CmoCh17G013030.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCGTGGGGGAGGGGTAAATCTCCTGGCTGGGCAGCGGTTAACCTTAAGCAACAGAATAGTGGCCTTCAAGATGAAATTGACCCGGACCCATTCCCACCAATGTCTACTGCTCTTTCCTTTCTGCCACCCCGTGAAAACGTACACAGAGTTAATGGTCGTTCAGGGAGATCTTTCTCGTCGACACCCCTTCCTTCTGCCGATTCTTTAATGTCGCCAGAAAATTTTGGTACAAAAAAGACCATACCTGGTAATTCTAGCATTCGAAGTGGCAAGAAGTTGGTTGAAGAATCCACTGATGTTTTAGCCTTCTGGAAGCTTAAAGAGCTTCATTCTTGGGCTGATATTAGCTTGATTGTGGATATAATGGAAGCTGTAAATAATAACTTCAACGAGGCGTCTAAGTTATTAAAAACAATGGTTTCTAGTGACAATTTTGAGATCAATAATGAGATGAGCACCTTAGGACTGCATTCCTCTAATGATGTATCATTGGTGAGGGGTAAATCTCCTGGCTGGGAAGAATTTAACCTTAAGCAACAAAATAGAGGCCTTCAAGATAGAATTGATCCGAAACCATTCCCACCGATGCCAAGTGCCCTCTCCTCTTTGCCACCCCGTGAAAACTTGCACGGAGTTAATGGCCGTCCAGGGAGATCCTCCTCATCTTCACCTCTTCCTTCTGCTGATTCTCTAACTTTGCCAGAAAATTACAGTGCAAAGAAAATACTTGGTGATTCTAGCATTCAAAATGGAAGGAAGGTGGTTGAAGAAACCACTGACGTTTTAGCCTTTTGGAAGCTTAAGGAGCTTCATACTTGGGCTGATTTTAGCTTGATTGTGGATATAATGGAAGCTGTAGATAATAACTTCAATGAGGCATCTACTTATTTAAACAAAATGGTTTCTAGTGACAATGTTGAGATCTGTAACGAGATGAGCACCTTAGGACTGCATTCTGCTGATGGTCTACCGTGCAATGGGAAGAATGATGTAACTATATCATTAGGAAGAACTGTTAATAATCCCATCCCTAGTTCCACACTAAAGGATGTGCAAGACATGCATCAAAATATTAATGATAAATTGTTTGAAAATAATTATCATGAAAGAAATTTCTTTCATAATGTTGGAAATCCAAAAATAGCTCTTTATTGCTCAAAGTCTGCTCCTATTGAGCCCGAGTGGGAAGAAGATGATATTTACCTGAGCCATCGGAAAGATGCTATAGCAATGATGAGGTAAATAAGTCTTCTGTCGACTTTATTATCGGGTTGTTTTTCTACTTCAATTTAATTTGTTTCCCTTAATAAATATATTTTTTTAAAATTTCCATAACAAAAACTTCTTTTTTTTTTTCCTGCTTTTATCATTGTGATGCACCACTAGGATTCTCGGGTCCTTTGTATTTATTATATATTTTTACCGTGTGTGAGAAGAACGTTTTAAAGAATTTATATGTATGGGGGATCTCTTCTATAGGTTGTACCTTGAGTTATGAGTAGACAACAGTCTGTTTGTATGAATAAGCTAATTTATGTTGATAGCTCAAGCTTTGGGGATTAGTAGAAAGTCGACGTGTTAAGAGGGAGTTATTGAATCCAAGTTCATGGTAATTTTTTTTTTAACTCAAATTGACACTGTAATCATACTCAAAAAGAAATGTTAAAAAATAATTGTTGGACAATTATTCTTGACCTAGGCGCTCTAGTATTGTGGCTTTGGTTTTTATGTTGTAGTGTAAAATATATGGGTCTTGGGAGAAGGTTCAAGTACTCAATGCTATAGGAGTTGATGTCTTGCTTAATATGATCCGATGTTATTTGTAATTTTCTTTAATCAATAGGTCTGCATCTCAACATTCAAGGGCAGCCACTAATGCCTATCTTCGGAAGGATCATGCTTCAGCCAAGTATCATTCATCGAGGGCTCAAGAACAATGGCTAGCTGCAAAAATGTTAAATGCTAAGGCAGCCAATGAAATTTTACAAACAAGGAATAGTGAAAATGGGCTCTGGAAGTTGGACTTACATGGGCTTCATGCAGCAGAGGCTGTTCAAGCCTTGCAAGATCACTTGCTGAAAATCGAAACTCGGAATGCCTCCAATCGGTCGTTGTCGCCAAAGAAAGCTGAAAGGAAGGGTTTCCATCGTGTTTCATCCCTTGAGTATCTTAGTTGTATGGGCGTAAAGTTGGACAAAGAATTACAATCACCATTACCTAGGCATAGGCCGACATCATTGGAAGTCATAACAGGTAAATTTGTACCTGTTGCTGTTTAACTCAACATTTGTGTTTTGTTAAAGTTTGGTTGTCTATATTTTTTGTTTTGACGTTTTTGTTCATTCTTTTCACATTTATTTTTCTTGAGAATGGAATGATTGTATGACAGTGTAACTGATAACTTTAGAGGTTGACTACGCTTTTGTTGGCTTTAGCCTTTATCAATTCCAGAGAGAGATTGGTATTTTCTACATTATTCAGTTCATCAAGATTTGTTCTTGGATTGATACTTCACTATTGATAGGCTGTATGAATTGTGAGGAAAAGTTTAGGAGTCCAGAAATTTTCGAGAGAGGGGAATGAAGCATTCCTTATAAGGGTGTAAAACCTCTCCCTAGTGGACACGTTTTAAAACCTTGAAGGGAAAGCCTAAAGAGGACAATATCTACTAGCGGGTGGGCTTGGGCTGTCACAAATGGTATCAGAGCCCGACATCAGACGGTATGCCAGCGAGGATGTTGGACTCCCAAGGGGGGTGGATTGTGAGGTCCCACATCGGTTGGAGAGGAGAACAAAGCATTCCTCGTAAGGGTGTGGAAACCTCTCCTTAAAACCTTGAGGGGAATCTCAAAAGGGGAAGTACAAAGAGGACTATGAGCTTGTTTCTTTGCATTTATTGCATGCGAGAGTCATTCAAGTAGCCTTAATCAAAGTATCTTGTAAAGTGATTCGAATCACGAGTTCAGAAACGAGTTTTCTTTACTCTTGATCTTGATCATCAAGGTAAGTCATTCTAAAACTTTCCCCTAGGTTGATTCTTTATCATTTTTGGAGTTTTTAGATAATTTAGATCTAAAGATCTTGTTCTTCAGCAAGGTCGTTAGATCAAATCTCAAGAGTTTCATAACTCCTAGTGCATCTTACCCATGCATGTACCTGGAGGAAGGTGCTTGGGGGAAGTAATGGCAATTAGTTAGCTGGGGATGGATGGGTGGATACACGTTTCGTGACTGTGGGTCCCTTTTTGTAATGAAGGACAAAATAGAAATCTGTTTAGCTAAGGCCGGGAGGCTATATATATATTAGATATAACAATGAGTTTCATCATAGGTTGATTTGACTGAAGGGAAGGATTTAAATGTCGGTGACGCTAGCATATTTTTTTCGTAAAATAACGAATTCTCGTGTGCACTACTGATTGAAACATTGACGATTGTACTTATGATGTTTTGTTCATTCCCAAAGGAGTAGGCAAACATAGCAGGGGGGAAGCTGCGCTACCAAAGGCCGTGACAAGTTTTCTTAGTGAAAATGGGTGAGTCTACTTTTCTTTCCATTTTGACTTTAACCAAAAAGAAGGGTAAAAATGTTTATAGATTCATTCTACTTCAACCACTTGATAATTTGCAGGTACCGTTTTGAACAGTTGAGGCCTGGGACGATCAGCGTTCGCCCAAAGTTTCGTAGGTAA ATGTCGTGGGGGAGGGGTAAATCTCCTGGCTGGGCAGCGGTTAACCTTAAGCAACAGAATAGTGGCCTTCAAGATGAAATTGACCCGGACCCATTCCCACCAATGTCTACTGCTCTTTCCTTTCTGCCACCCCGTGAAAACGTACACAGAGTTAATGGTCGTTCAGGGAGATCTTTCTCGTCGACACCCCTTCCTTCTGCCGATTCTTTAATGTCGCCAGAAAATTTTGGTACAAAAAAGACCATACCTGGTAATTCTAGCATTCGAAGTGGCAAGAAGTTGGTTGAAGAATCCACTGATGTTTTAGCCTTCTGGAAGCTTAAAGAGCTTCATTCTTGGGCTGATATTAGCTTGATTGTGGATATAATGGAAGCTGTAAATAATAACTTCAACGAGGCGTCTAAGTTATTAAAAACAATGGTTTCTAGTGACAATTTTGAGATCAATAATGAGATGAGCACCTTAGGACTGCATTCCTCTAATGATGTATCATTGGTGAGGGGTAAATCTCCTGGCTGGGAAGAATTTAACCTTAAGCAACAAAATAGAGGCCTTCAAGATAGAATTGATCCGAAACCATTCCCACCGATGCCAAGTGCCCTCTCCTCTTTGCCACCCCGTGAAAACTTGCACGGAGTTAATGGCCGTCCAGGGAGATCCTCCTCATCTTCACCTCTTCCTTCTGCTGATTCTCTAACTTTGCCAGAAAATTACAGTGCAAAGAAAATACTTGGTGATTCTAGCATTCAAAATGGAAGGAAGGTGGTTGAAGAAACCACTGACGTTTTAGCCTTTTGGAAGCTTAAGGAGCTTCATACTTGGGCTGATTTTAGCTTGATTGTGGATATAATGGAAGCTGTAGATAATAACTTCAATGAGGCATCTACTTATTTAAACAAAATGGTTTCTAGTGACAATGTTGAGATCTGTAACGAGATGAGCACCTTAGGACTGCATTCTGCTGATGGTCTACCGTGCAATGGGAAGAATGATGTAACTATATCATTAGGAAGAACTGTTAATAATCCCATCCCTAGTTCCACACTAAAGGATGTGCAAGACATGCATCAAAATATTAATGATAAATTGTTTGAAAATAATTATCATGAAAGAAATTTCTTTCATAATGTTGGAAATCCAAAAATAGCTCTTTATTGCTCAAAGTCTGCTCCTATTGAGCCCGAGTGGGAAGAAGATGATATTTACCTGAGCCATCGGAAAGATGCTATAGCAATGATGAGGTCTGCATCTCAACATTCAAGGGCAGCCACTAATGCCTATCTTCGGAAGGATCATGCTTCAGCCAAGTATCATTCATCGAGGGCTCAAGAACAATGGCTAGCTGCAAAAATGTTAAATGCTAAGGCAGCCAATGAAATTTTACAAACAAGGAATAGTGAAAATGGGCTCTGGAAGTTGGACTTACATGGGCTTCATGCAGCAGAGGCTGTTCAAGCCTTGCAAGATCACTTGCTGAAAATCGAAACTCGGAATGCCTCCAATCGGTCGTTGTCGCCAAAGAAAGCTGAAAGGAAGGGTTTCCATCGTGTTTCATCCCTTGAGTATCTTAGTTGTATGGGCGTAAAGTTGGACAAAGAATTACAATCACCATTACCTAGGCATAGGCCGACATCATTGGAAGTCATAACAGGAGTAGGCAAACATAGCAGGGGGGAAGCTGCGCTACCAAAGGCCGTGACAAGTTTTCTTAGTGAAAATGGGTACCGTTTTGAACAGTTGAGGCCTGGGACGATCAGCGTTCGCCCAAAGTTTCGTAGGTAA ATGTCGTGGGGGAGGGGTAAATCTCCTGGCTGGGCAGCGGTTAACCTTAAGCAACAGAATAGTGGCCTTCAAGATGAAATTGACCCGGACCCATTCCCACCAATGTCTACTGCTCTTTCCTTTCTGCCACCCCGTGAAAACGTACACAGAGTTAATGGTCGTTCAGGGAGATCTTTCTCGTCGACACCCCTTCCTTCTGCCGATTCTTTAATGTCGCCAGAAAATTTTGGTACAAAAAAGACCATACCTGGTAATTCTAGCATTCGAAGTGGCAAGAAGTTGGTTGAAGAATCCACTGATGTTTTAGCCTTCTGGAAGCTTAAAGAGCTTCATTCTTGGGCTGATATTAGCTTGATTGTGGATATAATGGAAGCTGTAAATAATAACTTCAACGAGGCGTCTAAGTTATTAAAAACAATGGTTTCTAGTGACAATTTTGAGATCAATAATGAGATGAGCACCTTAGGACTGCATTCCTCTAATGATGTATCATTGGTGAGGGGTAAATCTCCTGGCTGGGAAGAATTTAACCTTAAGCAACAAAATAGAGGCCTTCAAGATAGAATTGATCCGAAACCATTCCCACCGATGCCAAGTGCCCTCTCCTCTTTGCCACCCCGTGAAAACTTGCACGGAGTTAATGGCCGTCCAGGGAGATCCTCCTCATCTTCACCTCTTCCTTCTGCTGATTCTCTAACTTTGCCAGAAAATTACAGTGCAAAGAAAATACTTGGTGATTCTAGCATTCAAAATGGAAGGAAGGTGGTTGAAGAAACCACTGACGTTTTAGCCTTTTGGAAGCTTAAGGAGCTTCATACTTGGGCTGATTTTAGCTTGATTGTGGATATAATGGAAGCTGTAGATAATAACTTCAATGAGGCATCTACTTATTTAAACAAAATGGTTTCTAGTGACAATGTTGAGATCTGTAACGAGATGAGCACCTTAGGACTGCATTCTGCTGATGGTCTACCGTGCAATGGGAAGAATGATGTAACTATATCATTAGGAAGAACTGTTAATAATCCCATCCCTAGTTCCACACTAAAGGATGTGCAAGACATGCATCAAAATATTAATGATAAATTGTTTGAAAATAATTATCATGAAAGAAATTTCTTTCATAATGTTGGAAATCCAAAAATAGCTCTTTATTGCTCAAAGTCTGCTCCTATTGAGCCCGAGTGGGAAGAAGATGATATTTACCTGAGCCATCGGAAAGATGCTATAGCAATGATGAGGTCTGCATCTCAACATTCAAGGGCAGCCACTAATGCCTATCTTCGGAAGGATCATGCTTCAGCCAAGTATCATTCATCGAGGGCTCAAGAACAATGGCTAGCTGCAAAAATGTTAAATGCTAAGGCAGCCAATGAAATTTTACAAACAAGGAATAGTGAAAATGGGCTCTGGAAGTTGGACTTACATGGGCTTCATGCAGCAGAGGCTGTTCAAGCCTTGCAAGATCACTTGCTGAAAATCGAAACTCGGAATGCCTCCAATCGGTCGTTGTCGCCAAAGAAAGCTGAAAGGAAGGGTTTCCATCGTGTTTCATCCCTTGAGTATCTTAGTTGTATGGGCGTAAAGTTGGACAAAGAATTACAATCACCATTACCTAGGCATAGGCCGACATCATTGGAAGTCATAACAGGAGTAGGCAAACATAGCAGGGGGGAAGCTGCGCTACCAAAGGCCGTGACAAGTTTTCTTAGTGAAAATGGGTACCGTTTTGAACAGTTGAGGCCTGGGACGATCAGCGTTCGCCCAAAGTTTCGTAGGTAA
BLAST of CmoCh17G013030.1 vs. TrEMBL
Match: A0A0A0KA90_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G374690 PE=4 SV=1) HSP 1 Score: 896.7 bits (2316), Expect = 1.5e-257 Identity = 470/610 (77.05%), Postives = 511/610 (83.77%), Query Frame = 1
BLAST of CmoCh17G013030.1 vs. TrEMBL
Match: F6HGK1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0130g00370 PE=4 SV=1) HSP 1 Score: 388.7 bits (997), Expect = 1.3e-104 Identity = 235/439 (53.53%), Postives = 296/439 (67.43%), Query Frame = 1
BLAST of CmoCh17G013030.1 vs. TrEMBL
Match: A0A061DK57_THECC (Smr (Small MutS Related) domain-containing protein, putative isoform 1 OS=Theobroma cacao GN=TCM_001646 PE=4 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 1.5e-95 Identity = 220/433 (50.81%), Postives = 273/433 (63.05%), Query Frame = 1
BLAST of CmoCh17G013030.1 vs. TrEMBL
