CmoCh19G003060.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh19G003060.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Phosphatidylserine decarboxylase, putative) (4.1.1.65)
LocationCmo_Chr19 : 2264103 .. 2264764 (-)
Sequence length592
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAATAAAAAGCCGAAAGTATTAAAAGTCAAAAAAAAGAGAAAAAAAAGTAATTAAAAAAAGATTGGAGGCTTTTAAGAAATAGCCGCCAGCAGGGGAAGAACAATACAGCAGAAAAGCAGACCAAAAAGTTGAACGGACTGACATTCTTCCAATTTTCAGCTTGGAAGTATTCAAATCAAAGACCCCACGATCCCCCACAACGTCGATTTCTCATGGCTTAAGAGTGATTCTCCGAATCAAATTCCCTCCATTTCCAGACGCAGCAGCAGGAGCAGAGCCAATCATGGGGAATGGCAGTTCCAAGCTTGATTCTTCCTCCTCTTCAGATCCCGATGCTGAAGACTCGCGTGGTTCTCGATTCAAGAAGCGTATGCATCTTCGTCGATTTCTTCGAAGGCGTCGTGGAGGAGACGCCAATGGCAAAGGAATTCGTTCTCATACCAAACTTGGCTCTGTGGAGGATTTCGCTGGAATCGCTGTTCTTACTCTTATTAGTGTAATGCTCTGGCTGTTTTGTTATCTAAGCTTTCGTTTGTTGCGCTTTGATATTGTTTGCTTGTTTGTAGGCGCAAATGAATTTCAAGGATAAGTGGCTCGCTTGTGTTTCGTTTGGAGAGCAGACTTTTCGGACGGGAATCTCTGATCAGTTAAGTTCTTGA

mRNA sequence

AAAAATAAAAAGCCGAAAGTATTAAAAGTCAAAAAAAAGAGAAAAAAAAGTAATTAAAAAAAGATTGGAGGCTTTTAAGAAATAGCCGCCAGCAGGGGAAGAACAATACAGCAGAAAAGCAGACCAAAAAGTTGAACGGACTGACATTCTTCCAATTTTCAGCTTGGAAGTATTCAAATCAAAGACCCCACGATCCCCCACAACGTCGATTTCTCATGGCTTAAGAGTGATTCTCCGAATCAAATTCCCTCCATTTCCAGACGCAGCAGCAGGAGCAGAGCCAATCATGGGGAATGGCAGTTCCAAGCTTGATTCTTCCTCCTCTTCAGATCCCGATGCTGAAGACTCGCGTGGTTCTCGATTCAAGAAGCGTATGCATCTTCGTCGATTTCTTCGAAGGCGTCGTGGAGGAGACGCCAATGGCAAAGGAATTCGTTCTCATACCAAACTTGGCTCTGTGGAGGATTTCGCTGGAATCGCTGTTCTTACTCTTATTAGTGCGCAAATGAATTTCAAGGATAAGTGGCTCGCTTGTGTTTCGTTTGGAGAGCAGACTTTTCGGACGGGAATCTCTGATCAGTTAAGTTCTTGA

Coding sequence (CDS)

ATGGGGAATGGCAGTTCCAAGCTTGATTCTTCCTCCTCTTCAGATCCCGATGCTGAAGACTCGCGTGGTTCTCGATTCAAGAAGCGTATGCATCTTCGTCGATTTCTTCGAAGGCGTCGTGGAGGAGACGCCAATGGCAAAGGAATTCGTTCTCATACCAAACTTGGCTCTGTGGAGGATTTCGCTGGAATCGCTGTTCTTACTCTTATTAGTGCGCAAATGAATTTCAAGGATAAGTGGCTCGCTTGTGTTTCGTTTGGAGAGCAGACTTTTCGGACGGGAATCTCTGATCAGTTAAGTTCTTGA
Homology
[Close]
BLAST of CmoCh19G003060.1 vs. Swiss-Prot
Match: PSD2_ARATH (Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.3e-15
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 1 

Query: 1  MGNGSSKLDSSSSSDPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKLGSVED 60
          MGNG+S+         +A++SR SR + ++   R  RR      N  G+     + S ED
Sbjct: 1  MGNGNSR---------EAKESRRSRLRHKLQKFRIHRRHLRSSRNSAGMVIQRTV-SAED 60

Query: 61 FAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISD 98
          F+GIA+LTLI A+M FKDKWLACVSFGEQTFRT ISD
Sbjct: 61 FSGIALLTLIGAEMKFKDKWLACVSFGEQTFRTEISD 87

