEED 420
           RNKYLHLMNTV+EDSKTT++H  TRQQKQEQKE S+   G+QNEAEL NS D       D
Sbjct: 361 RNKYLHLMNTVEEDSKTTTKHIDTRQQKQEQKEESNHAPGEQNEAELLNSSD-------D 420

Query: 421 QGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRE 480
           + EDEN SS++N+ AD++++ R  R  +++ +  R  +R  +R N+  +R    R  +R+
Sbjct: 421 EDEDENTSSHRNVCADQRDNIRGDRRGNVRCDR-RGNVRGDRRDNVRGERRDNVRGERRD 480

Query: 481 RSNMSKRSSVR 492
                +R  V+
Sbjct: 481 HVRADRRDHVK 482

[Close]

BLAST of CmoCh19G011080.1 vs. TrEMBL
Match: M5VK57_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024610mg PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 2.9e-137
Identity = 283/507 (55.82%), Postives = 351/507 (69.23%), Query Frame = 1


Query: 3   LFFRFCSGP-PHKCRQQSHVFQISLRTY-VDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 62
           ++F F S P PH   Q SH      RT+ VD T KWVRDRGLDHAVEREKNL P++NIKN
Sbjct: 4   IYFTFRSLPKPHS--QSSHHSHSRHRTFFVDATTKWVRDRGLDHAVEREKNLRPMVNIKN 63

Query: 63  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 122
           FIKSEPSKS+P+SII Q RE L IPTRPID IRKYP+IFEEFLPGG  IQPHVRLT QVL
Sbjct: 64  FIKSEPSKSLPISIIAQNRESLMIPTRPIDFIRKYPSIFEEFLPGGGAIQPHVRLTGQVL 123

Query: 123 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 182
           +LDAEE+L YQSE  RQ  ADRL+KLLML R +K+PL++I+ LKW+LGLP DY +S+V E
Sbjct: 124 DLDAEEELMYQSESYRQDVADRLLKLLMLVRTNKLPLNVIESLKWDLGLPHDYQKSLVHE 183

Query: 183 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEK-MAAKGKPGSTSKGMPIT--- 242
           +PDYF +V  +N ASGW  ++ LELVCW NE+ATSV EK  AAK K  S  K   ++   
Sbjct: 184 YPDYFNIVVGKNSASGWKDLRDLELVCWRNEMATSVFEKNAAAKEKKASAKKKRALSGDS 243

Query: 243 ---------FPMKYSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAI 302
                    FPM++S GFEMDKK KKW+DEWQKLPY+SPY NA HL   SDESDKW VAI
Sbjct: 244 PSKEEDQCVFPMQFSRGFEMDKKLKKWIDEWQKLPYVSPYENAAHLSSKSDESDKWVVAI 303

Query: 303 LHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYK 362
           LHE LH+LV KKT++E +L +GEY GLRSRFK+ALLHHPGIFYLS+K GTYTVVL+E YK
Sbjct: 304 LHELLHILVPKKTDRENLLCLGEYLGLRSRFKQALLHHPGIFYLSNKIGTYTVVLREGYK 363

Query: 363 RGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAEL 422
           RG++IE+  LM +R++Y+HLMNTVKEDSK  S    +  +K   K   D   GK  E E 
Sbjct: 364 RGTIIENHQLMNMRSQYIHLMNTVKEDSKMVSVPGGSTLEK---KAVVDVPKGKGEEKE- 423

Query: 423 FNSDDEDEDEEEDQGEDENASSNQNI-QADRKEDGRNKRHVDLKENSVRDRMRSSKRRNL 482
                +DE EEE +GE  ++S  + +   D  E+  +     +++  + +R R  ++ + 
Sbjct: 424 -----DDESEEEQEGELRDSSDTEFLYDDDSDEEDEDLSETSIEKRGINNRGRRGRKSHF 483

Query: 483 SAKRPSRDRDAKRERSNMSKRSSVRTK 494
             K PSR+ +        ++ S    K
Sbjct: 484 DGKTPSRNAERGTSGGRKARNSDFNGK 499

[Close]

BLAST of CmoCh19G011080.1 vs. TrEMBL
Match: F6HYS7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00460 PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 5.6e-133
Identity = 253/433 (58.43%), Postives = 330/433 (76.21%), Query Frame = 1


Query: 20  HVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKR 79
           H  + S R++ D TIK V+DRGL+HAVE+E++L P++NIKN IKSEPSKSVP+S+I+Q +
Sbjct: 13  HYHRQSRRSFGDATIKRVQDRGLEHAVEKERSLKPMLNIKNLIKSEPSKSVPISLISQNK 72

Query: 80  EVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQA 139
           E L + TRPID IR++P+IFEEFLPGGI I PHVRLT +VL LD EE   +Q+E  R+QA
Sbjct: 73  EALGLWTRPIDFIRRFPSIFEEFLPGGIKIHPHVRLTPEVLSLDGEELSIFQTENYRKQA 132

Query: 140 ADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGT 199
           ADRL+KLLMLSR++KIPL+I+D+LKW+LGLP+DYV+++VPEFPDYF+V   ++  SG   
Sbjct: 133 ADRLLKLLMLSRINKIPLTIVDRLKWDLGLPQDYVETLVPEFPDYFQVTSAEDHFSGSRG 192

