CmoCh19G004270.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh19G004270.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Retrotransposon protein, putative, Ty1-copia subclass
Location	Cmo_Chr19 : 5139836 .. 5144042 (+)
Sequence length	1641

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACGGAACAGTGGAAGCTAAAGGATCGACAAGCCTTGGGGCTGATCCGGTTGACGCTATCCAGAAACGTGGCATTTAACATTATCAAGGAGAAGACAACGTCAGATCTATTGAAGGCGCTGACAAATATGTATGAAAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGGAGATTGTTCAATCTACAGATGTCTGAAAGTGGATCTATTGCTGATCATATAAATGAATTCAATATGATCCTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAAGATGAAATTAAAGCGTTGATTTTGATGTCATCCTTACCCGAGTCATGGGATACTGTTGTTGTCGCAATCAGGAGTTCTTGAGGATCTGATAAACTGAAGTTTGATGAAATTCGAGATGTAGTTCTCAGCGAAAGTACTCGCAAACGAGAAACTAGAGATTCATCAGGCAATGCTCTCAGTGTCGATCGAAGGGAAAGAAGTAAATCAAAGAGCTCAAACAAACATGGGGGATCAAAATCAAAGAACCGAGAAAAAGCTCCAAATAGACCAAATGTAACGTGTTGGAATTGTGGAGAAAAAGGTCACTTTCGGAAAGGTTGTACAAGACCAAAGAAGAAGCAGAATCACAAATCTGAAGATGATAATGATTCTATAAATTCAGCAGAAGATATTGGGGATGCTCTAATCCACAGCGTGGACAGTTTGATTGAATCCTGGATTTTGGATTCAGATGCATCTTTTCATTCGTCTCCAAATAAAGAGTTGTTCTGGAATTTCAAGTCTGGAAATCTCGAGAAGGTGTATCTTGCCGACAACAAAGATTTGGAGATTAAAGAAAAAGGAGATGTCTGCATAAAAACTCCGGCAGGAAATCAGCGGACATTAAAGAATGTCAGATATATTCCTGGTCTCAAAAAGAACCTGATCTCTATTGGTCAGTTGGACAGCACAGGTTATGCAACAAAGTTAGGGAAGAGTTCGTGGAAGATTATGAAGGGTGCTACGGTAGTGGCACGTGGCTCAAAATCTGGAACCTTATACACCACTACAGGGTGTATGAACATAGCTGTTGTTACTGAGAGTGCTTCAAATTCAAGTCTATGGCACAATAGACTTGGACATATGAGCGTGAAAGGAATGAAGACGATGGCCGCGAAAGGAGTTTTAGAAGGTTTGAAATCTGTTGATGTGGGTCGTTGTGAGAACTACGTTATGGGCAAGCAGAAACTAGTTAGCTTCACGAGGACTGCCAAAGAATTGAAGAAAGTGTGGTTGGAAATGGAACCATATGTGGAGCTAGGTTCGACGAAGCAAGTGGGAGTTGAGCTTGAGTTGTAAGAAAACTCACCTAGTGATGTTGTAGTAGATACTCATGAAACTTCTGAGACTACTGCTGAGAAACCAGATGTGGAGCATGGTTCCAAGACAATGAAGCAAGTGGGAGTTGAGCTTGAGTTGCAAGAAAACTCACCTAGTGATGTTGTAGCAGATACTCATGAAACTCTTGAGACTACTATTGAGGAACCAGATGTAAGAGCAAGGTTCCAAGACCACGAAGCAAGTGGGAGTTGAGCTTGAGTTGCAAGAAAACTCACCTATTGATATTGTAGCAGATACTCATGAAACTCCTAAGACTACTGCAGAGGAATTAGTAGTGGAGCAAGTGACACCTGAACCGGTGTTGAGAAGATCATCCAGTACTATCAGAGTACCAGATATGTATGTACCTTCATTACACTATCTGTTGCTGATGAAAGGGAACTACAACCCTTTGAGGAGGCCCACAGTTGGAGGATATAACGAAGTGGGAGCAAGCCATGGATGATGGGACGTCTAGGCTTCATGTACTAAGGCTGAGTACATGGCAATAGCTGAAGCTGGAAAGAAGACGATATGGATGATTGACTATCTGGAAGAATTGGGCAAGAAGCAGCATGAAAAGATTCTTTATAGAGATGGTCAGAGTGTCATACAGTTGGTGAGAAACCCGGTCTATTATTTAAAGATAAAACACGGAAGGCGATACCATTTCACTTGCAGGTTAGTGGAAGATGGTGATGTGTTTTGAGAAGATAGAGGGTGTGAAGAATCCAGCAAACATGTTGACAAAATGTGTTGATGTTGGAATATTGAGGTTGTGCAAAATCTTAATTGGTATGGTGCAGCGAAGATATTCATGATCGTTTGAGAATGAAATTCTTGGTTGACTGGATCAGTCTCCAAGTGGGAGAATTGTTAGGTTATGGAGCCTACTCTCTTATTTATAGCTTAGTCAACGGTTATATTTGGTAAAGCTATATCCGGTAAAGTTATATATGGTAAATAGCTATATATAGTAGATGGTTAAATCTGGTAAAACTATATACAATAAACTGAACCATATATATATCCCGTTCGGTAGAGCTTTGAAAAAGTACTTTCTGTATTCGCTGTATTCTCTCTTACAATACATACTTGAAGTCATCAATATAAATCCTTTAGCCAGAACTCTCCTTGCACTTTCTCTATCTTGTTCTTTGTGTTCATCTAGATCGAGTGTGTGCGTTGTTGTGCGATCCTAACAAGTGTTTGGGAAGAGGTCGAAATCCAACAACTTATGGGACCGAAATTAGTTCAGGTCACAAATGGGGCAGTCCAAAAAATCAGATCATGGATACTTACTACACAAAGCTGGCAAAAGAGTTATGCTGACACTCGAAGAAAGGATCTCGAGTTTGTGGTAGGCGAACATGTTTTCTTGAAGGTAGCGCCCATGAGGGATTTTAAGGTTTGGGAAAAGGGTAACTTTAACCCTAGGTTCATATGTCCCTTTGAAATCCTTGAGAGGATTGGCGTTGCGGCGTATAAGTTGGCATTGCCACCCACTCACCATTTTACAGAACATCTTTTTTTTATGTATCCATGTTGAGAAAATAAACACCGAACCCCACACACATCATTGAGCACGAAGCACTTCTGCTTCGCAAGGATCTATCATACGAAGAGGCCTCAATCCAAATTATAGCTCAAGATGTCAGGTGATCGCGAAACAAGGAGTTTCCCGTTGTCAAAATCTTTTAGGATAACCATCTGGATAGCGAGGCTACTTGAGAACGTGAGGATGACGTTAGGAAGTCTTACCCTAAACTTTTTCAAGAACAACCAACTTTTGATGACCAATGTTTCTAAAGAGGAGAGAATTTGTAACACCCGAGCCCCGATGAGAAACTTAAAACCTAAGCTTTTCCTTTAAGTTGAACTTCTGAGAATTTATTGAGGATCTCAGAGACCCAACTTTGAAACAAGGTAGAAGAGAAAAATGGTTAGAAAAATCTCATCAACTCAAGAAAAATATAAAAAGAAAAATGGTCAAACTCAACCCGAGAGGCTTAATTTGGTCATCCTGTCGTCTTCCTCGTTAAGAACCTAAAATATAGGTTAGTAAAAGATAAATAAAATAAAGTAAATAGAAATGGAAAGGAAAGAGAGGAAAAGAAAAAAAGAAAATAAAATAGAAAGGGAAAGAAGGTACTAGAGAGAAGGAGAAGTAACAACCACATTCCGATCCGGCCACAAGGAGTCTGATTCCAGCCGAGATTTCTTCAAAAATCCTTCACAAAACCTATAGAAAGCATTCTATACCATTGAATCGTCCAAAACCGTCAAAGAACGAAGAAAATCCATAGGTAAGTTCTTGACCTTTTGCTTTCGAATTTTACTCAGATCTATGAGAAATATGAGGATTTATATTCTAAAATTTGAGTATGTTAATCTAGAGAGGATTTCACTCATAATCCGTGAAGGAAGTCTTGATCAATTCAGATCGAAAATAGGAGTTCCAGCAGTCACCAAATTGATGTGAGTATTGATATTTCTTACCAACTTTGGACTAAGTTAATTATGTCTTGGTTAAAAATAAGTTATAAGAAAAATACCTCGTGATTGGATATAAACTCTATAAATCTCGTGAAGGAATCGTATTAATCCGAGTTAAGTAAGAAGAAATAGAAAAATTTAAAGAAAATAGAAAATAATCGATTTTCTGAAAAATCGCAGAGATGAAAGGAAGAAGATGAACGATAGAGGGACGTGTGTCAAGCAAGGAGAGAGTCACGCGTCGCTGGAAGGTGGGACACGTGTCAAGTGTGTAATGGCGGAGGAAACTAACGGAAAAATCTTGCATTGGGTAGGATTTGAAGGCTCGCGCCCGCAACTAAACTCGTGA

