CmoCh15G011380.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G011380.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Embryo defective 1923
Location	Cmo_Chr15 : 7947234 .. 7949776 (+)
Sequence length	1210

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCATGTTATACCCAAATTCCTCGTTTAGCTATCGAATTCATCAGTCATGGCGACTGCACTTATCGCCGGCCTTTCTTCAACCCTAAAACTTCCTCTTCTCACAGCAATTTCATCTTCCCCTTTAAACTTTCGACCTAAAAGCCAAAACGTTCAATTTTGTAGCTCCCCTTGCAAAATTCACACCATTTGGAACAAACCCACAAGAAATTGCAATGTGTTATCGCATAATCTAAGTGGGTTTCTAATTTCGAGGAGCTTGGGACCTTTCACTGTCTCTGCCGGAGCTGTTGAACCTCAGAATGATGATAGAGAGGAGGGTACTATGCCGGAACGGTTCAGGTACTTGACCAAAGAAGCTCCTGATCCTCCTGTGAGGTGGCCTTTCTTCGTCGGTAAATTCTTCTACTCGTTTACAATTTGTTTTTCATAGATGTTTTGGACGTTTAAGAATCATTTCTGTTCTTGGTTTGTTTAATTTTACCACTTAGTTTCAGTATAATCTTCAAACTTGTTAGTGGGTTTTGCGATTGTTGTTGAATTCAGGGTAGAAAAGATTGCCTAACTTTGTTGATAATCTTGGAATTTTTGTTATTGTAACAAGAACAGCTGTATCTGTCATAGTTTCTAAGCTCTGTAGTTTTGAATTTCATTGCATAGGTTAAGGTGCTGTTTGTTATCCTATGGCATAATAATAGGATCTTGAGACAGGTTGAGAGGTCATATGGGAGGTAGCTAGGCTTAGTACCTCCCCATGAACTTCATTCACTAGGCCTTACCGAATGAAGTTATTAGGACGGAGACTAATCGGTATGTGTTTGAAACTTGGACACTGATTGTGAGATCCCACGTTAGTTGGAGAGGAGAATGAAACATTCTTTATAAGGGTGTGGAAATCTCTCTTTAGTAGGCGGGTTTTAAAAACCTTGAGGGAAAGCCCAAAGAGGACAATATCTACTAGCGGTGGGCTTGGGGTGTTACAAACGATATCAGAGCTAGACACCGAGCAATGTGCTAGTGAGGAGGCTGAACCTTGAAGGGGGTGGACACGAGGTGGTGTGCCAGCAAGGACGCTGGGTCCCCGAAGGGGGGTGGATTATGAGATCCCACATCGGTTTGGGAGAAAAACGAAACATTTTTTTATAAAGGTGTGGAAACCTCTCCCTAGTAGACGCATTTTAAAAACATTGAGGGAAATCCCAAAGAGGACAATATCTGCTAGAGGTGGCCTTGAGACAATACAAATAGTATCAGAGCCAGACACTGGGCGATGTGCGAGGAGGTTGAACCCCGAAAGGAGTGGACACGAGGTAGTGTGCCAGCAAGGGCGCTGAACTCGAAGGGGGGTAGAGAGATCCCACATTGGTTTAGAGAAGAACGAAATATTCTTTATAAGAGTGTTGAAACCAATCCCTACGCGTTTTAAAAATCTTGAGGGAAAGCCCAAAAAGGACACCGGGTGATGTGCGAGGAGAGAGTTTTGTGTCTTTAAATCATTTATGATATACTGAATGCATATTCTTAGTAATGTATTTGTATCATATTCATTACAATTCCTTTCTGAAGAGAAAAAAAGACAACATTAGCAGCTTATTCTTGAGCGTCGTCCTCTGTTCTTAATCATAATAATTCAACCCGACATAAATTCTTGAGTTCATTGTCTTTTAATACGATCGATCTCGTTATCGAAAGATGAATTACTGTTAATTACCTTTGGTTATAATGCAGCTCTTGCATTTATTCTCTATGCTTGGAAAGCAGTCTTTTTTGAACTTGGTAACTGGAGAAAGGCTGTTCTTTGCATCTTCAATTTTGTGGGATACATATTAAAAGGTGCCTTAGCTCTCATCCTCTATGTTATTGGAGATCCCATCACTTCTATGATAAGAGGAATCGAGACGACATTCTACACGATTCGATCTTTCTACTCGAGTGTAGTTGCATACGCACCCGTTCCCGAGCTAACCACACTAATCATCCTAGCCTCAACCGTGGTTGCAATCTCAGAAGCCAGTGTCCCTGATTCCGTTAGCACTCAACCATATCTTCTAACACTATCAGGGCTTGCTAGCTACGCAGCCGTGCGAGCGTACATTTCCGAGCCATTCTTCTGGACGATTCTGTTGGGAGTTTACAGTTTCTCGAAGTTCGTGAAGAAGAGAGACGACGTAACGTCTGCGCTGCCTGCTGCTGCTGTGTTTGCTGCCATTGGTGAGCCATGGGTTAGGATTTTGGCTATGGGTTCGTTTATGGGTCTGGCTATTTGGCACCATTGGAAGAAGGTTTCACAAGGAAAGGAAAGGGAAGAGGGTGTGTATGAGAGGGATGTTCCGGTGCCTCTTTTGGGTGCGGCTTTGGCTATTGGGATCCATGCGGCGGCCAAATGGGCTGGTTATAGGCACTTGACATGGATGATTGTATGAATATAAAGGCTAGCTTTTGATTTGAGAGATGATTTTAGAAGAACCCTCTTATTTATCATTTGATTTATATTTTGAATCTTTAGTCTTTTGTTTTATAACCACAAATTCATACATTAATTT

