CmoCh19G004990.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G004990.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr19 : 5933251 .. 5937067 (-)
Sequence length482
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAACACAGATTTGACTGATCATCTTGCTTTCTTTCTAGATTCTACCGTCCAAGGGTTTCTCGCCATGGCGTCTTCCGCTTCTTCGTCCGCTTCTTCTTCCGCTCCCGGCGCCTCCAAGTTCCTCGGCGACCTTCCTTCCCATGGCTACTTCTCCTCCACCGTTCCCTCCTCCAATCCGGTAATGCTTCTTGCACTTATTTCTCTTTTGAAATCATGCTCTTTTGTTTTCTGTTCTGTTCTGTTCCAAATTTGTGTATCCTCTTCTCATATTTGATACGTTTACATTAGGAAAATTTTAGTTAGTGAACAATTATGTATAGTTTAATCGATCATTTTGACCTGAAGCCACGGATATTATACAATTTTGTGTTGCATTTGAGTCTGTTCGCACGTTCAGGAGTGAGTTGAATTTATCTACGTTTTAAATTATAAATGATTGCTTTAAGCTTCTCTCGTGCTTTTAAGGGATGCTGTTGGGTTGCCTAATGCCATTTCATAGGCTTCCATAATGTTAGTGATCAAGGACCAGTTGTTTGCAGGTATATGAACTTAACAAGTTTTGAATCTATCCATGGCTAGGTTTTGTTATAATGCATTTTGGTGATTAGAGTGTTTGAGTTCTTGAGTTTGTTTTCCATCTAGTCTCAACTGTAGGATGTATGCGTGCCATTATGTTGGAAGATTTATAACCACATTATGGTATAAAGGTGTTTTTTGTGTTATCATCGCCTAAAAATCAACGTACTTTCTTTCTTTTCCTTGTTCTTTTCCCCTTTGGTACTTTCTAGTCATTTGTGTGTATTTATCGTGGTTAATATCTATATTGAAACGATATGTTTTTCAATATGTTCATGCAGGGAAGTATGCGAGTCTATATCTGCCTTCATGATACCTCACCCCCAGGTTATCTTTTATTTCTCTAAATATTCATTTTACCATAATGTAACAATTTATGTACATAAGACTGTAGACATACCATAATGCAACACATAAGTATGTAAGAACGAACCATTATTCATCAGATATTTGATGTACACAAGAATTGAGGAAGAAAATAACAAGGATAATCATAGTGCTTGTGGAGAACTCTACAAATGTTGGAATTGGAAATTTGTTTCTTATAGTTAGGGTTGCTGATTTGTTAATTTATAGATTTTATGAACGTACGCTGAGAAACCAACAAGTATTTGTGGATGTTACAGTCACATTATCAGGCATGAAATCTGAGATTCATCTTAAATAATGATCCTACTGAATAGTTCTTGCTAATTCATGACCTTATTTGAACAAGATCGGTTCTATAGGTTGTACAACTGTGTCCTCAAATCGTTCTTGCTGACGCAGTTATATTCCTTTTCGCAAGAGGCAACAATCTCACAGCCTGAAACACATGTCAGAAACTGGACTTATCATTAACAAATGAACTAACCACTTACCACTATATATGTATATTTATTTTGCCCAGTTACCTATTATGAACACAGCAAAACGTGGTAAATCTTTACACCCATTTTGCATCCAGAGGATCAAGAAATAAAGACAAACCAACAGAATATACTTATTAGATCTTTAATGCTAAAAAATTCCAGTTCAAAGGATGGAAAGGGAGTAGCTGCAGCCGAGTCTTCTCGAAAGAGGTACCAACATCTTTTTTTGAAAATAAAAGGATGATCTTTTTAGGTTGCTAGTTGGTCATTTTTAGTTGAAACTGTTGGATTTTGTTGCGTTTTCATATGGATTGGTGTTTCTTCACAAGTGCTTAATACATAATTTGGTTTTGGCATCTACATAGTATTGAGTCTTAGTTATGCTACACTGATATTTCCAGGGCTGGTGAAAAAATTTCAGATAGCAGAGCAAAGAGGGCTGTGCAAGTACGTTCAACCAAAGGTATGTTGTGGTCGATCATGTACAGAAAGTAAGTAGTGCCTGGTTGATTGACTCATTACTCATTGCAGATGTTCTTCACGAGAGCTAACTAAATCCTGCTTTTGTGTCTTTTTTATTTACCTAAAATTATTTTCTCATGTAATCCCTATATTTTTCATAAGCGTTATATATATTTGGTAAGAAACTGGACTTTTATTGAAAATATGTGTCGGTACAATAAAACAAGTAAAAAAAAAAAAAAAACACGGTCGGATGCTAACTACAAAAAGGACTCCTACATAAAAGAACAAGACCAATGTCATAATTACGGAACAGTCTAGTGACTGATGCCCAAATAAAAGTATTAAACCTCCTCCTAAACCCACCTCCCGAATTATCTCGACATCCCAACATTTTTTTTTTCTTAAGCATTATACAGATCAGGTGCTTTCCTGGACTCCTATATTAATTGTGTATAGAGAAAAAAGGTGATACCTATGTGCTGACTCCTCCTGAGTGAAAGAACAAGAGAAATTTCCCCTAGCCGGGTGGGGACTTGTTCTCTTTAACATGTAGAACCATTATCCACCACATGTAAAAAGTTCTGTATCTATAATATATAGGTAGTGATACTTTTCCCGTATTATAGATAATGGTTGTTCTACATATTAAAGAGAAAAGGTCCCACCCCAAGAACCCAGCATATCATACCTCTGGTGATTAACGTCTAGAAATATGTCCAACAGTTTAATAAGTTATTATTATTATGATATATCTGAAAATTATTCGAGGGCTACATAGATCTTAGGGGAGACTCTATGGTGTACTTTGTTCGAAGGGAGGATTGTTGGGAGGGAGTCTCACATTGACTAATGTAGGGGAATGATCATGTGTTTATAAAGTAAGAAATATATCTCCATTGGTATGGTGTCTTTTGGGGGAAGCCCAAAAGCAAAGCCACGAGAGTTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGATATATGATTCCTAACAAAAAGCCATTCAAGGGATGATATCTTTCAACTATTTTTTCTTTTTAAAAAAACATCCGTTTATAGTTTCATTAGAATTGTGTTCCAAATGTGATGATTAATAGTGGCTATGATGCATCCAGGAGCATCGAGCAGTGCAACACCGAGTAAGGATCTACAGAGTTTGACCGTAGAGAGGCTGCGTGCCCTTCTCAAGGCCAAAGGCCTTTCACTCAAAGGAAGGAAGGCAAGTATATTATATTGTAATTAATCTAGTTAAATAAGTAAGTTTGAAATTGTTAAAACCTTGTTTAAGATCACTCCTTTTCAAATCGAGTTATTGTTTAATTTTATACTTATAAATGCAATTTTCATATCATCAAAATTGGTTTGGAGTGATATTGCAAAATTACTCGAACATGTTCCAAGTTCCAAGTTTTATTGATCATGGTGTGTTTGAGAATTCTTTGACCAACCAACCAACCTGGTGCAGGATGACTTAATTGCCCGCCTGAGAAGCGTTGATGGTTAGCCAACCACTTAGAGAGTGCAACATCTGCAATCTCCATGAACACGAGCACAGGTGAAACCTCGACGTTATGGTTTACTCTTTTCTCGACATTTAAACGTGTAGTTAGGAATATAGTATACTTGAAGAAAGTTGAAATGACGGTGGTTTGGAGAATAAAAGTTAGTCATGGATATCTGTATTCATTTTGATGATGTGAAAAAACGATCACTGTTAAATTTTAGGGATAAAGTGAGAAAAGGGTATTTTTCTGAACCATAATTGAAAACTTCCAAATTCTTTGAGATGTTTTTGAAGGATTGAATTTTAGCTACGATGTCAGTTAAGAGCTAACCATCAACTCCAGTTTCGTAGTACATTTACGACAACAGGTTCCTTGGCCCGACCTCACGAACGGTAGGATGACACCTTCGGCCTAA