mRNA sequence

ATGACCACGGAACAGTGGAAGCTAAAGGATCGACAAGCCTTGGGGCTGATCCGGTTGACGCTATCCAGAAACGTGGCATTTAACATTATCAAGGAGAAGACAACGTCAGATCTATTGAAGGCGCTGACAAATATCGAAAGTACTCGCAAACGAGAAACTAGAGATTCATCAGGCAATGCTCTCAGTGTCGATCGAAGGGAAAGAAGTAAATCAAAGAGCTCAAACAAACATGGGGGATCAAAATCAAAGAACCGAGAAAAAGCTCCAAATAGACCAAATGTAACGTGTTGGAATTGTGGAGAAAAAGGTCACTTTCGGAAAGGTTGTACAAGACCAAAGAAGAAGCAGAATCACAAATCTGAAGATGATAATGATTCTATAAATTCAGCAGAAGATATTGGGGATGCTCTAATCCACAGCGTGGACAGTTTGATTGAATCCTGGATTTTGGATTCAGATGCATCTTTTCATTCGTCTCCAAATAAAGAGTTGTTCTGGAATTTCAAGTCTGGAAATCTCGAGAAGGTGTATCTTGCCGACAACAAAGATTTGGAGATTAAAGAAAAAGGAGATGTCTGCATAAAAACTCCGGCAGGAAATCAGCGGACATTAAAGAATGTCAGATATATTCCTGGTCTCAAAAAGAACCTGATCTCTATTGGTCAGTTGGACAGCACAGGTTATGCAACAAAGTTAGGGAAGAGTTCGTGGAAGATTATGAAGGGTGCTACGGTAGTGGCACGTGGCTCAAAATCTGGAACCTTATACACCACTACAGGGTGTATGAACATAGCTGTTGTTACTGAGAGTGCTTCAAATTCAAGTCTATGGCACAATAGACTTGGACATATGAGCGTGAAAGGAATGAAGACGATGGCCGCGAAAGGAGTTTTAGAAGGTTTGAAATCTGTTGATGTGGGTCGTTGTGAGAACTACGTTATGGGCAAGCAGAAACTAGTTAGCTTCACGAGGACTGCCAAAGAATTGAAGAAAGTGTGGTTGGAAATGGAACCATATGTGGAGCTAGATACTCATGAAACTTCTGAGACTACTGCTGAGAAACCAGATGTGGAGCATGGTTCCAAGACAATGAAGCAAGTGGGAGTTGAGCTTGAGTTGCAAGAAAACTCACCTAGTGATGTTGTAGCAGATACTCATGAAACTCTTGAGACTACTATTGAGGAACCAGATGCTTCATGTACTAAGGCTGAGTACATGGCAATAGCTGAAGCTGGAAAGAAGACGATATGGATGATTGACTATCTGGAAGAATTGGGCAAGAAGCAGCATGAAAAGATTCTTTATAGAGATGGTCAGAGTGTCATACAGTTGAAAGCATTCTATACCATTGAATCGTCCAAAACCGTCAAAGAACGAAGAAAATCCATAGAGAGGATTTCACTCATAATCCGTGAAGGAAGTCTTGATCAATTCAGATCGAAAATAGGAGTTCCAGCAGTCACCAAATTGATAGATGAAAGGAAGAAGATGAACGATAGAGGGACGTGTGTCAAGCAAGGAGAGAGTCACGCGTCGCTGGAAGGTGGGACACGTGTCAAGTGTGTAATGGCGGAGGAAACTAACGGAAAAATCTTGCATTGGGTAGGATTTGAAGGCTCGCGCCCGCAACTAAACTCGTGA

