CmoCh15G015220.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G015220.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr15 : 10319516 .. 10322374 (-)
Sequence length507
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACCAACAAAAATTGATTGTTTGAGGAAGAATTCTCCCACTGATCGTATCCATTATGTACGCTGAGTTTATGTTTTGTTTGAACTGAGTTTGATATGCACAATATTTGAATCTTTTCTGTTTGTCATATTATAAAGACAGGATTCTTGTGCTGCTGGGGATTCACGGTCATCTATCTAACTCTTTGCTACGCAGGCTGCTCGTGTAGAAAGCATTGTGGCAGGTATATACAACATCTCTACACAGATACACATGCACATTACAACTTTTAATCATATTGCTATGGTGCTGCTGCTTTGTTTTGAATTTCAAATTGTGGTTTGAAACTTTTAAGCCGATAAGAAAAGGATCCTGAGAGAAGGATTAGATTGAAAGCAACAAGTTACTTGACCTCCATGCGGGAGAAGATGTGTGATAGGAGCCACAATGCTGAGAAAAGGAAGTAAGGAATCGCATCTAAACGAAATGTACTGAATATTGTATGATTTTGTGGAGTAACATTATGTGCTACACTTCATGAATTTAATAGGTTTAACTGCTTGCTCCATTGCCCATGACTTGTTTCGTCGTGTCGTCGTGTATAATAAATTTCATACGAGCCACTTCTTTATGCTAAATCTGCTTCAACAGAACTATGATATCAGTTGATATCGAACAAATGGATCAATCTTGAATTTCTGTTCTCAGAAAATAATACTAAACACTGATATGTTATCAAGCCACATACATATATATAAGCTATGATTAAGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAGGCTACTTAAGGAAAATGTAGTTTTTATAACGTTTTTATTAAAATATTTATGGTGTTATTTAGTGTTTGAAAGAAGTGACAGCCACCCACGTGTTGATTCTATTTTATGGTATAAAAATTAAGAACAAATGAAGATAATTGGAATTTAGTGGACTATGTTTGGTTTGGACTTTAAATCACCTAACCAAACCATTATTGTTATTGTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTGTTTGGTTAATTCTATGGTCTTTCCAATTGAATGGAAAATGCCTTTTTCATTTCTTTCTTTATTTTATGAATTAAATGGTAAGCGAGTCATTAGAAGTAAGAACTGTGTATTTTTTTTCTTATCTTTTCTTTTAATTCAACCCTAAGATAAGGGTTGACGAATTAGATGATCCCTATCCTCAATGCCAATATTTCTATATTATATCATTCAATTTTCCTTCCATTAAATTATTTAATGCAAGTGATTCATTTTGTAGAATTAATAATATGATTATTAACCATCAACATAATCATAGATTAATTAATTAATTTATTTATTTATTTTAAAAAAACTCATTTAAACCATATTTTATTGTTTTTTTTAGAGTGTATTGTAAATTTAAAAAATTTATAAAAAAAAACTATATTTAATTCATATACACCAAGTCCACAGTGATTTGTGTGATCAACATCGAATCATCAGCCCATGGATTTGTTTAGTTATTTTCAAAAGAAATAAATAAATAAAAAAACTGGGAAAGACGTGTTGGACTAAGTTTGGGCAATAATGAATTTGCGTAGTGCCCATCAGCCATCGCATTCCAAATTAAATATATACCCAAAACCCAACGAACCAAACACACACAACAACAAAAAGAAAAGTCTTCCGTTTCCAGTTCCAAAACCAAAGCCCCTCTCTGCTCTGTCTCTGTTCTTGGAAGAGACTACAATTAAAAAGGTTCAAAAGAAAGCAAAATGGAGGGTTTGATTCCGATGTTCTACAGAGCGATGAAGAAAACCAGAATCAGAAGCCAATATTCAGTACTTTCCCCTGAAGCAGCAGCAGCACCTTCTCCATCTTTCAACATTGCTGATTTCTACGTGGATCCCCCTTCAACCCACGTCTTCCCCACTTCCAAATCTGAGGACCCTGGCGCCACCAGGGCTCACCGGAGATACAACTCATTCGGCGGATCTACGCCGGAGGAGTGGAGGAGAACTACCTCCGCCGCCGCCGCCGCCAAGTCCAGTCATGGGCCACAGCTTGTTAGGTTCAGAAGCCAGAGGATTCTGTCGTGCTTGACTGGGCAGTGAGATTTTGATGGGTTTGTTGTTGATTTTGTGATTCAATTCAGGGATTGAACTTAATGTGTACAGCATAATCATCTTCACTCCTTTCTGGTGAAACCCATTAAAGATTTTTCTATTGCAAATTTATGCTTCTTTTGAGGTTTTTTTTTCTTCTTCTTCTTTGATTGCTATTGCATTGCAAAGTGAGTCAAATTGGAATTGCTGGGCAAAATTGATGACTTTTTTTCGCAGTCATCCATGTCTAGAATCCTTGTTACTTTCTTAAATGGTAATATTGGTTTTTCTTGTCGACTATCAATCATGCCCTGATAGCTTAGGATTAATTAACATACTTTCCATAAACTTGCTTCTTTTTTTTTTTTCCTTTTTAATTCAACTAGGATTTCAAGAATGTTTTAGAAAAGTTATTATAGATGGTAAGATGATAATTGCTCGTCATCTTTATGCATAGATTTGTAATTTAGGGGATGAAATGATTCACAAGGTAACAAAGACACAATGGTTTAGGGTTTAGGGTTGTAAGCTTAGAATGGATTTACCTTTTATAAGGTTATAATGATGTACCCTTACCTAGGATTGAGTTGGAGATTTGGACATTTTTCCTTTCTTAGAGGGAACGAGACCAGACGCTCGAGTCATTCCCTATTGACCATAAAGAAGTTAGGGCTAGCCTTAGTCTCGAGCTTACCTAG