mRNA sequence

TTAACACAGATTTGACTGATCATCTTGCTTTCTTTCTAGATTCTACCGTCCAAGGGTTTCTCGCCATGGCGTCTTCCGCTTCTTCGTCCGCTTCTTCTTCCGCTCCCGGCGCCTCCAAGTTCCTCGGCGACCTTCCTTCCCATGGCTACTTCTCCTCCACCGTTCCCTCCTCCAATCCGGCTTCCATAATGTTAGTGATCAAGGACCAGTTGTTTGCAGGGCTGGTGAAAAAATTTCAGATAGCAGAGCAAAGAGGGCTGTGCAAGTACGTTCAACCAAAGGTATGTTGTGGTCGATCATGTACAGAAAGAGCATCGAGCAGTGCAACACCGAGTAAGGATCTACAGAGTTTGACCGTAGAGAGGCTGCGTGCCCTTCTCAAGGCCAAAGGCCTTTCACTCAAAGGAAGGAAGGCAATACATTTACGACAACAGGTTCCTTGGCCCGACCTCACGAACGGTAGGATGACACCTTCGGCCTAA

Coding sequence (CDS)

ATGGCGTCTTCCGCTTCTTCGTCCGCTTCTTCTTCCGCTCCCGGCGCCTCCAAGTTCCTCGGCGACCTTCCTTCCCATGGCTACTTCTCCTCCACCGTTCCCTCCTCCAATCCGGCTTCCATAATGTTAGTGATCAAGGACCAGTTGTTTGCAGGGCTGGTGAAAAAATTTCAGATAGCAGAGCAAAGAGGGCTGTGCAAGTACGTTCAACCAAAGGTATGTTGTGGTCGATCATGTACAGAAAGAGCATCGAGCAGTGCAACACCGAGTAAGGATCTACAGAGTTTGACCGTAGAGAGGCTGCGTGCCCTTCTCAAGGCCAAAGGCCTTTCACTCAAAGGAAGGAAGGCAATACATTTACGACAACAGGTTCCTTGGCCCGACCTCACGAACGGTAGGATGACACCTTCGGCCTAA
Homology
[Close]
BLAST of CmoCh19G004990.1 vs. TrEMBL
Match: A0A0A0LNX7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002080 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-14
Identity = 63/140 (45.00%), Postives = 85/140 (60.71%), Query Frame = 1 

Query: 8   SASSSAPGASKFLGDLPSHGYFSSTVPSSNPASIMLVI--------KDQ----------L 67
           S+SSS  GASKFLGDLPS G+FSSTVPSSNP S+ + I        +DQ          +
Sbjct: 4   SSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQNILI 63

Query: 68  FAGLVKKFQIAEQRGLC------KYVQPKVCCGRS------CTER-ASSSATPSKDLQSL 117
            + ++K     + +G+       K    K+   R+      C+ + AS++ TP+KDLQ+L
Sbjct: 64  RSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDLQNL 123

[Close]
BLAST of CmoCh19G004990.1 vs. TrEMBL
Match: M4F443_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-09
Identity = 61/149 (40.94%), Postives = 74/149 (49.66%), Query Frame = 1 

Query: 1   MASSASSSASSSAPGASKFLGDLPSHGYFSSTVPSSNPASIMLVIKDQ------------ 60
           M +S+S S+ SS   ASKFL DLPS G+ SSTV  SNP S+ + + +             
Sbjct: 1   MEASSSRSSESSDESASKFLSDLPSRGFLSSTVVPSNPGSLRVYVCEHDTSPPEGQLIKT 60

Query: 61  -----LFAGLVKKFQIAE-------QRGLCKYVQPKVCCGRSCTER--------ASSSAT 118
                L   L+ K Q  E       + G  K    K    RS  +R         SSS +
Sbjct: 61  NQQNILIRSLLLKKQKGESSSKGTPEDGPKKRAANKALDERSSAKRPATVSRQEGSSSRS 120

[Close]
BLAST of CmoCh19G004990.1 vs. TrEMBL
Match: A0A078FWB0_BRANA (BnaA09g06590D protein OS=Brassica napus GN=BnaA09g06590D PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-09
Identity = 61/149 (40.94%), Postives = 74/149 (49.66%), Query Frame = 1 