Query: 200 MQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQ 259
           M+ LELVCW+NELA SV+EK A  G+ G   KGM I FP+ +S GFEMDKK KKWVDEWQ
Sbjct: 193 MRVLELVCWSNELAISVMEKKAMAGQ-GGFEKGMAIAFPLHFSRGFEMDKKMKKWVDEWQ 252

Query: 260 KLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFK 319
           KL YISPY NA+HLPP SDESDKW+V +LHE LH+ V +KT+KE +L +GEY GLRSRFK
Sbjct: 253 KLVYISPYENASHLPPKSDESDKWAVGLLHELLHLFVPRKTDKENILCLGEYMGLRSRFK 312

Query: 320 RALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTS 379
           RAL++HPGIFYLS+K G +TV+LKEAYKR  +IE  PLM +R +Y+HLMNT KED+K  +
Sbjct: 313 RALVNHPGIFYLSTKTGMHTVLLKEAYKRDLLIEKHPLMEMRYQYIHLMNTAKEDNKPIN 372

Query: 380 --------EHKSTRQQKQEQKEGSDDG-SGKQNEAELFN-----SDDEDEDEEEDQGEDE 439
                   E K+      E+ E  +D  SG++ E EL +     SDD+ EDE+ED   + 
Sbjct: 373 APGTSPKKEQKNASDASGEKSEQVEDAESGEEYEGELHSDVEEASDDDYEDEDEDDEIET 432

[Close]

BLAST of CmoCh19G011080.1 vs. TrEMBL
Match: A5BJQ8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018330 PE=4 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 6.2e-132
Identity = 252/433 (58.20%), Postives = 329/433 (75.98%), Query Frame = 1


Query: 20  HVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKR 79
           H  + S R++ D TIK V+DRGL+HAVE+E++L P++NIKN IKSEPSKSVP+S+I+Q +
Sbjct: 13  HYHRQSRRSFGDATIKRVQDRGLEHAVEKERSLKPMLNIKNLIKSEPSKSVPISLISQNK 72

Query: 80  EVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQA 139
           E L + TRPID IR++P+IFEEFLPGGI I PHVRLT +VL LD EE   +Q+E  R+QA
Sbjct: 73  EALGLWTRPIDFIRRFPSIFEEFLPGGIKIHPHVRLTPEVLSLDGEELSIFQTENYRKQA 132

Query: 140 ADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGT 199
           ADRL+KLLMLSR++KIPL+I+D+LKW+LGLP+DYV+++VPEFPDYF+V   ++  SG   
Sbjct: 133 ADRLLKLLMLSRINKIPLTIVDRLKWDLGLPQDYVETLVPEFPDYFQVTSAEDHFSGSRG 192

Query: 200 MQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQ 259
           M+ LELVCW+NELA SV+EK A  G+ G   KGM I FP+ +S GFEMDKK KKWVDEWQ
Sbjct: 193 MRVLELVCWSNELAISVMEKKAMAGQ-GGFEKGMAIAFPLHFSRGFEMDKKMKKWVDEWQ 252

Query: 260 KLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFK 319
           KL YISPY NA+HLPP SDESDKW+V +LHE LH+ V +KT+KE +L +GEY GLRSRFK
Sbjct: 253 KLVYISPYENASHLPPKSDESDKWAVGLLHELLHLFVPRKTDKENILCLGEYMGLRSRFK 312

Query: 320 RALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTS 379
           RAL++ PGIFYLS+K G +TV+LKEAYKR  +IE  PLM +R +Y+HLMNT KED+K  +
Sbjct: 313 RALVNXPGIFYLSTKTGMHTVLLKEAYKRDLLIEKHPLMEMRYQYIHLMNTAKEDNKPIN 372

Query: 380 --------EHKSTRQQKQEQKEGSDDG-SGKQNEAELFN-----SDDEDEDEEEDQGEDE 439
                   E K+      E+ E  +D  SG++ E EL +     SDD+ EDE+ED   + 
Sbjct: 373 APGTSPKKEQKNASDASGEKSEQVEDAESGEEYEGELHSDVEEASDDDYEDEDEDDEIET 432

[Close]

BLAST of CmoCh19G011080.1 vs. TrEMBL
Match: U5FSE7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11980g PE=4 SV=1)

HSP 1 Score: 471.9 bits (1213), Expect = 9.8e-130
Identity = 254/467 (54.39%), Postives = 346/467 (74.09%), Query Frame = 1


Query: 5   FRFCSGPPHKCRQQSHVFQISLRTYVD-GTIKWVRDRGLDHAVEREKNLLPVMNIKNFIK 64
           F F S P  K R Q H      R+ VD   IK VRDRGLDHAVEREK+L PV++IKN IK
Sbjct: 3   FLFRSLP--KPRHQGH-----RRSLVDFAAIKHVRDRGLDHAVEREKHLKPVLSIKNLIK 62