[Close]
BLAST of CmoCh19G003060.1 vs. Swiss-Prot
Match: PSD3_ARATH (Phosphatidylserine decarboxylase proenzyme 3 OS=Arabidopsis thaliana GN=PSD3 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.4e-14
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1 

Query: 1  MGNGSSKLDSSSSSDPDAEDSRGSRFKKRMHLRRFLRR-RRGGDANGKGIRSHTKLGSVE 60
          MGNG+S          + ++SR S+ +K++   R  RR  R G  +  G+ S   + S +
Sbjct: 1  MGNGNST---------ETKESRRSKMRKKIQNFRSRRRLSRPGSGSVSGLASQRSV-SAD 60

Query: 61 DFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISD 98
          DFAGIA+LTLI A+M FKDKWLACVSFGEQTFR+ ISD
Sbjct: 61 DFAGIALLTLIGAEMKFKDKWLACVSFGEQTFRSEISD 88

[Close]
BLAST of CmoCh19G003060.1 vs. TrEMBL
Match: A0A0A0K2G8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G058530 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.8e-31
Identity = 78/101 (77.23%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 1   MGNGSSKLDSSS----SSDPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKLG 60
           MGNG+SK DSSS    SSDPDAE+SR SRFK R+HLRRFLRRRR    NG+  RSHTKLG
Sbjct: 1   MGNGTSKPDSSSYSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKV-TNGRAFRSHTKLG 60

Query: 61  SVEDFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISD 98
           S EDFAGIA+LTLI A+M+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  SAEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 100

[Close]
BLAST of CmoCh19G003060.1 vs. TrEMBL
Match: A0A0D2PM37_GOSRA (Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium raimondii GN=PSD2 PE=3 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.3e-20
Identity = 65/99 (65.66%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 1  MGNGSSKLD-SSSSSDPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKLGSVE 60
          MG+GSSK D SSSSSD DA+ SR SR K+R+   R LRRRRG D+      SH KL + E
Sbjct: 1  MGHGSSKEDGSSSSSDEDAKPSRISRVKQRLRRHR-LRRRRGSDS------SHKKLFAAE 60

Query: 61 DFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISDQ 99
          DFAGIA LTLI+A+M FKDKWLACVSFGEQTFRT +S++
Sbjct: 61 DFAGIAHLTLINAEMKFKDKWLACVSFGEQTFRTNVSNE 92

[Close]
BLAST of CmoCh19G003060.1 vs. TrEMBL
Match: A0A061E1F1_THECC (Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 1 

Query: 1  MGNGSSKLD---SSSSSDPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKLGS 60
          MG+GSSK D   SSSSSD D + SR SR K+R+ L R    R  G +      S  KL +
Sbjct: 1  MGHGSSKEDDSSSSSSSDADTKPSRISRLKQRLRLHRHRHHRTRGSS------SQQKLNA 60

Query: 61 VEDFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISDQ 99
           EDFAGIA+LTLI+A+M FKDKWLACVSFGEQTFRT ISDQ
Sbjct: 61 AEDFAGIALLTLINAEMKFKDKWLACVSFGEQTFRTNISDQ 95

[Close]
BLAST of CmoCh19G003060.1 vs. TrEMBL
Match: A0A061E2K3_THECC (Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-19
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 1 

Query: 1  MGNGSSKLD---SSSSSDPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKLGS 60
          MG+GSSK D   SSSSSD D + SR SR K+R+ L R    R  G +      S  KL +
Sbjct: 1  MGHGSSKEDDSSSSSSSDADTKPSRISRLKQRLRLHRHRHHRTRGSS------SQQKLNA 60

Query: 61 VEDFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISDQ 99
           EDFAGIA+LTLI+A+M FKDKWLACVSFGEQTFRT ISDQ
Sbjct: 61 AEDFAGIALLTLINAEMKFKDKWLACVSFGEQTFRTNISDQ 95

[Close]
BLAST of CmoCh19G003060.1 vs. TrEMBL
Match: A0A0B0MD54_GOSAR (Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium arboreum GN=PSD2 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-19
Identity = 64/99 (64.65%), Postives = 73/99 (73.74%), Query Frame = 1 

Query: 1  MGNGSSKLD-SSSSSDPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKLGSVE 60
          MG+GSSK D SSSSSD DA+ SR SR K R+   R LRRRR  D+      SH KL + E
Sbjct: 1  MGHGSSKEDGSSSSSDEDAKPSRISRVKHRLRRHR-LRRRRRSDS------SHKKLFAAE 60