Query: 1   MASSASSSASSSAPGASKFLGDLPSHGYFSSTVPSSNPASIMLVIKDQ------------ 60
           M +S+S S+ SS   ASKFL DLPS G+ SSTV  SNP S+ + + +             
Sbjct: 1   MEASSSRSSESSDESASKFLSDLPSRGFLSSTVVPSNPGSLRVYVCEHDTSPPEGQLIKT 60

Query: 61  -----LFAGLVKKFQIAE-------QRGLCKYVQPKVCCGRSCTER--------ASSSAT 118
                L   L+ K Q  E       + G  K    K    RS  +R         SSS +
Sbjct: 61  NQQNILIRSLLLKKQKGESSSKGTPEDGPKKRAANKALDERSSAKRPATVSRQEGSSSRS 120

[Close]
BLAST of CmoCh19G004990.1 vs. TrEMBL
Match: S8DX37_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_10274 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.1e-09
Identity = 53/148 (35.81%), Postives = 74/148 (50.00%), Query Frame = 1 

Query: 6   SSSASSSAPGASKFLGDLPSHGYFSSTVPSSNPASIMLVI--------KDQLFAG----- 65
           +SS + S+ GASKFL +LPS G+FSSTVPSS P  I + +        +DQL        
Sbjct: 1   NSSTAGSSGGASKFLANLPSRGFFSSTVPSSQPGGIRVYLCDHDTSPPEDQLIKTNQTNI 60

Query: 66  LVKKFQIAEQRG-----------------LCKYVQPKVCCGRSCTERASSSAT------- 117
           L++  ++   +G                   +        G+   + +SSS         
Sbjct: 61  LIRSLKLKNSKGDSCSKEGKSTAENPRKRAAERALDNKASGKKAVQHSSSSPAGTSSRML 120

[Close]
BLAST of CmoCh19G004990.1 vs. TrEMBL
Match: A0A078IB93_BRANA (BnaCnng15870D protein OS=Brassica napus GN=BnaCnng15870D PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-08
Identity = 62/154 (40.26%), Postives = 77/154 (50.00%), Query Frame = 1 

Query: 1   MASSASSSASSSAPGASKFLGDLPSHGYFSSTVPSSNPASIMLVI--------------- 60
           M +S+S S+ SS   ASKFL DLPS G+ SSTV  SNP S+ + +               
Sbjct: 1   MEASSSRSSESSEETASKFLSDLPSRGFLSSTVVPSNPGSLRVYVCEHDTSPPEGQLIKT 60

Query: 61  --KDQLFAGLVKKFQIAE-------QRGLCKYVQPKVCCGRSCTER--------ASSSAT 120
             ++ L   L+ K Q  E       + G  K    K    RS  +R         SSS +
Sbjct: 61  NQQNILIRSLLLKKQKGESSSKGTPEDGPKKRAANKALDERSSAKRPATVSRQEGSSSRS 120

[Close]
BLAST of CmoCh19G004990.1 vs. TAIR10
Match: AT5G63460.4 (AT5G63460.4 SAP domain-containing protein)

HSP 1 Score: 48.9 bits (115), Expect = 2.9e-06
Identity = 56/163 (34.36%), Postives = 74/163 (45.40%), Query Frame = 1 

Query: 1   MASSASSSASSSAPGASKFLGDLPSHGYFSST---------------VPSSNPA--SIML 60
           M +S+S  + SS   ASKFL DLPS G+ SST                 +S P   S+ +
Sbjct: 1   MEASSSQPSDSSDQTASKFLSDLPSRGFLSSTVVSSNPGSLRVYICEHDTSPPVIGSLRI 60

Query: 61  V---IKDQLFAG-----LVKKFQIAEQRGLC--------------KYVQPKVCCGRSCTE 117
           +   IK QL        L++   + +Q+G                K    +    RS  +
Sbjct: 61  ISFRIKGQLIKTNQQNILIRSLLLKKQKGESSSKDSKGTAEDGPKKRAANRALDDRSSAK 120