mRNA sequence

ATGTTACCAACAAAAATTGATTGTTTGAGGAAGAATTCTCCCACTGATCGATTCTTGTGCTGCTGGGGATTCACGGTCATCTATCTAACTCTTTGCTACGCAGGCTGCTCGTGTAGAAAGCATTGTGGCAGAGCGATGAAGAAAACCAGAATCAGAAGCCAATATTCAGTACTTTCCCCTGAAGCAGCAGCAGCACCTTCTCCATCTTTCAACATTGCTGATTTCTACGTGGATCCCCCTTCAACCCACGTCTTCCCCACTTCCAAATCTGAGGACCCTGGCGCCACCAGGGCTCACCGGAGATACAACTCATTCGGCGGATCTACGCCGGAGGAGTGGAGGAGAACTACCTCCGCCGCCGCCGCCGCCAAGTCCAGTCATGGGCCACAGCTTATTTGTAATTTAGGGGATGAAATGATTCACAAGAGGGAACGAGACCAGACGCTCGAGTCATTCCCTATTGACCATAAAGAAGTTAGGGCTAGCCTTAGTCTCGAGCTTACCTAG

Coding sequence (CDS)

ATGTTACCAACAAAAATTGATTGTTTGAGGAAGAATTCTCCCACTGATCGATTCTTGTGCTGCTGGGGATTCACGGTCATCTATCTAACTCTTTGCTACGCAGGCTGCTCGTGTAGAAAGCATTGTGGCAGAGCGATGAAGAAAACCAGAATCAGAAGCCAATATTCAGTACTTTCCCCTGAAGCAGCAGCAGCACCTTCTCCATCTTTCAACATTGCTGATTTCTACGTGGATCCCCCTTCAACCCACGTCTTCCCCACTTCCAAATCTGAGGACCCTGGCGCCACCAGGGCTCACCGGAGATACAACTCATTCGGCGGATCTACGCCGGAGGAGTGGAGGAGAACTACCTCCGCCGCCGCCGCCGCCAAGTCCAGTCATGGGCCACAGCTTATTTGTAATTTAGGGGATGAAATGATTCACAAGAGGGAACGAGACCAGACGCTCGAGTCATTCCCTATTGACCATAAAGAAGTTAGGGCTAGCCTTAGTCTCGAGCTTACCTAG
Homology
[Close]
BLAST of CmoCh15G015220.1 vs. TrEMBL
Match: A0A0A0LL24_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123040 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.7e-12
Identity = 52/91 (57.14%), Postives = 59/91 (64.84%), Query Frame = 1 