Query: 61 DFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISDQ 99
          DFAGIA LTLI+A+M FKDKWLACVSFGEQTFRT +S +
Sbjct: 61 DFAGIAHLTLINAEMKFKDKWLACVSFGEQTFRTNVSTE 92

[Close]
BLAST of CmoCh19G003060.1 vs. TAIR10
Match: AT5G57190.1 (AT5G57190.1 phosphatidylserine decarboxylase 2)

HSP 1 Score: 81.6 bits (200), Expect = 3.0e-16
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 1 

Query: 1  MGNGSSKLDSSSSSDPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKLGSVED 60
          MGNG+S+         +A++SR SR + ++   R  RR      N  G+     + S ED
Sbjct: 1  MGNGNSR---------EAKESRRSRLRHKLQKFRIHRRHLRSSRNSAGMVIQRTV-SAED 60

Query: 61 FAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISD 98
          F+GIA+LTLI A+M FKDKWLACVSFGEQTFRT ISD
Sbjct: 61 FSGIALLTLIGAEMKFKDKWLACVSFGEQTFRTEISD 87

[Close]
BLAST of CmoCh19G003060.1 vs. TAIR10
Match: AT4G25970.1 (AT4G25970.1 phosphatidylserine decarboxylase 3)

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-15
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1 

Query: 1  MGNGSSKLDSSSSSDPDAEDSRGSRFKKRMHLRRFLRR-RRGGDANGKGIRSHTKLGSVE 60
          MGNG+S          + ++SR S+ +K++   R  RR  R G  +  G+ S   + S +
Sbjct: 1  MGNGNST---------ETKESRRSKMRKKIQNFRSRRRLSRPGSGSVSGLASQRSV-SAD 60

Query: 61 DFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISD 98
          DFAGIA+LTLI A+M FKDKWLACVSFGEQTFR+ ISD
Sbjct: 61 DFAGIALLTLIGAEMKFKDKWLACVSFGEQTFRSEISD 88

[Close]
BLAST of CmoCh19G003060.1 vs. NCBI nr
Match: gi|659110477|ref|XP_008455245.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis melo])

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-32
Identity = 80/102 (78.43%), Postives = 88/102 (86.27%), Query Frame = 1 

Query: 1   MGNGSSKLDSSSSS-----DPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKL 60
           MGNG+SKLDSSSSS     DPDAE+SR SRFK R+HLRRFLRRRR    NG+G RSHTKL
Sbjct: 1   MGNGTSKLDSSSSSSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKV-TNGRGFRSHTKL 60

Query: 61  GSVEDFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISD 98
           GS EDFAGIA+LTLI A+M+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  GSAEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 101

[Close]
BLAST of CmoCh19G003060.1 vs. NCBI nr
Match: gi|778724254|ref|XP_011658767.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 2 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 6.8e-31
Identity = 78/101 (77.23%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 1   MGNGSSKLDSSS----SSDPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKLG 60
           MGNG+SK DSSS    SSDPDAE+SR SRFK R+HLRRFLRRRR    NG+  RSHTKLG
Sbjct: 1   MGNGTSKPDSSSYSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKV-TNGRAFRSHTKLG 60

Query: 61  SVEDFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISD 98
           S EDFAGIA+LTLI A+M+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  SAEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 100

[Close]
BLAST of CmoCh19G003060.1 vs. NCBI nr
Match: gi|700188445|gb|KGN43678.1| (hypothetical protein Csa_7G058530 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 6.8e-31
Identity = 78/101 (77.23%), Postives = 86/101 (85.15%), Query Frame = 1 

Query: 1   MGNGSSKLDSSS----SSDPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKLG 60
           MGNG+SK DSSS    SSDPDAE+SR SRFK R+HLRRFLRRRR    NG+  RSHTKLG
Sbjct: 1   MGNGTSKPDSSSYSSSSSDPDAEESRISRFKNRVHLRRFLRRRRKV-TNGRAFRSHTKLG 60

Query: 61  SVEDFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISD 98
           S EDFAGIA+LTLI A+M+FKD+WLACVSFGEQTFRTGISD
Sbjct: 61  SAEDFAGIAILTLIRARMDFKDRWLACVSFGEQTFRTGISD 100

[Close]
BLAST of CmoCh19G003060.1 vs. NCBI nr
Match: gi|823203030|ref|XP_012436009.1| (PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Gossypium raimondii])

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-20
Identity = 65/99 (65.66%), Postives = 76/99 (76.77%), Query Frame = 1 