Coding sequence (CDS)

ATGACCACGGAACAGTGGAAGCTAAAGGATCGACAAGCCTTGGGGCTGATCCGGTTGACGCTATCCAGAAACGTGGCATTTAACATTATCAAGGAGAAGACAACGTCAGATCTATTGAAGGCGCTGACAAATATCGAAAGTACTCGCAAACGAGAAACTAGAGATTCATCAGGCAATGCTCTCAGTGTCGATCGAAGGGAAAGAAGTAAATCAAAGAGCTCAAACAAACATGGGGGATCAAAATCAAAGAACCGAGAAAAAGCTCCAAATAGACCAAATGTAACGTGTTGGAATTGTGGAGAAAAAGGTCACTTTCGGAAAGGTTGTACAAGACCAAAGAAGAAGCAGAATCACAAATCTGAAGATGATAATGATTCTATAAATTCAGCAGAAGATATTGGGGATGCTCTAATCCACAGCGTGGACAGTTTGATTGAATCCTGGATTTTGGATTCAGATGCATCTTTTCATTCGTCTCCAAATAAAGAGTTGTTCTGGAATTTCAAGTCTGGAAATCTCGAGAAGGTGTATCTTGCCGACAACAAAGATTTGGAGATTAAAGAAAAAGGAGATGTCTGCATAAAAACTCCGGCAGGAAATCAGCGGACATTAAAGAATGTCAGATATATTCCTGGTCTCAAAAAGAACCTGATCTCTATTGGTCAGTTGGACAGCACAGGTTATGCAACAAAGTTAGGGAAGAGTTCGTGGAAGATTATGAAGGGTGCTACGGTAGTGGCACGTGGCTCAAAATCTGGAACCTTATACACCACTACAGGGTGTATGAACATAGCTGTTGTTACTGAGAGTGCTTCAAATTCAAGTCTATGGCACAATAGACTTGGACATATGAGCGTGAAAGGAATGAAGACGATGGCCGCGAAAGGAGTTTTAGAAGGTTTGAAATCTGTTGATGTGGGTCGTTGTGAGAACTACGTTATGGGCAAGCAGAAACTAGTTAGCTTCACGAGGACTGCCAAAGAATTGAAGAAAGTGTGGTTGGAAATGGAACCATATGTGGAGCTAGATACTCATGAAACTTCTGAGACTACTGCTGAGAAACCAGATGTGGAGCATGGTTCCAAGACAATGAAGCAAGTGGGAGTTGAGCTTGAGTTGCAAGAAAACTCACCTAGTGATGTTGTAGCAGATACTCATGAAACTCTTGAGACTACTATTGAGGAACCAGATGCTTCATGTACTAAGGCTGAGTACATGGCAATAGCTGAAGCTGGAAAGAAGACGATATGGATGATTGACTATCTGGAAGAATTGGGCAAGAAGCAGCATGAAAAGATTCTTTATAGAGATGGTCAGAGTGTCATACAGTTGAAAGCATTCTATACCATTGAATCGTCCAAAACCGTCAAAGAACGAAGAAAATCCATAGAGAGGATTTCACTCATAATCCGTGAAGGAAGTCTTGATCAATTCAGATCGAAAATAGGAGTTCCAGCAGTCACCAAATTGATAGATGAAAGGAAGAAGATGAACGATAGAGGGACGTGTGTCAAGCAAGGAGAGAGTCACGCGTCGCTGGAAGGTGGGACACGTGTCAAGTGTGTAATGGCGGAGGAAACTAACGGAAAAATCTTGCATTGGGTAGGATTTGAAGGCTCGCGCCCGCAACTAAACTCGTGA

Homology

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BLAST of CmoCh19G004270.1 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 6.3e-38
Identity = 114/332 (34.34%), Postives = 173/332 (52.11%), Query Frame = 1


Query: 24  NVAFNIIKEKTT---SDLLKALTNIESTRKRETRDSSGNALSVDRRERSKSKSSNKHGGS 83
           N+A  I+  KTT    D+  AL   E  RK+   ++ G AL  + R RS  +SSN +G S
Sbjct: 158 NLATTILHGKTTIELKDVTSALLLNEKMRKKP--ENQGQALITEGRGRSYQRSSNNYGRS 217

Query: 84  ----KSKNREKAPNRPNVTCWNCGEKGHFRKGCTRPKKKQNHKSEDDNDSINSAEDIGDA 143
               KSKNR K+  R    C+NC + GHF++ C  P+K +   S   ND  N+A     A
Sbjct: 218 GARGKSKNRSKSRVR---NCYNCNQPGHFKRDCPNPRKGKGETSGQKNDD-NTA-----A 277

Query: 144 LIHSVDSLI----------------ESWILDSDASFHSSPNKELFWNFKSGNLEKVYLAD 203
           ++ + D+++                  W++D+ AS H++P ++LF  + +G+   V + +
Sbjct: 278 MVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGN 337

Query: 204 NKDLEIKEKGDVCIKTPAGNQRTLKNVRYIPGLKKNLISIGQLDSTGYATKLGKSSWKIM 263
               +I   GD+CIKT  G    LK+VR++P L+ NLIS   LD  GY +      W++ 
Sbjct: 338 TSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLT 397