mRNA sequence

AATCCATGTTATACCCAAATTCCTCGTTTAGCTATCGAATTCATCAGTCATGGCGACTGCACTTATCGCCGGCCTTTCTTCAACCCTAAAACTTCCTCTTCTCACAGCAATTTCATCTTCCCCTTTAAACTTTCGACCTAAAAGCCAAAACGTTCAATTTTGTAGCTCCCCTTGCAAAATTCACACCATTTGGAACAAACCCACAAGAAATTGCAATGTGTTATCGCATAATCTAAGTGGGTTTCTAATTTCGAGGAGCTTGGGACCTTTCACTGTCTCTGCCGGAGCTGTTGAACCTCAGAATGATGATAGAGAGGAGGGTACTATGCCGGAACGGTTCAGGTACTTGACCAAAGAAGCTCCTGATCCTCCTGTGAGGTGGCCTTTCTTCGTCGCTCTTGCATTTATTCTCTATGCTTGGAAAGCAGTCTTTTTTGAACTTGGTAACTGGAGAAAGGCTGTTCTTTGCATCTTCAATTTTGTGGGATACATATTAAAAGGTGCCTTAGCTCTCATCCTCTATGTTATTGGAGATCCCATCACTTCTATGATAAGAGGAATCGAGACGACATTCTACACGATTCGATCTTTCTACTCGAGTGTAGTTGCATACGCACCCGTTCCCGAGCTAACCACACTAATCATCCTAGCCTCAACCGTGGTTGCAATCTCAGAAGCCAGTGTCCCTGATTCCGTTAGCACTCAACCATATCTTCTAACACTATCAGGGCTTGCTAGCTACGCAGCCGTGCGAGCGTACATTTCCGAGCCATTCTTCTGGACGATTCTGTTGGGAGTTTACAGTTTCTCGAAGTTCGTGAAGAAGAGAGACGACGTAACGTCTGCGCTGCCTGCTGCTGCTGTGTTTGCTGCCATTGGTGAGCCATGGGTTAGGATTTTGGCTATGGGTTCGTTTATGGGTCTGGCTATTTGGCACCATTGGAAGAAGGTTTCACAAGGAAAGGAAAGGGAAGAGGGTGTGTATGAGAGGGATGTTCCGGTGCCTCTTTTGGGTGCGGCTTTGGCTATTGGGATCCATGCGGCGGCCAAATGGGCTGGTTATAGGCACTTGACATGGATGATTGTATGAATATAAAGGCTAGCTTTTGATTTGAGAGATGATTTTAGAAGAACCCTCTTATTTATCATTTGATTTATATTTTGAATCTTTAGTCTTTTGTTTTATAACCACAAATTCATACATTAATTT

