CmoCh16G002310.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTATATATATAGAAGTGGAAGAAAAAGGAAGTGAGTAAGTCAATATCATTGCGTTGATTATTCAGACCCATCATATAATGGATGAATTTTTCCAAACCCTTCATCCTTCAAAGGCGTTGGTTAACTTCCAAGCGTAATGATTCAGAAGTTTTCAAAGTCCAAATGGTTTGCCCCACGGTTCCCTCTGAGACGACTTCCGAAGTCTTCCCTTCAACTTCTTTAATGCTCTATAAGCACAAATCCATGTTCATCGGTAGCTTCAACCTTCCCGTCCTGCTCCGAAGTTCCACAGTTCTTGCGAATGTCTACCCCTTTAGAGTAATCTCTCAAATCCCTCTTGATCTTTTCTTGAATTTTGATTTTTTTTCAGAATCATGAGGATTTGATGAACTCCCATTTGTGTTCTTGGTTAATTTGATGTATAGCAATCTGTTGTGTAATGAGTATCATTATTGTCTTGTTGAACTTGTTTTAGATATTATCACTCACTCCCACCTGTGAGCAAGGTGTATGGGGTGAGCTGTTTGATGACCACTGCTGCTTACTATCTCCAGCTTTATGACCCTAAGAACATAGCTCTGATCTACAGTCTTGTAATTAAAAAGTTTCAGGTAATACAATTTTGTGGATTCATAGTTTCCAGATTTTGTTTTCTTCAATATGTTTTTGCTATAACTGCTTCGTTCTTGAACAGATTTGGAGGCTCATTACTAACTTCTTCTTCCTCGGCCCGTTTTCGTTTCGGTTTGCTTTTCGTCTGATAATCATGTAAAAACCATACCACTTTCAAGTGTTCATCTTTATTTTTTGAGCTATAAGCTTAGAAGTAGGATTAAGAGTACGTTTGGGAATGATTTTGAATGATTAAAAACATGTTTGAGAGTGATTTTGTGATTTTAACCTTTTCAAAATCACTCTCGAACATGTTCTAAAACTAAAAACAATAGAATTTGTATGATATTTGTATAATAACTATGCAATTTGAACTTCACAGAGCAAAATATGGTGTATCATTGGAGAGAGGTCCCTTTGATAAAAGGACTGCAGACTATGTGTGGATGTTGATTTTTGGAGCTCTTTCACTTCTGGTGAGTTTGATTTGGATTTTTTGCAAATTGTTGTCCGCATCATAGAATATTGGTGTTCTTAAATTTCATTAACAAGAACAATGAGAAAATTAGCTATGATTTTGACAGTTCTTGAACATTTTGAGTACTAAGCTCAAAAATCCTAATATTTGGTACTTCCATAAGCCTTCAAATGATGATATCTGCTATCACTAATTGGTTATGCATTTTTTTAACCCTCAGGTGATGGCAGCCATTCCATATTGTTGGACTCCATTCATGGGAAGTTCTTTGGTTTTCATGATTGTCTACATCTGGAGTCGTGAGTTCCCAAATGCTCGTATCAACATCTACGGTGTCGTTTCGTTGAAGGTTAGTAACACATTTGAATGCATGAAGTTCGTCTGAAAATCTCTTTAATTGGGATTTGATTGTCTCGTTTCCTATATTAGAATGTTTCTCCGTGTTTTGAAGTACTTGAAAAGTCATTCCAATCAGGCTCTAAGTTCGCCAACTTATGCAGCTAATTGATGATTCCGAATCTGGGATTTTTTCTTTTTCTCATTGGTAATATTGATATTCTACAGGGATTCTATCTTCCTTGGGCAATGCTGGCTTTAAATCTAATCTTTGGTGATCTCTTGATGCCAGACATTTTGGGAATGGTGGCAGGGCATCTTTATTATTTTTTGACTGTTCTACATCCTCTTGCTGGTGGGAAATTCAACCTCAAAACCCCTTTCTTGATGTATCCTACATACATTAATATGTACATTCATATGCATGCATATACACACACACACATATATATTGTAACGGCCCAACCCCACCGCTAGCAGATGTTGTCCTTTTTGGGCTTCCCCTCAATGTTTTTAAAACGCGTCTGCTATAAAGAGGTTTTCACACTCTTATAAAGAATGTTTTGTTCTCCTCGAACAACGTGAGGTCTCACAATCCACCCACCTTTAGGGCCCAACGTCCTCACTGACACTTGTTCCCTTCTCCAATCGATGTGAGGAACCCCAATCCACCCCCCTTCAGGGCCCAGCGTCCTTGTTGGCATACTGCCTCTTGTCCACCCTCCTTTAGGGCTTAGCATCCTCGCTGGCACATCGCTCGATGTCTGCCTCTGATACCATTTGTAACGACCCAAGCCTACCGGTAGCAGATATTGTCCTCTTTGGGCTTTCACTTTCGGGCTTGTGTGCCAACGAGGACGCTAGGCCTCAAGGGGGTGGATTATGAGATCTCACATCGGTTGGAGAAGGGAACAAAATATTCCTTATAAGGGTGTGAAAATCTCTCCCTAACAGACGCGTTTTAAAATAGTGAGGCTGACAGCGATACGTAACAGGTCAAAGCGGACAATATCTACTAGCGGTGGGCTTGGGCTTGGGTTGGAGGATACTGGGCCCCCAAGGGAAGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAACACACACGTTTTAAGATAGTGAGGCTAACGGCGATACGTAACGGGCCAAAACGGTCAATATCTACTAGCGGTGGGCTTGGGTTGTTACACATGTCCTTGTTTTTTTGTGTTGTTAGTACAGTATATGCAAATAAGGAAATTTAATCTTCAAGTATTGAAATGAAGCTAATAAATTTCTAAGCATGGGAATGGGAAGCAGCGAACTGCATTAATTCTTCTGTGAAACCTTAATGGCCTTCCAGTCACAAGCTAGTAGCATACTGGGGTGAAGGGACACAATTCAACTCTCCAGTACAACGTGACCCTTCTGCTGGCACTGCTTTTCGAGGAAGAAGTTACCGTCTTAATTCTTCTCAAACGAACACCCGGGAACGAACACAAACACGAAGACGCTCTTCTCCCTCTCCACCACCACCACCACCACAGCAAGGTTCTAATCAGCCTGCTTTCAGTGGCAGAAGTTATCGTCTTGATAGCTAAGTCTTTCTCGAACCACATTATATACAATATTATTATCTTCTAGCTTTCCAAAGCTAATTGTCAAGTGAACCATAACATGGTTTTATGAAACATCTTTAAGAACATGGAGAAGTTTAGAATCCATGGTTTGTAATGAAATATGTCTATCTGATATGCATAATGAGAAGAGTTTAAAACTTTTATCTACTTCTAGCTTCTTATAGACAAGGTGTAACAGTCCAAGCCCACCGTTAGCAGATGTTGTCCTTTTTGGACTTCCCCTGAAGGCTTTAAAATGCGTCTGTTAGGGAAAGGTATCCACA ATTATATATATAGAAGTGGAAGAAAAAGGAAGTGAGTAAGTCAATATCATTGCGTTGATTATTCAGACCCATCATATAATGGATGAATTTTTCCAAACCCTTCATCCTTCAAAGGCGTTGGTTAACTTCCAAGCGTAATGATTCAGAAGTTTTCAAAGTCCAAATGGTTTGCCCCACGGTTCCCTCTGAGACGACTTCCGAAGTCTTCCCTTCAACTTCTTTAATGCTCTATAAGCACAAATCCATGTTCATCGGTAGCTTCAACCTTCCCGTCCTGCTCCGAAGTTCCACAGTTCTTGCGAATGTCTACCCCTTTAGAATATTATCACTCACTCCCACCTGTGAGCAAGGTGTATGGGGTGAGCTGTTTGATGACCACTGCTGCTTACTATCTCCAGCTTTATGACCCTAAGAACATAGCTCTGATCTACAGTCTTGTAATTAAAAAGTTTCAGATTTGGAGGCTCATTACTAACTTCTTCTTCCTCGGCCCGTTTTCGTTTCGGTTTGCTTTTCGTCTGATAATCATAGCAAAATATGGTGTATCATTGGAGAGAGGTCCCTTTGATAAAAGGACTGCAGACTATGTGTGGATGTTGATTTTTGGAGCTCTTTCACTTCTGGTGATGGCAGCCATTCCATATTGTTGGACTCCATTCATGGGAAGTTCTTTGGTTTTCATGATTGTCTACATCTGGAGTCGTGAGTTCCCAAATGCTCGTATCAACATCTACGGTGTCGTTTCGTTGAAGGGATTCTATCTTCCTTGGGCAATGCTGGCTTTAAATCTAATCTTTGGTGATCTCTTGATGCCAGACATTTTGGGAATGGTGGCAGGGCATCTTTATTATTTTTTGACTGTTCTACATCCTCTTGCTGGTGGGAAATTCAACCTCAAAACCCCTTTCTTGATTCACAAGCTAGTAGCATACTGGGGTGAAGGGACACAATTCAACTCTCCAGTACAACGTGACCCTTCTGCTGGCACTGCTTTTCGAGGAAGAAGTTACCGTCTTAATTCTTCTCAAACGAACACCCGGGAACGAACACAAACACGAAGACGCTCTTCTCCCTCTCCACCACCACCACCACCACAGCAAGGTTCTAATCAGCCTGCTTTCAGTGGCAGAAGTTATCGTCTTGATAGCTAAGTCTTTCTCGAACCACATTATATACAATATTATTATCTTCTAGCTTTCCAAAGCTAATTGTCAAGTGAACCATAACATGGTTTTATGAAACATCTTTAAGAACATGGAGAAGTTTAGAATCCATGGTTTGTAATGAAATATGTCTATCTGATATGCATAATGAGAAGAGTTTAAAACTTTTATCTACTTCTAGCTTCTTATAGACAAGGTGTAACAGTCCAAGCCCACCGTTAGCAGATGTTGTCCTTTTTGGACTTCCCCTGAAGGCTTTAAAATGCGTCTGTTAGGGAAAGGTATCCACA