Query: 65  SEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELD 124
           SEPS+S+P+SI+TQ+++ L+IP RPI+LIR+YP++F+EFLPGGIGI PHV+LT QVL+LD
Sbjct: 63  SEPSRSLPISIVTQQKDFLKIPIRPIELIRRYPSVFQEFLPGGIGIHPHVKLTQQVLDLD 122

Query: 125 AEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPD 184
            EEQL YQSE  +   A+RL+KLLM+SR+ KIPL ++D L W+LGLP+D V+S+VPEFPD
Sbjct: 123 IEEQLVYQSESYKNDVANRLLKLLMISRIDKIPLKLLDFLLWDLGLPQDCVKSLVPEFPD 182

Query: 185 YFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSN 244
           YF+V+G +N +   G+   LELVCW++ELA SV+EK A   + G   KGMPI FPM++S 
Sbjct: 183 YFRVLGDKNLSPWSGSDLGLELVCWSDELAVSVMEKRAKSRETGYV-KGMPIEFPMQFSK 242

Query: 245 GFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKE 304
           GFE+DK+ K+W+ +WQKLPY+SPY NA HL PN+DESD+W+V +LHE L++ V+KK EK+
Sbjct: 243 GFEIDKRLKQWIGDWQKLPYVSPYENAMHLGPNTDESDRWAVGVLHEVLNLSVSKKVEKD 302

Query: 305 TVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNK 364
           T+L +GE+ G+RSRFKRALLHHPGIFYLS+K GTYTVVLKE YKRG ++E +P++ IRN+
Sbjct: 303 TLLCLGEWLGIRSRFKRALLHHPGIFYLSNKIGTYTVVLKEGYKRGLLVEKNPVVDIRNQ 362

Query: 365 YLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEA----------ELFNSDDE 424
           Y+HLM+TV E+ K+ + H  + QQ++++ +G  +G G++ +A            F  D E
Sbjct: 363 YIHLMHTVVEERKSITVHGGS-QQQEKKTDGKSEGQGEKQDANDCVEVSDAGSDFEDDSE 422

Query: 425 D--EDEEEDQGEDENASSN--QNIQADRKEDGRNKRHVDLKENSVRD 457
           D  E  EE+ GE+ N + +   N++  R+E G  K H   ++  V++
Sbjct: 423 DGYEYNEEEGGENRNKNLDVRGNLKYARRERGVEKHHGKTRDKVVQN 460

[Close]

BLAST of CmoCh19G011080.1 vs. TAIR10
Match: AT1G71850.1 (AT1G71850.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 438.3 bits (1126), Expect = 6.1e-123
Identity = 232/443 (52.37%), Postives = 318/443 (71.78%), Query Frame = 1


Query: 30  VDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRIPTRPI 89
           V+ T K+VRDRGLDHAVEREKNL P+++IK+ I+SEP+KSVP+S+IT +++ LR+P RPI
Sbjct: 25  VEDTYKFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVPLRPI 84

Query: 90  DLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLVKLLML 149
           + IR +P++F+EFLPGGIGI PH+ LT ++L  DA+EQL Y SE  +Q  ADRL+KLLM+
Sbjct: 85  EFIRSFPSVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMI 144

Query: 150 SRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALELVCWN 209
           +R++KIPL I+D LKW+LGLPKDYV+++VPEFPDYF+V+  +      G    LELVCW+
Sbjct: 145 NRINKIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLR----GCSGELELVCWS 204

Query: 210 NELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQKLPYISPYIN 269
           NE A SVLEK A   + G  +KG  I FPMK+SNGF +DKK KKW+D+WQKLPYISPY N
Sbjct: 205 NEHAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYEN 264

Query: 270 ATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLHHPGIF 329
           A HL   SDESDKW+ A+LHE +++ V+KK EK+ +L +GE+ GLRSRFKR L +HPGIF
Sbjct: 265 ALHLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNHPGIF 324

Query: 330 YLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSEHKSTRQQKQ 389
           YLSSK  T+TVVL++ YKRG +IES+ L+  RN+Y+ LMNTVK+D+K  S       + +
Sbjct: 325 YLSSKLRTHTVVLRDGYKRGMLIESNELVTSRNRYMKLMNTVKKDNKAVSSSSKKEDKGK 384

Query: 390 EQKEGSDDGSGKQNEAELFNSDDEDE---DEEEDQGEDENASSNQNIQADRKEDGRNKRH 449
            + E  D  +  +N+ ++  SD ED+   D  +D  +D+    NQ+++  R+        
Sbjct: 385 VEGEVCDTDAKAEND-DISGSDVEDDRQGDFVDDDEDDDEVDQNQDLERGRRNSSPRSGR 444

Query: 450 VDLKENSVRDRMRSSKRRNLSAK 470
                +  RD+ + S+R  +S K
Sbjct: 445 RSFGNSGSRDKAQ-SRRSKISLK 461

[Close]

BLAST of CmoCh19G011080.1 vs. TAIR10
Match: AT4G24320.1 (AT4G24320.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 290.8 bits (743), Expect = 1.6e-78
Identity = 151/365 (41.37%), Postives = 229/365 (62.74%), Query Frame = 1