Coding sequence (CDS)

ATGGCGACTGCACTTATCGCCGGCCTTTCTTCAACCCTAAAACTTCCTCTTCTCACAGCAATTTCATCTTCCCCTTTAAACTTTCGACCTAAAAGCCAAAACGTTCAATTTTGTAGCTCCCCTTGCAAAATTCACACCATTTGGAACAAACCCACAAGAAATTGCAATGTGTTATCGCATAATCTAAGTGGGTTTCTAATTTCGAGGAGCTTGGGACCTTTCACTGTCTCTGCCGGAGCTGTTGAACCTCAGAATGATGATAGAGAGGAGGGTACTATGCCGGAACGGTTCAGGTACTTGACCAAAGAAGCTCCTGATCCTCCTGTGAGGTGGCCTTTCTTCGTCGCTCTTGCATTTATTCTCTATGCTTGGAAAGCAGTCTTTTTTGAACTTGGTAACTGGAGAAAGGCTGTTCTTTGCATCTTCAATTTTGTGGGATACATATTAAAAGGTGCCTTAGCTCTCATCCTCTATGTTATTGGAGATCCCATCACTTCTATGATAAGAGGAATCGAGACGACATTCTACACGATTCGATCTTTCTACTCGAGTGTAGTTGCATACGCACCCGTTCCCGAGCTAACCACACTAATCATCCTAGCCTCAACCGTGGTTGCAATCTCAGAAGCCAGTGTCCCTGATTCCGTTAGCACTCAACCATATCTTCTAACACTATCAGGGCTTGCTAGCTACGCAGCCGTGCGAGCGTACATTTCCGAGCCATTCTTCTGGACGATTCTGTTGGGAGTTTACAGTTTCTCGAAGTTCGTGAAGAAGAGAGACGACGTAACGTCTGCGCTGCCTGCTGCTGCTGTGTTTGCTGCCATTGGTGAGCCATGGGTTAGGATTTTGGCTATGGGTTCGTTTATGGGTCTGGCTATTTGGCACCATTGGAAGAAGGTTTCACAAGGAAAGGAAAGGGAAGAGGGTGTGTATGAGAGGGATGTTCCGGTGCCTCTTTTGGGTGCGGCTTTGGCTATTGGGATCCATGCGGCGGCCAAATGGGCTGGTTATAGGCACTTGACATGGATGATTGTATGA

Homology

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BLAST of CmoCh15G011380.1 vs. TrEMBL
Match: A0A0A0KM42_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141030 PE=4 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 2.1e-142
Identity = 268/349 (76.79%), Postives = 294/349 (84.24%), Query Frame = 1


Query: 1   MATALIAGLSSTLKLPLLTAISSSPLNFRPKSQNVQFCSSPCKIHTIWNKPTRNCNVLSH 60
           MAT LIA LSS LKLPLL+AISSSP  FR ++Q V F +SP  I T+W  PTRNCNV+SH
Sbjct: 1   MATTLIASLSSNLKLPLLSAISSSPSTFRRQTQTVPFSNSP--IQTLWLNPTRNCNVISH 60

Query: 61  NLSGFLISRSLGPFTVSAGAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFVALAFI 120
           N SGFLISR L  FTV A   E Q+DDREE TMPERFRYL KE  DPPVRWPFFVAL F+
Sbjct: 61  NRSGFLISRKLESFTVFAADFEAQSDDREESTMPERFRYLAKEGSDPPVRWPFFVALPFL 120