Query: 264 KGATVVARGSKSGTLYTTTG--CMNIAVVTESASNSSLWHNRLGHMSVKGMKTMAAKGVL 323
           KG+ V+A+G   GTLY T    C       +   +  LWH R+GHMS KG++ +A K ++
Sbjct: 398 KGSLVIAKGVARGTLYRTNAEICQGELNAAQDEISVDLWHKRMGHMSEKGLQILAKKSLI 457

Query: 324 EGLKSVDVGRCENYVMGKQKLVSFTRTAKELK 331
              K   V  C+  + GKQ  VSF +T+ E K
Sbjct: 458 SYAKGTTVKPCDYCLFGKQHRVSF-QTSSERK 477

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BLAST of CmoCh19G004270.1 vs. Swiss-Prot
Match: M300_ARATH (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.8e-06
Identity = 27/89 (30.34%), Postives = 48/89 (53.93%), Query Frame = 1


Query: 238 KIMKGATVVARGSKSGTLYTTTGCMNIA---VVTESASNSSLWHNRLGHMSVKGMKTMAA 297
           K++KG   + +G++  +LY   G +      +   +   + LWH+RL HMS +GM+ +  
Sbjct: 30  KVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGMELLVK 89

Query: 298 KGVLEGLKSVDVGRCENYVMGKQKLVSFT 324
           KG L+  K   +  CE+ + GK   V+F+
Sbjct: 90  KGFLDSSKVSSLKFCEDCIYGKTHRVNFS 118

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BLAST of CmoCh19G004270.1 vs. TrEMBL
Match: A0A151TNK0_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022239 PE=4 SV=1)

HSP 1 Score: 277.7 bits (709), Expect = 3.0e-71
Identity = 157/321 (48.91%), Postives = 210/321 (65.42%), Query Frame = 1


Query: 21  LSRNVAFNIIKEKTTSDLLKALTNIESTRKRETRD----SSGNALSVDRRERSKSKSSNK 80
           +S +   N +K     DL+ +    E  R+R++ +    +S +AL+ + R R+  K  N 
Sbjct: 140 VSSSARDNKLKLNDIRDLILS----EDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNS 199

Query: 81  HGGSKSKNREKAPNRPNVTCWNCGEKGHFRKGCTRPKKKQNHKSEDDNDSINSAED-IGD 140
            G SKS+ + +   R ++ CWNC ++GHF   C  PKK +NHK  DD++S N+A D I D
Sbjct: 200 RGRSKSRAKGQPKFRNDIVCWNCDKRGHFTNQCKAPKKNKNHKKRDDDESANAATDEIDD 259

Query: 141 ALIHSVDSLIESWILDSDASFHSSPNKELFWNFKSGNLEKVYLADNKDLEIKEKGDVCIK 200
           ALI S+DS IESWI+DS ASFH++P+ EL  N+ SG   KVYLAD K L I  KGD+ I+
Sbjct: 260 ALICSLDSPIESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAIR 319

Query: 201 TPAGNQRTLKNVRYIPGLKKNLISIGQLDSTGYATKLGKSSWKIMKGATVVARGSKSGTL 260
           T +G+  TLKNVR+IP LK+NLIS+GQLD  G+ T  G  +WK+ KG  +VARG K G+L
Sbjct: 320 TSSGSHWTLKNVRHIPALKRNLISVGQLDDEGHETTFGDGAWKVKKGNLIVARGKKRGSL 379

Query: 261 YTTTGCMNIAVVTESASNSSLWHNRLGHMSVKGMKTMAAKGVLEGLKSVDVGRCENYVMG 320
           Y      N+  VTE+A+NS LWH RLGHMS KGMK MA KG L  LK VDVG CE+ ++G
Sbjct: 380 YMVAD-ENMIAVTEAANNSFLWHQRLGHMSEKGMKLMATKGKLSKLKHVDVGTCEHCILG 439

Query: 321 KQKLVSFTRTAKELKKVWLEM 337
           KQ+ +SF+R  K LK   LE+
Sbjct: 440 KQRKISFSRQGKTLKTERLEL 455

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BLAST of CmoCh19G004270.1 vs. TrEMBL
Match: A0A151QVU7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_044546 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.7e-71
Identity = 155/315 (49.21%), Postives = 207/315 (65.71%), Query Frame = 1


Query: 21  LSRNVAFNIIKEKTTSDLLKALTNIESTRKRETRD----SSGNALSVDRRERSKSKSSNK 80
           +S +   N +K     DL+ +    E  R+R++ +    +S +AL+ + R R+  K  N 
Sbjct: 162 VSSSARDNKLKLNDIRDLILS----EDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNS 221

Query: 81  HGGSKSKNREKAPNRPNVTCWNCGEKGHFRKGCTRPKKKQNHKSEDDNDSINSAED-IGD 140
            G SKS+ + +   R ++ CWNC ++GHF   C  PKK +NHK  DD++S N+A D I D
Sbjct: 222 RGRSKSRAKGQPKFRNDIVCWNCDKRGHFTNQCKAPKKNKNHKKRDDDESANAATDEIDD 281

Query: 141 ALIHSVDSLIESWILDSDASFHSSPNKELFWNFKSGNLEKVYLADNKDLEIKEKGDVCIK 200
           ALI S+DS IESWI+DS ASFH++P+ EL  N+ SG   KVYLAD K L I  KGD+ I+
Sbjct: 282 ALICSLDSPIESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAIR 341

Query: 201 TPAGNQRTLKNVRYIPGLKKNLISIGQLDSTGYATKLGKSSWKIMKGATVVARGSKSGTL 260
           T +G+  TLKNVR+IP LK+NLIS+GQLD  G+ T  G  +WK+ KG  +VARG K G+L
Sbjct: 342 TSSGSHWTLKNVRHIPALKRNLISVGQLDDEGHETTFGDGAWKVKKGNLIVARGKKRGSL 401

Query: 261 YTTTGCMNIAVVTESASNSSLWHNRLGHMSVKGMKTMAAKGVLEGLKSVDVGRCENYVMG 320
           Y      N+  VTE+A+NS LWH RLGHMS KGMK MA KG L  LK VDVG CE+ ++G
Sbjct: 402 YMVAD-ENMIAVTEAANNSFLWHQRLGHMSEKGMKLMATKGKLSKLKHVDVGTCEHCILG 461