Query: 27  RTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRIPT 86
           RT+V+  +KWV D  LD AV+REKNL  V+++K+ I S PSKS+P+S ++  + ++ +  
Sbjct: 16  RTFVNARVKWVSDHYLDEAVQREKNLKQVISLKDRIVSSPSKSLPLSSLSLLKPLVNLHI 75

Query: 87  RPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLVKL 146
                 +KYP++F  F P       HVRLT Q L L  EE+  + S   R     RL K 
Sbjct: 76  TAAAFFQKYPSVFTTFQPSP-SHPLHVRLTPQALTLHKEEETIHLSPPQRNVTVQRLTKF 135

Query: 147 LMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALELV 206
           LML+    +PL ++D+ +++LGLP+DY+ S++ ++P+YF+V   ++  +G  T+ AL + 
Sbjct: 136 LMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYPEYFEVTEIKDRLTGEKTL-ALTIS 195

Query: 207 CWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQKLPYISP 266
              N L  S +E+  A        KG+ I + M +  G+E+ K+ K WV++WQ LPYISP
Sbjct: 196 SRRNNLPVSEMERREATIDGSRVKKGLRIRYSMNFPKGYELHKRVKNWVEQWQNLPYISP 255

Query: 267 YINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLHHP 326
           Y NA HL   SD+++KW+VA+LHE L +LV+KKTE + V+ +GEY G   RFK+AL+HHP
Sbjct: 256 YENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTETDNVICLGEYLGFGMRFKKALVHHP 315

Query: 327 GIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSEHKSTRQ 386
           GIFY+S K  T TVVL+EAY +  ++E  PLM IR++Y++LM+      K    H   R 
Sbjct: 316 GIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGIRHQYIYLMSKSGRGKKRDYVHGVERS 375

Query: 387 QKQEQ 392
            ++++
Sbjct: 376 NRKKR 378

[Close]

BLAST of CmoCh19G011080.1 vs. TAIR10
Match: AT5G48040.1 (AT5G48040.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 217.6 bits (553), Expect = 1.7e-56
Identity = 139/402 (34.58%), Postives = 213/402 (52.99%), Query Frame = 1


Query: 14  KCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVS 73
           KCR++   F       V+  +KWV+DR LD  V REK+L  V N+ + I + P   +P+ 
Sbjct: 17  KCRERFDFFYQQRCGLVNVKLKWVKDRELDAVVVREKHLRAVCNLVSVISASPDLRLPIF 76

Query: 74  IITQKREVLRIPT--RPIDLIRKYPTIFEEFL---PGGIGIQPHVRLTSQVLELDAEEQL 133
            +   R  L +P   +    IR+YP IF E       G  + P   LT + ++L  EE  
Sbjct: 77  KLLPHRGQLGLPQELKLSAFIRRYPNIFVEHCYWDSAGTSV-PCFGLTRETIDLYYEE-- 136

Query: 134 TYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVV 193
              S +  +    RL KLLML+    + L  ID L+W+LGLP DY  S++ + PD F +V
Sbjct: 137 VDVSRVNERDVLVRLCKLLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHPDLFSLV 196

Query: 194 GHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMD 253
              +   G      L+L+ W+  LA S   +M  +   G+  +   + FP+K++ GF + 
Sbjct: 197 KLSSDLDG------LKLIHWDEHLAVS---QMQLREDVGNDER---MAFPVKFTRGFGLK 256

Query: 254 KKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGI 313
           +K  +W+ EWQ+LPY SPY++A+HL P +D S+K +V + HE LH+ + KKTE++ V  +
Sbjct: 257 RKSIEWLQEWQRLPYTSPYVDASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNL 316

Query: 314 GEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLM 373
            + F L  +F +    HPGIFY+S K  T TV+L+EAY R  +IE  PL+ +R K+ ++M
Sbjct: 317 RKPFALPQKFTKVFERHPGIFYISMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANMM 376

Query: 374 NTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNS 411
           N    D       KS     ++    +        E EL N+
Sbjct: 377 NEGFLDRSRGLYQKSVEADLEKNNIKTSYPVWSDEEEELDNN 403

[Close]

BLAST of CmoCh19G011080.1 vs. TAIR10
Match: AT2G39120.1 (AT2G39120.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 212.2 bits (539), Expect = 7.1e-55
Identity = 125/344 (36.34%), Postives = 195/344 (56.69%), Query Frame = 1


Query: 27  RTYVDGTIKWVRDRGLDHA--VEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRI 86
           RTYVD  +KW RD   D+   + R   L  V+++KN I  EP++ +P+S I++K     +
Sbjct: 22  RTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDV 81

Query: 87  PTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLV 146
            T+    +RK+P+IFEEF+     + P  RLT +  ELD +E++ YQ+        DRL 
Sbjct: 82  STKIAHFLRKFPSIFEEFVGPEYNL-PWFRLTPEATELDRQERVVYQTSA--DDLRDRLK 141

Query: 147 KLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALE 206
           KL+++S+ + +PLSI+  +KW LGLP DY+Q         F+ V  ++   G      L 
Sbjct: 142 KLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKG------LA 201