[Close]
BLAST of CmoCh19G004990.1 vs. NCBI nr
Match: gi|659128928|ref|XP_008464442.1| (PREDICTED: uncharacterized protein LOC103502327 [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 4.7e-14
Identity = 62/140 (44.29%), Postives = 82/140 (58.57%), Query Frame = 1 

Query: 8   SASSSAPGASKFLGDLPSHGYFSSTVPSSNPASIMLVI--------KDQ----------L 67
           S+SSS  GASKFLGDLPS G+FSSTVPSSNP S+ + I        +DQ          +
Sbjct: 4   SSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQNILI 63

Query: 68  FAGLVKKFQIAEQRGLCKYVQPKVCCGRS------------CTER-ASSSATPSKDLQSL 117
            + ++K     + +G+      +   G              C+ + AS++ TPSKDLQ+L
Sbjct: 64  RSLMLKNSSSKDGKGVATAESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPSKDLQNL 123

[Close]
BLAST of CmoCh19G004990.1 vs. NCBI nr
Match: gi|449440560|ref|XP_004138052.1| (PREDICTED: uncharacterized protein LOC101215024 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 6.1e-14
Identity = 63/140 (45.00%), Postives = 85/140 (60.71%), Query Frame = 1 

Query: 8   SASSSAPGASKFLGDLPSHGYFSSTVPSSNPASIMLVI--------KDQ----------L 67
           S+SSS  GASKFLGDLPS G+FSSTVPSSNP S+ + I        +DQ          +
Sbjct: 4   SSSSSGHGASKFLGDLPSRGFFSSTVPSSNPGSMRVYICLHDTAPPEDQEIKTNQQNILI 63

Query: 68  FAGLVKKFQIAEQRGLC------KYVQPKVCCGRS------CTER-ASSSATPSKDLQSL 117
            + ++K     + +G+       K    K+   R+      C+ + AS++ TP+KDLQ+L
Sbjct: 64  RSLMLKNSSSKDGKGVATGESSRKRAGEKISDSRAKKAAQVCSSKGASNNETPTKDLQNL 123

[Close]
BLAST of CmoCh19G004990.1 vs. NCBI nr
Match: gi|674916319|emb|CDY16723.1| (BnaA09g06590D [Brassica napus])

HSP 1 Score: 69.3 bits (168), Expect = 5.9e-09
Identity = 61/149 (40.94%), Postives = 74/149 (49.66%), Query Frame = 1 

Query: 1   MASSASSSASSSAPGASKFLGDLPSHGYFSSTVPSSNPASIMLVIKDQ------------ 60
           M +S+S S+ SS   ASKFL DLPS G+ SSTV  SNP S+ + + +             
Sbjct: 1   MEASSSRSSESSDESASKFLSDLPSRGFLSSTVVPSNPGSLRVYVCEHDTSPPEGQLIKT 60

Query: 61  -----LFAGLVKKFQIAE-------QRGLCKYVQPKVCCGRSCTER--------ASSSAT 118
                L   L+ K Q  E       + G  K    K    RS  +R         SSS +
Sbjct: 61  NQQNILIRSLLLKKQKGESSSKGTPEDGPKKRAANKALDERSSAKRPATVSRQEGSSSRS 120

[Close]
BLAST of CmoCh19G004990.1 vs. NCBI nr
Match: gi|527195160|gb|EPS64507.1| (hypothetical protein M569_10274, partial [Genlisea aurea])

HSP 1 Score: 69.3 bits (168), Expect = 5.9e-09
Identity = 53/148 (35.81%), Postives = 74/148 (50.00%), Query Frame = 1 

Query: 6   SSSASSSAPGASKFLGDLPSHGYFSSTVPSSNPASIMLVI--------KDQLFAG----- 65
           +SS + S+ GASKFL +LPS G+FSSTVPSS P  I + +        +DQL        
Sbjct: 1   NSSTAGSSGGASKFLANLPSRGFFSSTVPSSQPGGIRVYLCDHDTSPPEDQLIKTNQTNI 60