Query: 121 LYAWKAVFFELGNWRKAVLCIFNFVGYILKGALALILYVIGDPITSMIRGIETTFYTIRS 180
           LYAW+AV FELGNWRK V+ +  FV  +LKGALALILYVIGDPITS+IRGIET FYTIRS
Sbjct: 121 LYAWRAVLFELGNWRKIVVNLVGFVVSLLKGALALILYVIGDPITSVIRGIETAFYTIRS 180

Query: 181 FYSSVVAYAPVPELTTLIILASTVVAISEASVPDSVSTQPYLLTLSGLASYAAVRAYISE 240
           F+SS+VAYAPV ELTT+IILASTV+AISEAS PDSV +QPYLLTLSGLA YAAVR YISE
Sbjct: 181 FHSSIVAYAPVSELTTIIILASTVLAISEASAPDSVRSQPYLLTLSGLAGYAAVRGYISE 240

Query: 241 PFFWTILLGVYSFSKFVKKRDDVTSALPAAAVFAAIGEPWVRILAMGSFMGLAIWHHWKK 300
           PFFWTILL VY +S FVKKR+DV+SALPAAAVFAAIGEPWVRILAMGSF+ LAI HHWK 
Sbjct: 241 PFFWTILLCVYGYSSFVKKRNDVSSALPAAAVFAAIGEPWVRILAMGSFLALAITHHWKN 300

Query: 301 VSQGK---EREEGVYERDVPVPLLGAALAIGIHAAAKWAGYRHLTWMIV 347
           +SQGK   E E+GVY  D+P+PLLG ALAIGIH AAKWAGYRHLTWMIV
Sbjct: 301 LSQGKKEDEDEKGVYRWDIPLPLLGVALAIGIHGAAKWAGYRHLTWMIV 347

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BLAST of CmoCh15G011380.1 vs. TrEMBL
Match: M5X5M3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008067mg PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 5.9e-105
Identity = 212/346 (61.27%), Postives = 257/346 (74.28%), Query Frame = 1


Query: 4   ALIAGLSSTLKLPLLTAISSSPLNFRPKSQNVQFCSSPCKIHTIWNKPTRNCNVLSHNLS 63
           AL A   STL+L +    S SPL+ RP+ Q +QF SS  K+  +      N    S    
Sbjct: 7   ALSAPSPSTLRLKIT---SFSPLSIRPRKQTIQFRSST-KVQILNPIQAHNFPGFSGKAI 66

Query: 64  GFLISRSLGPFTVSA---GAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFVALAFI 123
           GFL  R L    VSA   G  E + +   E TMPERFRYLTKEAPDPPVRWP+FVAL F+
Sbjct: 67  GFLFERRLR-VRVSAKSDGVDEAEEETGGESTMPERFRYLTKEAPDPPVRWPWFVALVFL 126

Query: 124 LYAWKAVFFELGNWRKAVLCIFNFVGYILKGALALILYVIGDPITSMIRGIETTFYTIRS 183
           +YAW+AV  EL NWRKA L +  FVGY+LK  LALI + +GDPIT +IR IETT YT+RS
Sbjct: 127 IYAWRAVLLELANWRKAALAVVRFVGYLLKLILALIFHFLGDPITFIIRFIETTIYTLRS 186

Query: 184 FYSSVVAYAPVPELTTLIILASTVVAISEASVPDSVSTQPYLLTLSGLASYAAVRAYISE 243
           FYS +VAYAP+PELTT+I+LASTV+AI+EA VP+S++ QP+LLT SG+  YAAV  YISE
Sbjct: 187 FYSGIVAYAPIPELTTVIMLASTVLAIAEAVVPNSINCQPFLLTASGVVGYAAVTGYISE 246

Query: 244 PFFWTILLGVYSFSKFVKKRDDVTSALPAAAVFAAIGEPWVRILAMGSFMGLAIWHHWKK 303
           PFFWTIL+G+Y +S+FVKKRDDVTSALPAAAV AA+GEP++R+L + S++ LAI HH KK
Sbjct: 247 PFFWTILMGLYGYSRFVKKRDDVTSALPAAAVLAAVGEPYIRVLVISSYLALAILHHSKK 306