Query: 207 LVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMKYSNGFEMDKKFKKWVDEWQKLPYI 266
           +     +   SVL+K A K + G  S    I FP+  S G  +  K + W+ E+QKLPY+
Sbjct: 202 VDYNGGDKVLSVLQKNAMKKRRGEVSLE-EIEFPLFPSKGCRLRVKIEDWLMEFQKLPYV 261

Query: 267 SPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLH 326
           SPY + + L P+SD ++K  V  LHE L + V    E++ +L + ++FGL  +  +A   
Sbjct: 262 SPYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFER 321

Query: 327 HPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLM 369
           HP IFYLS K  T T +L+E Y+  + +E+ P++ +R KY+ LM
Sbjct: 322 HPQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLM 355

[Close]

BLAST of CmoCh19G011080.1 vs. TAIR10
Match: AT3G58520.1 (AT3G58520.1 Ubiquitin carboxyl-terminal hydrolase family protein)

HSP 1 Score: 201.1 bits (510), Expect = 1.6e-51
Identity = 125/394 (31.73%), Postives = 211/394 (53.55%), Query Frame = 1


Query: 34  IKWVRDRGLDHAVEREKNLLPVMNIKNFIKSEPSKSVPVSIITQKREVLRIPTRPIDLIR 93
           +KWV+++ LDH ++ E +L     +K+ IK  P+  +    +   +++L +    +  +R
Sbjct: 33  LKWVKNKNLDHVIDTETDLKAACILKDAIKRSPTGFLTAKSVADWQKLLGLTVPVLRFLR 92

Query: 94  KYPTIFEEFLPGGIGIQPHVRLTSQVLELDAEEQLTYQSEICRQQAADRLVKLLMLSRVH 153
           +YPT+F EF        P  +LT   L LD++E++ +QS        +RL ++LM+ R  
Sbjct: 93  RYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSH--EADTVERLCRVLMMMRSK 152

Query: 154 KIPLSIIDQLKWELGLPKDYVQSIVPEFPDYFKVVGHQNFASGWGTMQALELVCWNNELA 213
            + L  +  LK++LGLP +Y +++V ++PD+F  V   N          L+LV W +E A
Sbjct: 153 TVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASN------GNPCLKLVKWRDEFA 212

Query: 214 TSVLEKM-------AAKGKPGSTSKGMP-ITFPMKYSNGFEMDKKFKKWVDEWQKLPYIS 273
            S L+K          + +     +G   +TFPM +  G+   KK K W+DE+QKLPYIS
Sbjct: 213 FSALQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLPYIS 272

Query: 274 PYINATHLPPNSDESDKWSVAILHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLHH 333
           PY + +++ P SD  +K +VA+LHE L + + KKT++  +  +     +  +F R    +
Sbjct: 273 PYDDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLFTRY 332

Query: 334 PGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSEHKSTR 393
           PGIFYLS K  T TV+LKE Y+RG +++  PL  +R+K+ H+M T            S  
Sbjct: 333 PGIFYLSLKCKTTTVILKEGYRRGKLVDPHPLTRLRDKFYHVMRTGFLYRARGLGMVSKE 392

Query: 394 QQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEE 420
           +   ++ E   +  G + E  +  S+ E++ E E
Sbjct: 393 ELLLDRPEDDLEEEGSEEEEIVEGSELEEDSEAE 418

[Close]

BLAST of CmoCh19G011080.1 vs. NCBI nr
Match: gi|659092602|ref|XP_008447139.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 700.7 bits (1807), Expect = 1.9e-198
Identity = 377/498 (75.70%), Postives = 420/498 (84.34%), Query Frame = 1


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           M LFFR  SGP  + +QQ H+ QI LRTYVDGTI WVRDRGLDHAVEREKNLLPVMNIK+
Sbjct: 1   MFLFFRSYSGPLSRTQQQLHISQIHLRTYVDGTINWVRDRGLDHAVEREKNLLPVMNIKD 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVPVSIITQKRE+LRIP RPIDLIRKYP+IFEEFLPGGIG+QPHV+LTS+VL
Sbjct: 61  FIKSEPSKSVPVSIITQKREILRIPMRPIDLIRKYPSIFEEFLPGGIGVQPHVKLTSKVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLTYQ+  CRQQAADRL+KLLMLSRVHK+P+SIIDQLKW+LGLPKD+VQSIVPE
Sbjct: 121 ELDAEEQLTYQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPE 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVG QNFASG G M+ LELVCWNNELATSVLEKMAAK K   TSK M ITFPMK
Sbjct: 181 FPDYFKVVGRQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVK-HDTSKRMDITFPMK 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY NA+HL PNSDESDKW+VAILHE LHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKE +L IGEYFGLRSRFKRALLHHPGIFY+SSKAGTYTVVLKE YKRGSV+ES+PLM I
Sbjct: 301 EKENILCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNI 360

Query: 361 RNKYLHLMNTVKEDSKTTSEHKSTRQ----QKQEQKEGSDDGSGKQNEAELFNSDDEDED 420
           RNKYLHLMNTV+EDSKTT++H STRQ    QKQEQKEGSDD  G QNEAEL NS D   D
Sbjct: 361 RNKYLHLMNTVEEDSKTTTKHISTRQQKQEQKQEQKEGSDDAFGVQNEAELLNSSD---D 420