Query: 66  LVKKFQIAEQRG-----------------LCKYVQPKVCCGRSCTERASSSAT------- 117
           L++  ++   +G                   +        G+   + +SSS         
Sbjct: 61  LIRSLKLKNSKGDSCSKEGKSTAENPRKRAAERALDNKASGKKAVQHSSSSPAGTSSRML 120

[Close]
BLAST of CmoCh19G004990.1 vs. NCBI nr
Match: gi|923699317|ref|XP_013659207.1| (PREDICTED: uncharacterized protein LOC106364123 isoform X2 [Brassica napus])

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 60/147 (40.82%), Postives = 74/147 (50.34%), Query Frame = 1 

Query: 1   MASSASSSASSSAPGASKFLGDLPSHGYFSSTVPSSNPASIMLVI--------------- 60
           M +S+S S+ SS   ASKFL DLPS G+ SSTV  SNP S+ + +               
Sbjct: 1   MEASSSRSSESSDESASKFLSDLPSRGFLSSTVVPSNPGSLRVYVCEHDTSPPEGQLIKT 60

Query: 61  --KDQLFAGLVKKFQIAE-------QRGLCKYVQPKVCCGRSCTER-------ASSSATP 117
             ++ L   L+ K Q  E       + G  K    K    RS  +R        SSS + 
Sbjct: 61  NQQNILIRSLLLKKQKGESSSKGTPEDGPKKRAANKALDERSSAKRPATVSRQGSSSRSG 120

The following BLAST results are available for this feature:
BLAST of CmoCh19G004990.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh19G004990.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LNX7_CUCSA4.2e-1445.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G002080 PE=4 SV=1[more]
M4F443_BRARP4.1e-0940.94Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A078FWB0_BRANA4.1e-0940.94BnaA09g06590D protein OS=Brassica napus GN=BnaA09g06590D PE=4 SV=1[more]
S8DX37_9LAMI4.1e-0935.81Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_10274 PE=4 SV=1[more]
A0A078IB93_BRANA1.6e-0840.26BnaCnng15870D protein OS=Brassica napus GN=BnaCnng15870D PE=4 SV=1[more]
BLAST of CmoCh19G004990.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G63460.42.9e-0634.36 SAP domain-containing protein[more]
BLAST of CmoCh19G004990.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659128928|ref|XP_008464442.1|4.7e-1444.29PREDICTED: uncharacterized protein LOC103502327 [Cucumis melo][more]
gi|449440560|ref|XP_004138052.1|6.1e-1445.00PREDICTED: uncharacterized protein LOC101215024 [Cucumis sativus][more]
gi|674916319|emb|CDY16723.1|5.9e-0940.94BnaA09g06590D [Brassica napus][more]
gi|527195160|gb|EPS64507.1|5.9e-0935.81hypothetical protein M569_10274, partial [Genlisea aurea][more]
gi|923699317|ref|XP_013659207.1|1.3e-0840.82PREDICTED: uncharacterized protein LOC106364123 isoform X2 [Brassica napus][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003034SAP_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh19G004990CmoCh19G004990gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh19G004990.1CmoCh19G004990.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G004990.1.CDS.5CmoCh19G004990.1.CDS.5CDS
CmoCh19G004990.1.CDS.4CmoCh19G004990.1.CDS.4CDS
CmoCh19G004990.1.CDS.3CmoCh19G004990.1.CDS.3CDS
CmoCh19G004990.1.CDS.2CmoCh19G004990.1.CDS.2CDS
CmoCh19G004990.1.CDS.1CmoCh19G004990.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G004990.1.five_prime_UTR.1CmoCh19G004990.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G004990.1.exon.5CmoCh19G004990.1.exon.5exon
CmoCh19G004990.1.exon.4CmoCh19G004990.1.exon.4exon
CmoCh19G004990.1.exon.3CmoCh19G004990.1.exon.3exon
CmoCh19G004990.1.exon.2CmoCh19G004990.1.exon.2exon
CmoCh19G004990.1.exon.1CmoCh19G004990.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003034SAP domainGENE3DG3DSA:1.10.720.30coord: 92..117
score: 5.
IPR003034SAP domainPROFILEPS50800SAPcoord: 93..127
score: 8
NoneNo IPR availableunknownSSF68906SAP domaincoord: 86..117
score: 6.7