Match: A0A0D2TIK4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G048200 PE=4 SV=1) HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88 Identity = 210/431 (48.72%), Postives = 266/431 (61.72%), Query Frame = 1
BLAST of CmoCh17G013030.1 vs. TrEMBL
Match: M5WI32_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa006112mg PE=4 SV=1) HSP 1 Score: 328.2 bits (840), Expect = 2.1e-86 Identity = 208/437 (47.60%), Postives = 271/437 (62.01%), Query Frame = 1
BLAST of CmoCh17G013030.1 vs. TAIR10
Match: AT5G23520.1 (AT5G23520.1 smr (Small MutS Related) domain-containing protein) HSP 1 Score: 276.2 bits (705), Expect = 4.8e-74 Identity = 180/449 (40.09%), Postives = 250/449 (55.68%), Query Frame = 1
BLAST of CmoCh17G013030.1 vs. NCBI nr
Match: gi|659100734|ref|XP_008451240.1| (PREDICTED: uncharacterized protein LOC103492590 [Cucumis melo]) HSP 1 Score: 899.0 bits (2322), Expect = 4.3e-258 Identity = 473/610 (77.54%), Postives = 509/610 (83.44%), Query Frame = 1
BLAST of CmoCh17G013030.1 vs. NCBI nr
Match: gi|449462475|ref|XP_004148966.1| (PREDICTED: uncharacterized protein LOC101223137 [Cucumis sativus]) HSP 1 Score: 896.7 bits (2316), Expect = 2.1e-257 Identity = 470/610 (77.05%), Postives = 511/610 (83.77%), Query Frame = 1
BLAST of CmoCh17G013030.1 vs. NCBI nr
Match: gi|225463171|ref|XP_002267329.1| (PREDICTED: uncharacterized protein LOC100263151 [Vitis vinifera]) HSP 1 Score: 388.7 bits (997), Expect = 1.9e-104 Identity = 235/439 (53.53%), Postives = 296/439 (67.43%), Query Frame = 1
BLAST of CmoCh17G013030.1 vs. NCBI nr
Match: gi|590709627|ref|XP_007048605.1| (Smr (Small MutS Related) domain-containing protein, putative isoform 1 [Theobroma cacao]) HSP 1 Score: 358.6 bits (919), Expect = 2.1e-95 Identity = 220/433 (50.81%), Postives = 273/433 (63.05%), Query Frame = 1
BLAST of CmoCh17G013030.1 vs. NCBI nr
Match: gi|823253963|ref|XP_012459624.1| (PREDICTED: uncharacterized protein LOC105780062 [Gossypium raimondii]) HSP 1 Score: 335.1 bits (858), Expect = 2.5e-88 Identity = 210/431 (48.72%), Postives = 266/431 (61.72%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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