Query: 421 EEEDQGEDENASSNQNIQADRKEDGRNKRHVDLKEN---SVRDRMRSSKRRNLSAKRPSR 480
           E+ED+ EDEN SS   ++AD +++ R     DL++N     RD + + +R ++ A R   
Sbjct: 421 EDEDEDEDENTSSPHTVRADPRDNVR----ADLRDNVRADRRDHVCADRRDHVRADRRDH 480

Query: 481 DRDAKRERSNMSKRSSVR 492
            R  +R++    +R  VR
Sbjct: 481 VRADRRDQVRADRRDQVR 490

[Close]

BLAST of CmoCh19G011080.1 vs. NCBI nr
Match: gi|659092598|ref|XP_008447137.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 700.3 bits (1806), Expect = 2.4e-198
Identity = 375/495 (75.76%), Postives = 417/495 (84.24%), Query Frame = 1


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           M LFFR  SGP  + +QQ H+ QI LRTYVDGTI WVRDRGLDHAVEREKNLLPVMNIK+
Sbjct: 1   MFLFFRSYSGPLSRTQQQLHISQIHLRTYVDGTINWVRDRGLDHAVEREKNLLPVMNIKD 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVPVSIITQKRE+LRIP RPIDLIRKYP+IFEEFLPGGIG+QPHV+LTS+VL
Sbjct: 61  FIKSEPSKSVPVSIITQKREILRIPMRPIDLIRKYPSIFEEFLPGGIGVQPHVKLTSKVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLTYQ+  CRQQAADRL+KLLMLSRVHK+P+SIIDQLKW+LGLPKD+VQSIVPE
Sbjct: 121 ELDAEEQLTYQTSTCRQQAADRLLKLLMLSRVHKVPVSIIDQLKWDLGLPKDFVQSIVPE 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVG QNFASG G M+ LELVCWNNELATSVLEKMAAK K   TSK M ITFPMK
Sbjct: 181 FPDYFKVVGRQNFASGSGDMRVLELVCWNNELATSVLEKMAAKVK-HDTSKRMDITFPMK 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY NA+HL PNSDESDKW+VAILHE LHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKE +L IGEYFGLRSRFKRALLHHPGIFY+SSKAGTYTVVLKE YKRGSV+ES+PLM I
Sbjct: 301 EKENILCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNI 360

Query: 361 RNKYLHLMNTVKEDSKTTSEHKSTRQ----QKQEQKEGSDDGSGKQNEAELFNSDDEDED 420
           RNKYLHLMNTV+EDSKTT++H STRQ    QKQEQKEGSDD  G QNEAEL NS D   D
Sbjct: 361 RNKYLHLMNTVEEDSKTTTKHISTRQQKQEQKQEQKEGSDDAFGVQNEAELLNSSD---D 420

Query: 421 EEEDQGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRD 480
           E+ED+ EDEN SS   ++AD +++ R           +RD +R+ +R ++ A R  + R 
Sbjct: 421 EDEDEDEDENTSSPHTVRADPRDNVR---------ADLRDNVRADRRDHVCADRGDQVRA 480

Query: 481 AKRERSNMSKRSSVR 492
            +R+     +R  VR
Sbjct: 481 DRRDHVRADRRDHVR 482

[Close]

BLAST of CmoCh19G011080.1 vs. NCBI nr
Match: gi|778702601|ref|XP_004151592.2| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 699.9 bits (1805), Expect = 3.2e-198
Identity = 369/491 (75.15%), Postives = 416/491 (84.73%), Query Frame = 1


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           M LFF   SGP  + + Q H+FQI LRTYVDGTI WVRDRGLDHAVEREKNLLPVMNIK+
Sbjct: 1   MFLFFCSYSGPLRRTQLQLHIFQIHLRTYVDGTINWVRDRGLDHAVEREKNLLPVMNIKD 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVP+SIITQKRE+LRIPTRPIDLIRKYP+IFEEFLPGGIGIQPHV+LTS+VL
Sbjct: 61  FIKSEPSKSVPLSIITQKREILRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVKLTSKVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLTYQ+  CRQQAADRLVKLLMLSRVHK+P+SIIDQLKW+LGLPKDYV+SIVP+
Sbjct: 121 ELDAEEQLTYQTSTCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPD 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASG G M+ LELVCWNNELATSV+EKMA K KP   SKGM ITFPMK
Sbjct: 181 FPDYFKVVGHQNFASGSGDMRVLELVCWNNELATSVIEKMAVKVKP-DKSKGMYITFPMK 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY NA+HL PNSDESDKW+VAILHE LHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKE +L IGEYFGLRSRFKRALLHHPGIFY+SSKAGTYTVVLKE YKRGSV+ES+PLM I
Sbjct: 301 EKENILCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNI 360

Query: 361 RNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEED 420
           RNKYLHLMNTV+EDSKTT++H  TRQQKQEQKE S+   G+QNEAEL NS D       D
Sbjct: 361 RNKYLHLMNTVEEDSKTTTKHIDTRQQKQEQKEESNHAPGEQNEAELLNSSD-------D 420