Query: 1  MGNGSSKLD-SSSSSDPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKLGSVE 60
          MG+GSSK D SSSSSD DA+ SR SR K+R+   R LRRRRG D+      SH KL + E
Sbjct: 1  MGHGSSKEDGSSSSSDEDAKPSRISRVKQRLRRHR-LRRRRGSDS------SHKKLFAAE 60

Query: 61 DFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISDQ 99
          DFAGIA LTLI+A+M FKDKWLACVSFGEQTFRT +S++
Sbjct: 61 DFAGIAHLTLINAEMKFKDKWLACVSFGEQTFRTNVSNE 92

[Close]
BLAST of CmoCh19G003060.1 vs. NCBI nr
Match: gi|590688749|ref|XP_007043036.1| (Phosphatidylserine decarboxylase 2 isoform 1 [Theobroma cacao])

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-19
Identity = 62/101 (61.39%), Postives = 71/101 (70.30%), Query Frame = 1 

Query: 1  MGNGSSKLD---SSSSSDPDAEDSRGSRFKKRMHLRRFLRRRRGGDANGKGIRSHTKLGS 60
          MG+GSSK D   SSSSSD D + SR SR K+R+ L R    R  G +      S  KL +
Sbjct: 1  MGHGSSKEDDSSSSSSSDADTKPSRISRLKQRLRLHRHRHHRTRGSS------SQQKLNA 60

Query: 61 VEDFAGIAVLTLISAQMNFKDKWLACVSFGEQTFRTGISDQ 99
           EDFAGIA+LTLI+A+M FKDKWLACVSFGEQTFRT ISDQ
Sbjct: 61 AEDFAGIALLTLINAEMKFKDKWLACVSFGEQTFRTNISDQ 95

The following BLAST results are available for this feature:
BLAST of CmoCh19G003060.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSD2_ARATH5.3e-1550.52Phosphatidylserine decarboxylase proenzyme 2 OS=Arabidopsis thaliana GN=PSD2 PE=... [more]
PSD3_ARATH3.4e-1450.00Phosphatidylserine decarboxylase proenzyme 3 OS=Arabidopsis thaliana GN=PSD3 PE=... [more]
BLAST of CmoCh19G003060.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K2G8_CUCSA4.8e-3177.23Uncharacterized protein OS=Cucumis sativus GN=Csa_7G058530 PE=4 SV=1[more]
A0A0D2PM37_GOSRA1.3e-2065.66Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium raimondii GN=PSD2 PE=3... [more]
A0A061E1F1_THECC1.4e-1961.39Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=... [more]
A0A061E2K3_THECC1.4e-1961.39Phosphatidylserine decarboxylase proenzyme 2 OS=Theobroma cacao GN=PSD2 PE=3 SV=... [more]
A0A0B0MD54_GOSAR3.2e-1964.65Phosphatidylserine decarboxylase proenzyme 2 OS=Gossypium arboreum GN=PSD2 PE=3 ... [more]
BLAST of CmoCh19G003060.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G57190.13.0e-1650.52 phosphatidylserine decarboxylase 2[more]
AT4G25970.11.9e-1550.00 phosphatidylserine decarboxylase 3[more]
BLAST of CmoCh19G003060.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110477|ref|XP_008455245.1|2.8e-3278.43PREDICTED: phosphatidylserine decarboxylase proenzyme 3-like [Cucumis melo][more]
gi|778724254|ref|XP_011658767.1|6.8e-3177.23PREDICTED: phosphatidylserine decarboxylase proenzyme 2 [Cucumis sativus][more]
gi|700188445|gb|KGN43678.1|6.8e-3177.23hypothetical protein Csa_7G058530 [Cucumis sativus][more]
gi|823203030|ref|XP_012436009.1|1.9e-2065.66PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Gossypium raimondi... [more]
gi|590688749|ref|XP_007043036.1|2.1e-1961.39Phosphatidylserine decarboxylase 2 isoform 1 [Theobroma cacao][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046486 glycerolipid metabolic process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0008654 phospholipid biosynthetic process
biological_process GO:0006566 threonine metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0004609 phosphatidylserine decarboxylase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh19G003060CmoCh19G003060gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh19G003060.1CmoCh19G003060.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G003060.1.CDS.2CmoCh19G003060.1.CDS.2CDS
CmoCh19G003060.1.CDS.1CmoCh19G003060.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G003060.1.five_prime_UTR.1CmoCh19G003060.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh19G003060.1.exon.2CmoCh19G003060.1.exon.2exon
CmoCh19G003060.1.exon.1CmoCh19G003060.1.exon.1exon