Query: 321 KQKLVSFTRTAKELK 331
           KQ+ +SF+R  K LK
Sbjct: 462 KQRKISFSRQGKTLK 471

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BLAST of CmoCh19G004270.1 vs. TrEMBL
Match: A5BPB3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034935 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 6.1e-64
Identity = 152/388 (39.18%), Postives = 230/388 (59.28%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNVAFNIIK----------------------------- 60
           M  E+W L DRQ LG+IRLTLSR+VA N++K                             
Sbjct: 47  MKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSEIDFDDEIRALIVLASL 106

Query: 61  -----------------EKTTSDLLKALTNIESTRKRETRDSSGN--ALSVDRRERSKSK 120
                            EK   + ++ L   E  R+R+  ++SG+  AL+++ R R  ++
Sbjct: 107 PNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNR 166

Query: 121 SSNK---HGGSKSKNREKAPNRPNVTCWNCGEKGHFRKGCTRPKKKQNHKSEDDNDSINS 180
           +SN+   +  + ++NR K+ +   V CWNCG+ GHF++ C  PKKK      +++DS N+
Sbjct: 167 NSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHFKRQCKSPKKK------NEDDSANA 226

Query: 181 A-EDIGDALIHSVDSLIESWILDSDASFHSSPNKELFWNFKSGNLEKVYLADNKDLEIKE 240
             E++ DAL+ +VDS ++ W+LDS ASFH++P++E+  N+ +G+  KVYLAD   L++  
Sbjct: 227 VTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVG 286

Query: 241 KGDVCIKTPAGNQRTLKNVRYIPGLKKNLISIGQLDSTGYATKLGKSSWKIMKGATVVAR 300
            GDV I  P G+   L+ VR+IP L++NLIS+GQLD  G+A      +WK+ KGA V+AR
Sbjct: 287 LGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLAR 346

Query: 301 GSKSGTLYTTTGCMNIAVVTESASNSSLWHNRLGHMSVKGMKTMAAKGVLEGLKSVDVGR 337
           G K+GTLY T+   +   V ++++++SLWH RLGHMS KGMK + +KG L  LKS+D   
Sbjct: 347 GKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDM 406

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BLAST of CmoCh19G004270.1 vs. TrEMBL
Match: K4BJ49_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 9.1e-60
Identity = 147/284 (51.76%), Postives = 165/284 (58.10%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNVAFNIIK----------------------------- 60
           MT E+WKLKDRQALGLIRLTLSRNVAFNI+K                             
Sbjct: 24  MTEEKWKLKDRQALGLIRLTLSRNVAFNIVKEKTTSGLLKALSNMYEKPSAMNKVFILMA 83

Query: 61  -------------------EKTTSDLLKALTNIESTRKRETRDSSGNALSVDRRERSKSK 120
                              EK   D +  +   ES  KRE  DSSG+ALSVDRR  SK+K
Sbjct: 84  SLPESWDTVVAEISSSRGSEKLKFDEICDVVLSESIHKREVGDSSGSALSVDRRGISKTK 143

Query: 121 SSNKHGGSKSKNREKAPNRPNVTCWNCGEKGHFRKGCTRPKKKQNHKSEDDNDSINSAED 180
             N+H  SKSKNR K+ NR NVTCWNCGEKGHFR  CT P                    
Sbjct: 144 GQNQHSRSKSKNRGKSLNRSNVTCWNCGEKGHFRTNCTNP-------------------- 203

Query: 181 IGDALIHSVDSLIESWILDSDASFHSSPNKELFWNFKSGNLEKVYLADNKDLEIKEKGDV 237
                       +ESWILDS ASFHSSP+KELF NFKSG+  KVYLADNK LEI+ KGDV
Sbjct: 204 ------------VESWILDSGASFHSSPSKELFQNFKSGDFGKVYLADNKTLEIEGKGDV 263

[Close]

BLAST of CmoCh19G004270.1 vs. TrEMBL
Match: A5B0E4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022906 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.0e-59
Identity = 143/343 (41.69%), Postives = 208/343 (60.64%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNVAFNIIKEKTTSDLLKALTNI------ESTRKRETR 60
           M  E+W L D+Q L +IRLTLSR+VA N++KEKTT+DL+KAL+         ST K + +
Sbjct: 47  MKAEEWALLDKQVLEVIRLTLSRSVAHNVVKEKTTTDLMKALSEAMRMVVSNSTGKEKLK 106

Query: 61  DSSGNALSVDRRERSKSKSSNKHGGSKSKNREKAPNRPNVTCWNCGEKGHFRKGCTRPKK 120
            +    L +    R +        GS    + +              KGHF++ C  PKK
Sbjct: 107 YNDIRDLILVEEIRRRDAGETSRSGSALNLKTRG-------------KGHFKRQCKNPKK 166

Query: 121 KQNHKSEDDNDSINSA-EDIGDALIHSVDSLIESWILDSDASFHSSPNKELFWNFKSGNL 180
           K      +++DS N+  E++ DAL+ +VDS ++ W+LDS  SFH+ P++E+  N+ +G+ 
Sbjct: 167 K------NEDDSANAVTEEVQDALLLTVDSPLDDWVLDSGTSFHTIPHREIIQNYIAGDF 226

Query: 181 EKVYLADNKDLEIKEKGDVCIKTPAGNQRTLKNVRYIPGLKKNLISIGQLDSTGYATKLG 240
            KVYLAD   L++   GDV I  P G+   L+ VR+IP L++NLISIGQLD  G+A    
Sbjct: 227 GKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISIGQLDDEGHAILFV 286

Query: 241 KSSWKIMKGATVVARGSKSGTLYTTTGCMNIAVVTESASNSSLWHNRLGHMSVKGMKTMA 300
             +WK+ KGA V+ARG K+GTLY T+   +   V +++ ++S+WH RLGHMS KGMK + 
Sbjct: 287 GGTWKVTKGARVLARGKKTGTLYMTSCPRDTIAVADASIDTSIWHRRLGHMSEKGMKMLL 346