Query: 421 QGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRE 480
           + EDEN SS++N+ AD++++ R  R  +++ +  R  +R  +R N+  +R    R  +R+
Sbjct: 421 EDEDENTSSHRNVCADQRDNIRGDRRGNVRCDR-RGNVRGDRRDNVRGERRDNVRGERRD 480

Query: 481 RSNMSKRSSVR 492
                +R  VR
Sbjct: 481 HVRADRRDHVR 482

[Close]

BLAST of CmoCh19G011080.1 vs. NCBI nr
Match: gi|778702604|ref|XP_011655231.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 698.7 bits (1802), Expect = 7.1e-198
Identity = 368/491 (74.95%), Postives = 416/491 (84.73%), Query Frame = 1


Query: 1   MSLFFRFCSGPPHKCRQQSHVFQISLRTYVDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 60
           M LFF   SGP  + + Q H+FQI LRTYVDGTI WVRDRGLDHAVEREKNLLPVMNIK+
Sbjct: 1   MFLFFCSYSGPLRRTQLQLHIFQIHLRTYVDGTINWVRDRGLDHAVEREKNLLPVMNIKD 60

Query: 61  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 120
           FIKSEPSKSVP+SIITQKRE+LRIPTRPIDLIRKYP+IFEEFLPGGIGIQPHV+LTS+VL
Sbjct: 61  FIKSEPSKSVPLSIITQKREILRIPTRPIDLIRKYPSIFEEFLPGGIGIQPHVKLTSKVL 120

Query: 121 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 180
           ELDAEEQLTYQ+  CRQQAADRLVKLLMLSRVHK+P+SIIDQLKW+LGLPKDYV+SIVP+
Sbjct: 121 ELDAEEQLTYQTSTCRQQAADRLVKLLMLSRVHKVPVSIIDQLKWDLGLPKDYVESIVPD 180

Query: 181 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEKMAAKGKPGSTSKGMPITFPMK 240
           FPDYFKVVGHQNFASG G M+ LELVCWNNELATSV+EKMA K KP   SKGM ITFPMK
Sbjct: 181 FPDYFKVVGHQNFASGSGDMRVLELVCWNNELATSVIEKMAVKVKPDK-SKGMYITFPMK 240

Query: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAILHEFLHMLVTKKT 300
           YSNGFEMDKKFKKWVDEWQKLPYISPY NA+HL PNSDESDKW+VAILHE LHMLVTKKT
Sbjct: 241 YSNGFEMDKKFKKWVDEWQKLPYISPYENASHLSPNSDESDKWTVAILHELLHMLVTKKT 300

Query: 301 EKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYKRGSVIESSPLMII 360
           EKE +L IGEYFGLRSRFKRALLHHPGIFY+SSKAGTYTVVLKE YKRGSV+ES+PLM I
Sbjct: 301 EKENILCIGEYFGLRSRFKRALLHHPGIFYISSKAGTYTVVLKEGYKRGSVVESNPLMNI 360

Query: 361 RNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAELFNSDDEDEDEEED 420
           RNKYLHLMNTV+EDSKTT++H  TRQQKQEQKE S+   G+QNEAEL NS D       D
Sbjct: 361 RNKYLHLMNTVEEDSKTTTKHIDTRQQKQEQKEESNHAPGEQNEAELLNSSD-------D 420

Query: 421 QGEDENASSNQNIQADRKEDGRNKRHVDLKENSVRDRMRSSKRRNLSAKRPSRDRDAKRE 480
           + EDEN SS++N+ AD++++ R  R  +++ +  R  +R  +R N+  +R    R  +R+
Sbjct: 421 EDEDENTSSHRNVCADQRDNIRGDRRGNVRCDR-RGNVRGDRRDNVRGERRDNVRGERRD 480

Query: 481 RSNMSKRSSVR 492
                +R  V+
Sbjct: 481 HVRADRRDHVK 482

[Close]

BLAST of CmoCh19G011080.1 vs. NCBI nr
Match: gi|645263644|ref|XP_008237329.1| (PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Prunus mume])

HSP 1 Score: 500.7 bits (1288), Expect = 2.8e-138
Identity = 283/507 (55.82%), Postives = 357/507 (70.41%), Query Frame = 1


Query: 3   LFFRFCSGP-PHKCRQQSHVFQISLRTY-VDGTIKWVRDRGLDHAVEREKNLLPVMNIKN 62
           ++F F S P PH   Q SH      RT+ VD T KWVRDRGLDHAVEREKNL P++NIKN
Sbjct: 4   IYFTFRSLPKPHS--QSSHHSHSRHRTFFVDATTKWVRDRGLDHAVEREKNLRPMVNIKN 63

Query: 63  FIKSEPSKSVPVSIITQKREVLRIPTRPIDLIRKYPTIFEEFLPGGIGIQPHVRLTSQVL 122
           FIKSEPSKS+P+SII Q RE L IPTRPID IRKYP+IFEEFLPGG  IQPHVRLT QVL
Sbjct: 64  FIKSEPSKSLPISIIAQNRESLMIPTRPIDFIRKYPSIFEEFLPGGGAIQPHVRLTGQVL 123