Query: 44  RAMKKTRIRSQYSVLSPEAAA-----APSPSFNIADFYVDPPSTHVFPTSKSEDPGATRA 103
           RAMKK R R QY+VLS +A +     A S SFNIADFYVDPPS       KSE     RA
Sbjct: 10  RAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSI------KSEG----RA 69

Query: 104 HRRYNSFGGSTPEEWRRTTSAAAAAKSSHGP 130
           +RRYNS+ GST +EWRR +  AA   SSHGP
Sbjct: 70  YRRYNSYAGSTTQEWRR-SGVAAGKSSSHGP 89

[Close]
BLAST of CmoCh15G015220.1 vs. NCBI nr
Match: gi|449442349|ref|XP_004138944.1| (PREDICTED: uncharacterized protein LOC101210346 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 5.3e-12
Identity = 52/91 (57.14%), Postives = 59/91 (64.84%), Query Frame = 1 

Query: 44  RAMKKTRIRSQYSVLSPEAAA-----APSPSFNIADFYVDPPSTHVFPTSKSEDPGATRA 103
           RAMKK R R QY+VLS +A +     A S SFNIADFYVDPPS       KSE     RA
Sbjct: 10  RAMKKNRRRRQYTVLSTKAESEAETEAASLSFNIADFYVDPPSI------KSEG----RA 69

Query: 104 HRRYNSFGGSTPEEWRRTTSAAAAAKSSHGP 130
           +RRYNS+ GST +EWRR +  AA   SSHGP
Sbjct: 70  YRRYNSYAGSTTQEWRR-SGVAAGKSSSHGP 89

[Close]
BLAST of CmoCh15G015220.1 vs. NCBI nr
Match: gi|659082088|ref|XP_008441665.1| (PREDICTED: uncharacterized protein LOC103485749 [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 6.9e-12
Identity = 54/91 (59.34%), Postives = 60/91 (65.93%), Query Frame = 1 

Query: 44  RAMKKTRIRSQYSVLSPEAAA-----APSPSFNIADFYVDPPSTHVFPTSKSEDPGATRA 103
           RAMKK R R QY+VLS +A +     A S SFNIADFYVDPPS       KSE     R 
Sbjct: 10  RAMKKNRRRRQYTVLSTKAESESEGEAASLSFNIADFYVDPPSI------KSEG----RG 69

Query: 104 HRRYNSFGGSTPEEWRRTTSAAAAAKS-SHG 129
           +RRYNS+GGSTP+EWRR  S  AA KS SHG
Sbjct: 70  YRRYNSYGGSTPQEWRR--SGVAAGKSRSHG 88

The following BLAST results are available for this feature:
BLAST of CmoCh15G015220.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G015220.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LL24_CUCSA3.7e-1257.14Uncharacterized protein OS=Cucumis sativus GN=Csa_2G123040 PE=4 SV=1[more]
BLAST of CmoCh15G015220.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh15G015220.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442349|ref|XP_004138944.1|5.3e-1257.14PREDICTED: uncharacterized protein LOC101210346 [Cucumis sativus][more]
gi|659082088|ref|XP_008441665.1|6.9e-1259.34PREDICTED: uncharacterized protein LOC103485749 [Cucumis melo][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh15G015220CmoCh15G015220gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh15G015220.1CmoCh15G015220.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh15G015220.1.CDS.5CmoCh15G015220.1.CDS.5CDS
CmoCh15G015220.1.CDS.4CmoCh15G015220.1.CDS.4CDS
CmoCh15G015220.1.CDS.3CmoCh15G015220.1.CDS.3CDS
CmoCh15G015220.1.CDS.2CmoCh15G015220.1.CDS.2CDS
CmoCh15G015220.1.CDS.1CmoCh15G015220.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh15G015220.1.exon.5CmoCh15G015220.1.exon.5exon
CmoCh15G015220.1.exon.4CmoCh15G015220.1.exon.4exon
CmoCh15G015220.1.exon.3CmoCh15G015220.1.exon.3exon
CmoCh15G015220.1.exon.2CmoCh15G015220.1.exon.2exon
CmoCh15G015220.1.exon.1CmoCh15G015220.1.exon.1exon