Query: 301 AKGVLEGLKSVDVGRCENYVMGKQKLVSFTRTAKELKKVWLEM 337
           +KG L  LKS+D   CE+ ++GKQK VSF +T +  K   LE+
Sbjct: 347 SKGKLPELKSIDFDMCESCILGKQKKVSFLKTGRTPKAEKLEL 370

[Close]

BLAST of CmoCh19G004270.1 vs. TAIR10
Match: ATMG00300.1 (ATMG00300.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-07
Identity = 27/89 (30.34%), Postives = 48/89 (53.93%), Query Frame = 1


Query: 238 KIMKGATVVARGSKSGTLYTTTGCMNIA---VVTESASNSSLWHNRLGHMSVKGMKTMAA 297
           K++KG   + +G++  +LY   G +      +   +   + LWH+RL HMS +GM+ +  
Sbjct: 30  KVLKGCRTILKGNRHDSLYILQGSVETGESNLAETAKDETRLWHSRLAHMSQRGMELLVK 89

Query: 298 KGVLEGLKSVDVGRCENYVMGKQKLVSFT 324
           KG L+  K   +  CE+ + GK   V+F+
Sbjct: 90  KGFLDSSKVSSLKFCEDCIYGKTHRVNFS 118

[Close]

BLAST of CmoCh19G004270.1 vs. TAIR10
Match: AT3G21000.1 (AT3G21000.1 Gag-Pol-related retrotransposon family protein)

HSP 1 Score: 49.3 bits (116), Expect = 8.8e-06
Identity = 35/131 (26.72%), Postives = 63/131 (48.09%), Query Frame = 1


Query: 115 KQNHKSEDDNDSINSAED------IGDALIHSVDSL------IESWILDSDASFHSSPNK 174
           K NH  ED    I++ ++      + D  + +V +L       + WI+   A  + +P  
Sbjct: 235 KNNHNQEDCKFRIHTDKEEKEDEIVVDYRLETVPNLGAKTYDDDIWIIHKMAPINMTPYV 294

Query: 175 ELFWNFKSGNLEKVYLADNKDLEIKEKGDVCIKTPAGNQRTLKNVRYIPGLKKNLISIGQ 234
           + F          V   D   L ++ KGDV I+   G ++T++NV ++PGL +N++S G+
Sbjct: 295 KYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGLNRNVLSFGK 354

[Close]

BLAST of CmoCh19G004270.1 vs. NCBI nr
Match: gi|1012357422|gb|KYP68607.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 277.7 bits (709), Expect = 4.3e-71
Identity = 157/321 (48.91%), Postives = 210/321 (65.42%), Query Frame = 1


Query: 21  LSRNVAFNIIKEKTTSDLLKALTNIESTRKRETRD----SSGNALSVDRRERSKSKSSNK 80
           +S +   N +K     DL+ +    E  R+R++ +    +S +AL+ + R R+  K  N 
Sbjct: 140 VSSSARDNKLKLNDIRDLILS----EDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNS 199

Query: 81  HGGSKSKNREKAPNRPNVTCWNCGEKGHFRKGCTRPKKKQNHKSEDDNDSINSAED-IGD 140
            G SKS+ + +   R ++ CWNC ++GHF   C  PKK +NHK  DD++S N+A D I D
Sbjct: 200 RGRSKSRAKGQPKFRNDIVCWNCDKRGHFTNQCKAPKKNKNHKKRDDDESANAATDEIDD 259

Query: 141 ALIHSVDSLIESWILDSDASFHSSPNKELFWNFKSGNLEKVYLADNKDLEIKEKGDVCIK 200
           ALI S+DS IESWI+DS ASFH++P+ EL  N+ SG   KVYLAD K L I  KGD+ I+
Sbjct: 260 ALICSLDSPIESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAIR 319

Query: 201 TPAGNQRTLKNVRYIPGLKKNLISIGQLDSTGYATKLGKSSWKIMKGATVVARGSKSGTL 260
           T +G+  TLKNVR+IP LK+NLIS+GQLD  G+ T  G  +WK+ KG  +VARG K G+L
Sbjct: 320 TSSGSHWTLKNVRHIPALKRNLISVGQLDDEGHETTFGDGAWKVKKGNLIVARGKKRGSL 379

Query: 261 YTTTGCMNIAVVTESASNSSLWHNRLGHMSVKGMKTMAAKGVLEGLKSVDVGRCENYVMG 320
           Y      N+  VTE+A+NS LWH RLGHMS KGMK MA KG L  LK VDVG CE+ ++G
Sbjct: 380 YMVAD-ENMIAVTEAANNSFLWHQRLGHMSEKGMKLMATKGKLSKLKHVDVGTCEHCILG 439

Query: 321 KQKLVSFTRTAKELKKVWLEM 337
           KQ+ +SF+R  K LK   LE+
Sbjct: 440 KQRKISFSRQGKTLKTERLEL 455

[Close]

BLAST of CmoCh19G004270.1 vs. NCBI nr
Match: gi|1012322120|gb|KYP34487.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 276.2 bits (705), Expect = 1.3e-70
Identity = 155/315 (49.21%), Postives = 207/315 (65.71%), Query Frame = 1


Query: 21  LSRNVAFNIIKEKTTSDLLKALTNIESTRKRETRD----SSGNALSVDRRERSKSKSSNK 80
           +S +   N +K     DL+ +    E  R+R++ +    +S +AL+ + R R+  K  N 
Sbjct: 162 VSSSARDNKLKLNDIRDLILS----EDVRRRDSEEPSSSTSSSALNTESRGRTTQKGYNS 221

Query: 81  HGGSKSKNREKAPNRPNVTCWNCGEKGHFRKGCTRPKKKQNHKSEDDNDSINSAED-IGD 140
            G SKS+ + +   R ++ CWNC ++GHF   C  PKK +NHK  DD++S N+A D I D
Sbjct: 222 RGRSKSRAKGQPKFRNDIVCWNCDKRGHFTNQCKAPKKNKNHKKRDDDESANAATDEIDD 281