Query: 304 VSQGKEREEGVYERDVPVPLLGAALAIGIHAAAKWAGYRHLTWMIV 347
           +S+ KE E  V  R +P+PLLG ALAIGIH AAKWAGYRHLTWMIV
Sbjct: 307 LSERKE-EIVVTNRKLPMPLLGVALAIGIHLAAKWAGYRHLTWMIV 346

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BLAST of CmoCh15G011380.1 vs. TrEMBL
Match: A0A0D2VAK8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G073800 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 8.8e-101
Identity = 187/269 (69.52%), Postives = 222/269 (82.53%), Query Frame = 1


Query: 79  GAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFVALAFILYAWKAVFFELGNWRKAV 138
           G  E +   R E TMPERFRYLTKEAPDPPVRWPFFVA+AF+LYAW+AV  EL NWR A 
Sbjct: 84  GVDEAERLARGESTMPERFRYLTKEAPDPPVRWPFFVAVAFLLYAWRAVLLELSNWRNAA 143

Query: 139 LCIFNFVGYILKGALALILYVIGDPITSMIRGIETTFYTIRSFYSSVVAYAPVPELTTLI 198
             +  FVGYILK ALALI Y IGDPITSMIR IET  Y++R+FYS +VAYAPV ELT +I
Sbjct: 144 FSVVRFVGYILKLALALIFYFIGDPITSMIRCIETLIYSVRAFYSGIVAYAPVKELTVII 203

Query: 199 ILASTVVAISEASVPDSVSTQPYLLTLSGLASYAAVRAYISEPFFWTILLGVYSFSKFVK 258
           +LAS V+AI+EA+VP+S+S QPY+LT+SGL  YAAV  YISEP +WT+LLG+YSFS+ +K
Sbjct: 204 VLASAVLAIAEATVPNSISCQPYMLTMSGLIGYAAVTGYISEPLYWTLLLGLYSFSRVIK 263

Query: 259 KRDDVTSALPAAAVFAAIGEPWVRILAMGSFMGLAIWHHWKKVSQGKEREEGV-YERDVP 318
           KRDDVTSALP AAV AAIGEPWVRIL + S++ LAI++H KK+S+G+E  EG+  ER +P
Sbjct: 264 KRDDVTSALPVAAVMAAIGEPWVRILVITSYLALAIFNHSKKLSEGREETEGIAMERRLP 323

Query: 319 VPLLGAALAIGIHAAAKWAGYRHLTWMIV 347
           +PLLGAALAIGI+ AAKW GYRHLTWMIV
Sbjct: 324 MPLLGAALAIGINLAAKWVGYRHLTWMIV 352

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BLAST of CmoCh15G011380.1 vs. TrEMBL
Match: W9R094_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_022189 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 3.3e-100
Identity = 194/333 (58.26%), Postives = 247/333 (74.17%), Query Frame = 1


Query: 24  SPLNFRPKSQNVQFCSSPCKIHTIWNKPTRNCNVLSHNLSGFLISRSLGPFTVSAGAV-- 83
           SP+  R +S+ V F SSP K+ +       N +  S      L  R    F V   A   
Sbjct: 24  SPITTRFRSRFVTFSSSPTKLQSFNPLSADNLDGFSGKRPELLFGRK---FWVCLAAKND 83

Query: 84  --------EPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFVALAFILYAWKAVFFELGN 143
                   E + + R E T+PERFRYLT+EAPD P+RWP+FVA+AF++YAW+ V FEL N
Sbjct: 84  DKGDEIDEEGEKEARGESTLPERFRYLTEEAPDLPLRWPWFVAVAFLIYAWRTVLFELYN 143