ATGTCTACCCCTTTAGAATATTATCACTCACTCCCACCTGTGAGCAAGGTGTATGGGGTGAGCTGTTTGATGACCACTGCTGCTTACTATCTCCAGCTTTATGACCCTAAGAACATAGCTCTGATCTACAGTCTTGTAATTAAAAAGTTTCAGATTTGGAGGCTCATTACTAACTTCTTCTTCCTCGGCCCGTTTTCGTTTCGGTTTGCTTTTCGTCTGATAATCATAGCAAAATATGGTGTATCATTGGAGAGAGGTCCCTTTGATAAAAGGACTGCAGACTATGTGTGGATGTTGATTTTTGGAGCTCTTTCACTTCTGGTGATGGCAGCCATTCCATATTGTTGGACTCCATTCATGGGAAGTTCTTTGGTTTTCATGATTGTCTACATCTGGAGTCGTGAGTTCCCAAATGCTCGTATCAACATCTACGGTGTCGTTTCGTTGAAGGGATTCTATCTTCCTTGGGCAATGCTGGCTTTAAATCTAATCTTTGGTGATCTCTTGATGCCAGACATTTTGGGAATGGTGGCAGGGCATCTTTATTATTTTTTGACTGTTCTACATCCTCTTGCTGGTGGGAAATTCAACCTCAAAACCCCTTTCTTGATTCACAAGCTAGTAGCATACTGGGGTGAAGGGACACAATTCAACTCTCCAGTACAACGTGACCCTTCTGCTGGCACTGCTTTTCGAGGAAGAAGTTACCGTCTTAATTCTTCTCAAACGAACACCCGGGAACGAACACAAACACGAAGACGCTCTTCTCCCTCTCCACCACCACCACCACCACAGCAAGGTTCTAATCAGCCTGCTTTCAGTGGCAGAAGTTATCGTCTTGATAGCTAA
BLAST of CmoCh16G002310.1 vs. Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 6.9e-81 Identity = 150/264 (56.82%), Postives = 192/264 (72.73%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2) HSP 1 Score: 288.9 bits (738), Expect = 6.1e-77 Identity = 145/243 (59.67%), Postives = 182/243 (74.90%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 1.5e-75 Identity = 141/242 (58.26%), Postives = 180/242 (74.38%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2) HSP 1 Score: 284.3 bits (726), Expect = 1.5e-75 Identity = 138/242 (57.02%), Postives = 183/242 (75.62%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. Swiss-Prot
Match: DERL2_MOUSE (Derlin-2 OS=Mus musculus GN=Derl2 PE=1 SV=2) HSP 1 Score: 161.4 bits (407), Expect = 1.5e-38 Identity = 86/232 (37.07%), Postives = 133/232 (57.33%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. TrEMBL
Match: A0A0A0KU47_CUCSA (Derlin OS=Cucumis sativus GN=Csa_4G022960 PE=3 SV=1) HSP 1 Score: 486.5 bits (1251), Expect = 2.2e-134 Identity = 244/285 (85.61%), Postives = 258/285 (90.53%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. TrEMBL
Match: B9T8V1_RICCO (Derlin OS=Ricinus communis GN=RCOM_2090490 PE=3 SV=1) HSP 1 Score: 423.7 bits (1088), Expect = 1.8e-115 Identity = 215/280 (76.79%), Postives = 237/280 (84.64%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. TrEMBL
Match: A0A0B2RKL7_GLYSO (Derlin OS=Glycine soja GN=glysoja_039595 PE=3 SV=1) HSP 1 Score: 417.5 bits (1072), Expect = 1.3e-113 Identity = 209/281 (74.38%), Postives = 233/281 (82.92%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. TrEMBL