Query: 141 ALIHSVDSLIESWILDSDASFHSSPNKELFWNFKSGNLEKVYLADNKDLEIKEKGDVCIK 200
           ALI S+DS IESWI+DS ASFH++P+ EL  N+ SG   KVYLAD K L I  KGD+ I+
Sbjct: 282 ALICSLDSPIESWIMDSGASFHTTPSNELLTNYVSGRFGKVYLADGKPLNIVGKGDIAIR 341

Query: 201 TPAGNQRTLKNVRYIPGLKKNLISIGQLDSTGYATKLGKSSWKIMKGATVVARGSKSGTL 260
           T +G+  TLKNVR+IP LK+NLIS+GQLD  G+ T  G  +WK+ KG  +VARG K G+L
Sbjct: 342 TSSGSHWTLKNVRHIPALKRNLISVGQLDDEGHETTFGDGAWKVKKGNLIVARGKKRGSL 401

Query: 261 YTTTGCMNIAVVTESASNSSLWHNRLGHMSVKGMKTMAAKGVLEGLKSVDVGRCENYVMG 320
           Y      N+  VTE+A+NS LWH RLGHMS KGMK MA KG L  LK VDVG CE+ ++G
Sbjct: 402 YMVAD-ENMIAVTEAANNSFLWHQRLGHMSEKGMKLMATKGKLSKLKHVDVGTCEHCILG 461

Query: 321 KQKLVSFTRTAKELK 331
           KQ+ +SF+R  K LK
Sbjct: 462 KQRKISFSRQGKTLK 471

[Close]

BLAST of CmoCh19G004270.1 vs. NCBI nr
Match: gi|147798867|emb|CAN65867.1| (hypothetical protein VITISV_034935 [Vitis vinifera])

HSP 1 Score: 253.4 bits (646), Expect = 8.7e-64
Identity = 152/388 (39.18%), Postives = 230/388 (59.28%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNVAFNIIK----------------------------- 60
           M  E+W L DRQ LG+IRLTLSR+VA N++K                             
Sbjct: 47  MKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTADLMKALSEIDFDDEIRALIVLASL 106

Query: 61  -----------------EKTTSDLLKALTNIESTRKRETRDSSGN--ALSVDRRERSKSK 120
                            EK   + ++ L   E  R+R+  ++SG+  AL+++ R R  ++
Sbjct: 107 PNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNR 166

Query: 121 SSNK---HGGSKSKNREKAPNRPNVTCWNCGEKGHFRKGCTRPKKKQNHKSEDDNDSINS 180
           +SN+   +  + ++NR K+ +   V CWNCG+ GHF++ C  PKKK      +++DS N+
Sbjct: 167 NSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTGHFKRQCKSPKKK------NEDDSANA 226

Query: 181 A-EDIGDALIHSVDSLIESWILDSDASFHSSPNKELFWNFKSGNLEKVYLADNKDLEIKE 240
             E++ DAL+ +VDS ++ W+LDS ASFH++P++E+  N+ +G+  KVYLAD   L++  
Sbjct: 227 VTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVG 286

Query: 241 KGDVCIKTPAGNQRTLKNVRYIPGLKKNLISIGQLDSTGYATKLGKSSWKIMKGATVVAR 300
            GDV I  P G+   L+ VR+IP L++NLIS+GQLD  G+A      +WK+ KGA V+AR
Sbjct: 287 LGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLAR 346

Query: 301 GSKSGTLYTTTGCMNIAVVTESASNSSLWHNRLGHMSVKGMKTMAAKGVLEGLKSVDVGR 337
           G K+GTLY T+   +   V ++++++SLWH RLGHMS KGMK + +KG L  LKS+D   
Sbjct: 347 GKKTGTLYMTSCPRDTIAVADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDM 406

[Close]

BLAST of CmoCh19G004270.1 vs. NCBI nr
Match: gi|147825453|emb|CAN73240.1| (hypothetical protein VITISV_035336 [Vitis vinifera])

HSP 1 Score: 238.4 bits (607), Expect = 2.9e-59
Identity = 134/312 (42.95%), Postives = 205/312 (65.71%), Query Frame = 1


Query: 31  KEKTTSDLLKALTNIESTRKRETRDSSGN--ALSVDRRERSKSKSSNK---HGGSKSKNR 90
           KEK   + ++ L   E  R+R+  ++SG+  AL+++ R R  +K+SN+   +  + ++NR
Sbjct: 169 KEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLEXRGRGNNKNSNQGRSNSRNSNRNR 228

Query: 91  EKAPNRPNVTCWNCGEKGHFRKGCTRPKKKQNHKSEDDNDSINSA-EDIGDALIHSVDSL 150
            K+ +   V CWNCG+ GHF++ C  PKKK      +++DS N+  E++ DAL+ +VDS 
Sbjct: 229 SKSRSXQQVQCWNCGKTGHFKRQCKSPKKK------NEDDSANAVTEEVQDALLLAVDSP 288

Query: 151 IESWILDSDASFHSSPNKELFWNFKSGNLEKVYLADNKDLEIKEKGDVCIKTPAGNQRTL 210
           ++ W+LDS ASFH++P +E+  N+ +G+  KVYLAD   L++   GDV I  P G+   L
Sbjct: 289 LDDWVLDSGASFHTTPXREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSXWLL 348

Query: 211 KNVRYIPGLKKNLISIGQLDSTGYATKLGKSSWKIMKGATVVARGSKSGTLYTTTGCMNI 270
           + VR+IP L++NLIS+GQLD  G+A      +WK+ KGA V+ARG K+GTLY T+   + 
Sbjct: 349 EKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLYMTSCPRDT 408

Query: 271 AVVTESASNSSLWHNRLGHMSVKGMKTMAAKGVLEGLKSVDVGRCENYVMGKQKLVSFTR 330
             V ++++++SLWH RLGHMS KGMK + +KG L  LKS+D   CE+ ++GKQK VSF +
Sbjct: 409 IAVADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFLK 468