Query: 123 ELDAEEQLTYQSEICRQQAADRLVKLLMLSRVHKIPLSIIDQLKWELGLPKDYVQSIVPE 182
           +LDAEE+L YQSE  RQ  ADRL+KLLML R +K+PL++I++LKW+LGLP DY +S+V E
Sbjct: 124 DLDAEEELMYQSESYRQDVADRLLKLLMLVRTNKLPLNVIERLKWDLGLPHDYQKSLVHE 183

Query: 183 FPDYFKVVGHQNFASGWGTMQALELVCWNNELATSVLEK-MAAKGKPGSTSKGMPIT--- 242
           +PDYF +V  +N ASGW  ++ LELVCW NE+ATSV EK  AAK K  S  K   ++   
Sbjct: 184 YPDYFNIVVGKNSASGWKDLRDLELVCWRNEMATSVFEKHAAAKEKKASAKKKRALSGDS 243

Query: 243 ---------FPMKYSNGFEMDKKFKKWVDEWQKLPYISPYINATHLPPNSDESDKWSVAI 302
                    FPM++S GFEMDKK KKW+DEWQKLPY+SPY NA HL   SDESDKW VAI
Sbjct: 244 PSKEEEHCVFPMQFSRGFEMDKKLKKWIDEWQKLPYVSPYENAAHLSSKSDESDKWVVAI 303

Query: 303 LHEFLHMLVTKKTEKETVLGIGEYFGLRSRFKRALLHHPGIFYLSSKAGTYTVVLKEAYK 362
           LHE LH+LV KKT++E +L +GEY GLRSRFK+ALLHHPGIFYLS+K GTYTVVL+E YK
Sbjct: 304 LHELLHILVPKKTDRENLLCLGEYLGLRSRFKQALLHHPGIFYLSNKIGTYTVVLREGYK 363

Query: 363 RGSVIESSPLMIIRNKYLHLMNTVKEDSKTTSEHKSTRQQKQEQKEGSDDGSGKQNEAEL 422
           RG++IE+  LM +R++Y+HLMNTVKEDSK  S    + Q+K   K   D   GK  E   
Sbjct: 364 RGTIIENHQLMNMRSQYIHLMNTVKEDSKMVSVPSGSTQEK---KAVVDVPKGKGEE--- 423

Query: 423 FNSDDEDEDEEEDQGEDENASSNQNI-QADRKEDGRNKRHVDLKENSVRDRMRSSKRRNL 482
              +++DE EEE +GE  N+S  + +   D  E+  ++    ++++++ ++ R  ++ + 
Sbjct: 424 ---EEDDESEEEWEGELRNSSDTEFLYDDDSDEEDEDQSETSIEKHAINNKGRRGRKSHF 483

Query: 483 SAKRPSRDRDAKRERSNMSKRSSVRTK 494
             K PSR+ +        ++ S    K
Sbjct: 484 DGKTPSRNAERGTSGGRKARNSDFNGK 499

The following BLAST results are available for this feature:

BLAST of CmoCh19G011080.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPD1_ARATH	5.7e-30	27.58	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1	[more]

BLAST of CmoCh19G011080.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRP2_CUCSA	4.9e-198	74.95	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G420350 PE=4 SV=1	[more]
M5VK57_PRUPE	2.9e-137	55.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024610mg PE=4 SV=1	[more]
F6HYS7_VITVI	5.6e-133	58.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0102g00460 PE=4 SV=...	[more]
A5BJQ8_VITVI	6.2e-132	58.20	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018330 PE=4 SV=1	[more]
U5FSE7_POPTR	9.8e-130	54.39	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11980g PE=4 SV=1	[more]

BLAST of CmoCh19G011080.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71850.1	6.1e-123	52.37	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT4G24320.1	1.6e-78	41.37	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G48040.1	1.7e-56	34.58	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT2G39120.1	7.1e-55	36.34	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G58520.1	1.6e-51	31.73	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

BLAST of CmoCh19G011080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092602\|ref\|XP_008447139.1\|	1.9e-198	75.70	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X2 [Cucumis melo]	[more]
gi\|659092598\|ref\|XP_008447137.1\|	2.4e-198	75.76	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1-like isoform X1 [Cucumis melo]	[more]
gi\|778702601\|ref\|XP_004151592.2\|	3.2e-198	75.15	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X1 [Cucumis sativus]	[more]
gi\|778702604\|ref\|XP_011655231.1\|	7.1e-198	74.95	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 isoform X2 [Cucumis sativus]	[more]
gi\|645263644\|ref\|XP_008237329.1\|	2.8e-138	55.82	PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR021099	PORR_domain

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh19G011080	CmoCh19G011080	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh19G011080.1	CmoCh19G011080.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G011080.1.exon.1	CmoCh19G011080.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G011080.1.CDS.1	CmoCh19G011080.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 37..372 score: 6.7E
None	No IPR available	PANTHER	PTHR31476	FAMILY NOT NAMED	coord: 17..461 score: 1.0E
None	No IPR available	PANTHER	PTHR31476:SF16	F14O23.23 PROTEIN	coord: 17..461 score: 1.0E