Match: I1JVS9_SOYBN (Derlin OS=Glycine max GN=GLYMA_04G121000 PE=3 SV=1) HSP 1 Score: 416.8 bits (1070), Expect = 2.1e-113 Identity = 208/281 (74.02%), Postives = 233/281 (82.92%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. TrEMBL
Match: A0A067JF38_JATCU (Derlin OS=Jatropha curcas GN=JCGZ_26288 PE=3 SV=1) HSP 1 Score: 415.6 bits (1067), Expect = 4.8e-113 Identity = 210/281 (74.73%), Postives = 237/281 (84.34%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. TAIR10
Match: AT4G29330.1 (AT4G29330.1 DERLIN-1) HSP 1 Score: 302.0 bits (772), Expect = 3.9e-82 Identity = 150/264 (56.82%), Postives = 192/264 (72.73%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. TAIR10
Match: AT4G21810.1 (AT4G21810.1 DERLIN-2.1) HSP 1 Score: 143.7 bits (361), Expect = 1.8e-34 Identity = 75/213 (35.21%), Postives = 120/213 (56.34%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. TAIR10
Match: AT4G04860.1 (AT4G04860.1 DERLIN-2.2) HSP 1 Score: 142.9 bits (359), Expect = 3.0e-34 Identity = 75/213 (35.21%), Postives = 120/213 (56.34%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. NCBI nr
Match: gi|659107832|ref|XP_008453882.1| (PREDICTED: derlin-1.1-like isoform X1 [Cucumis melo]) HSP 1 Score: 488.0 bits (1255), Expect = 1.1e-134 Identity = 250/286 (87.41%), Postives = 263/286 (91.96%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. NCBI nr
Match: gi|449458345|ref|XP_004146908.1| (PREDICTED: derlin-1.1 isoform X1 [Cucumis sativus]) HSP 1 Score: 486.5 bits (1251), Expect = 3.2e-134 Identity = 244/285 (85.61%), Postives = 258/285 (90.53%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. NCBI nr
Match: gi|449458347|ref|XP_004146909.1| (PREDICTED: derlin-1.1 isoform X2 [Cucumis sativus]) HSP 1 Score: 442.6 bits (1137), Expect = 5.2e-121 Identity = 223/262 (85.11%), Postives = 236/262 (90.08%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. NCBI nr
Match: gi|659107834|ref|XP_008453883.1| (PREDICTED: derlin-1.1-like isoform X2 [Cucumis melo]) HSP 1 Score: 441.0 bits (1133), Expect = 1.5e-120 Identity = 228/263 (86.69%), Postives = 240/263 (91.25%), Query Frame = 1
BLAST of CmoCh16G002310.1 vs. NCBI nr
Match: gi|255588641|ref|XP_002534670.1| (PREDICTED: derlin-1 [Ricinus communis]) HSP 1 Score: 423.7 bits (1088), Expect = 2.5e-115 Identity = 215/280 (76.79%), Postives = 237/280 (84.64%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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