Query: 331 TAKELKKVWLEM 337
           T +  K   LE+
Sbjct: 469 TGRTPKAEKLEL 474

[Close]

BLAST of CmoCh19G004270.1 vs. NCBI nr
Match: gi|147788024|emb|CAN69340.1| (hypothetical protein VITISV_032634 [Vitis vinifera])

HSP 1 Score: 238.4 bits (607), Expect = 2.9e-59
Identity = 136/313 (43.45%), Postives = 205/313 (65.50%), Query Frame = 1


Query: 31  KEKTTSDLLKALTNIESTRKRETRDSSGN--ALSVDRRERSKSKSSNKHGGSKSKN---- 90
           KEK   + ++ L   E  R+R+  ++SG+  AL+++ R R  +++SN HG S S+N    
Sbjct: 169 KEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNLETRGRGNNRNSN-HGRSNSRNSNRN 228

Query: 91  REKAPNRPNVTCWNCGEKGHFRKGCTRPKKKQNHKSEDDNDSINSA-EDIGDALIHSVDS 150
           R K+ +   V CWNCG+ GHF++ C  PKKK      +++DS N+  E++ DAL+ +VDS
Sbjct: 229 RSKSRSGQQVQCWNCGKTGHFKRQCKSPKKK------NEDDSANAVTEEVXDALLLAVDS 288

Query: 151 LIESWILDSDASFHSSPNKELFWNFKSGNLEKVYLADNKDLEIKEKGDVCIKTPAGNQRT 210
            ++ W+LDS ASFH++P++E+  N+ +G+  KVYLAD   L++   GDV I  P G+   
Sbjct: 289 PLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWL 348

Query: 211 LKNVRYIPGLKKNLISIGQLDSTGYATKLGKSSWKIMKGATVVARGSKSGTLYTTTGCMN 270
           L+ VR+IP L++NLIS+GQLD  G+A      +WK+ KG  V+ARG K+GTLY T+   +
Sbjct: 349 LEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGVRVLARGKKTGTLYMTSCPRD 408

Query: 271 IAVVTESASNSSLWHNRLGHMSVKGMKTMAAKGVLEGLKSVDVGRCENYVMGKQKLVSFT 330
              V ++++++SLWH RLGHMS KGMK + +KG L  LKS+D   CE+ ++GKQK VSF 
Sbjct: 409 TIAVADASTDTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFDMCESCILGKQKKVSFL 468

Query: 331 RTAKELKKVWLEM 337
           +T +  K   LE+
Sbjct: 469 KTGRTPKAEKLEL 474

The following BLAST results are available for this feature:

BLAST of CmoCh19G004270.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	6.3e-38	34.34	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
M300_ARATH	2.8e-06	30.34	Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CmoCh19G004270.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151TNK0_CAJCA	3.0e-71	48.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151QVU7_CAJCA	8.7e-71	49.21	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A5BPB3_VITVI	6.1e-64	39.18	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034935 PE=4 SV=1	[more]
K4BJ49_SOLLC	9.1e-60	51.76	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A5B0E4_VITVI	2.0e-59	41.69	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022906 PE=4 SV=1	[more]

BLAST of CmoCh19G004270.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00300.1	1.6e-07	30.34	ATMG00300.1 Gag-Pol-related retrotransposon family protein	[more]
AT3G21000.1	8.8e-06	26.72	Gag-Pol-related retrotransposon family protein	[more]

BLAST of CmoCh19G004270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012357422\|gb\|KYP68607.1\|	4.3e-71	48.91	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|1012322120\|gb\|KYP34487.1\|	1.3e-70	49.21	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|147798867\|emb\|CAN65867.1\|	8.7e-64	39.18	hypothetical protein VITISV_034935 [Vitis vinifera]	[more]
gi\|147825453\|emb\|CAN73240.1\|	2.9e-59	42.95	hypothetical protein VITISV_035336 [Vitis vinifera]	[more]
gi\|147788024\|emb\|CAN69340.1\|	2.9e-59	43.45	hypothetical protein VITISV_032634 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001878	Znf_CCHC
IPR025724	GAG-pre-integrase_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh19G004270	CmoCh19G004270	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh19G004270.1	CmoCh19G004270.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G004270.1.exon.7	CmoCh19G004270.1.exon.7	exon
CmoCh19G004270.1.exon.6	CmoCh19G004270.1.exon.6	exon
CmoCh19G004270.1.exon.5	CmoCh19G004270.1.exon.5	exon
CmoCh19G004270.1.exon.4	CmoCh19G004270.1.exon.4	exon
CmoCh19G004270.1.exon.3	CmoCh19G004270.1.exon.3	exon
CmoCh19G004270.1.exon.2	CmoCh19G004270.1.exon.2	exon
CmoCh19G004270.1.exon.1	CmoCh19G004270.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh19G004270.1.CDS.1	CmoCh19G004270.1.CDS.1	CDS
CmoCh19G004270.1.CDS.2	CmoCh19G004270.1.CDS.2	CDS
CmoCh19G004270.1.CDS.3	CmoCh19G004270.1.CDS.3	CDS
CmoCh19G004270.1.CDS.4	CmoCh19G004270.1.CDS.4	CDS
CmoCh19G004270.1.CDS.5	CmoCh19G004270.1.CDS.5	CDS
CmoCh19G004270.1.CDS.6	CmoCh19G004270.1.CDS.6	CDS
CmoCh19G004270.1.CDS.7	CmoCh19G004270.1.CDS.7	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	GENE3D	G3DSA:4.10.60.10		coord: 88..115 score: 3.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 95..111 score: 0.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 96..111 score:
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 77..118 score: 8.3
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 267..317 score: 1.5
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 65..336 score: 8.1E-59coord: 1..12 score: 8.1
None	No IPR available	PANTHER	PTHR11439:SF127	SUBFAMILY NOT NAMED	coord: 65..336 score: 8.1E-59coord: 1..12 score: 8.1