Query: 144 WRKAVLCIFNFVGYILKGALALILYVIGDPITSMIRGIETTFYTIRSFYSSVVAYAPVPE 203
           W+KA + I  F GY+LK  LAL+++ IGDPITS+IR +ET  YT+R++YS +VAYAPVPE
Sbjct: 144 WKKAAIAIVRFAGYLLKLLLALMIHFIGDPITSLIRCVETALYTVRAYYSGIVAYAPVPE 203

Query: 204 LTTLIILASTVVAISEASVPDSVSTQPYLLTLSGLASYAAVRAYISEPFFWTILLGVYSF 263
           LTT+IIL+S V+AI+EA+VPDSVS+QP++LT+SGL  YAAVR YISEPFFWT+L+G+Y+F
Sbjct: 204 LTTIIILSSAVLAIAEATVPDSVSSQPHILTISGLIGYAAVRGYISEPFFWTLLVGLYTF 263

Query: 264 SKFVKKRDDVTSALPAAAVFAAIGEPWVRILAMGSFMGLAIWHHWKKVSQGKEREEGVYE 323
           S+ VKKRDDV++ALP AAV AAIGEPWVR+LAM S++ LAI HH KK+ +GKE+E  V  
Sbjct: 264 SRLVKKRDDVSAALPVAAVLAAIGEPWVRVLAMASYLALAISHHSKKLREGKEKEV-VAA 323

Query: 324 RDVPVPLLGAALAIGIHAAAKWAGYRHLTWMIV 347
           R +P+PLLG ALAIGI  AAKWAGYRHLTWM+V
Sbjct: 324 RKLPLPLLGVALAIGIRIAAKWAGYRHLTWMVV 352

[Close]

BLAST of CmoCh15G011380.1 vs. TrEMBL
Match: A0A0B0P998_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_25029 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 3.3e-100
Identity = 193/304 (63.49%), Postives = 234/304 (76.97%), Query Frame = 1


Query: 50  KPTRNCNVLSHNLSGFLISR------SLGPFTVSAGAVEPQNDDREEGTMPERFRYLTKE 109
           +P  N  +LS    G  ++R      + G      G  E +   R E TMPERFRYLTKE
Sbjct: 49  RPAPNFLLLSGKRLGLSLNRKSKFYANAGNGGEDGGVDEAERLARGESTMPERFRYLTKE 108

Query: 110 APDPPVRWPFFVALAFILYAWKAVFFELGNWRKAVLCIFNFVGYILKGALALILYVIGDP 169
           APDPPVRWPFFVA+AF+LYAW+AV  EL NWR A   +  FVGYILK ALALI Y IGDP
Sbjct: 109 APDPPVRWPFFVAVAFLLYAWRAVLLELSNWRNAAFGVVRFVGYILKLALALIFYFIGDP 168

Query: 170 ITSMIRGIETTFYTIRSFYSSVVAYAPVPELTTLIILASTVVAISEASVPDSVSTQPYLL 229
           ITSMIR IET  Y++R+FYS +VAYAPV ELT +I+LAS V+AI+EA+VP+S+S QPY+L
Sbjct: 169 ITSMIRCIETLIYSVRAFYSGIVAYAPVKELTVIIVLASAVLAIAEATVPNSISCQPYML 228

Query: 230 TLSGLASYAAVRAYISEPFFWTILLGVYSFSKFVKKRDDVTSALPAAAVFAAIGEPWVRI 289
           T+SGL  YAAV  YISEP +WT+LLG+YSFS+ +KKRDDVTSALP AAV AAIGEPWVRI
Sbjct: 229 TISGLIGYAAVTGYISEPLYWTLLLGLYSFSRVIKKRDDVTSALPVAAVMAAIGEPWVRI 288

Query: 290 LAMGSFMGLAIWHHWKKVSQGKEREEGV-YERDVPVPLLGAALAIGIHAAAKWAGYRHLT 347
           L + S++ LAI++H KK+S+ +E+ EG+  ER +P+PLLGAALAIGI+ AAKW GYRHLT
Sbjct: 289 LVITSYLALAIFNHSKKLSEVREQTEGIAMERRLPMPLLGAALAIGINLAAKWVGYRHLT 348

[Close]

BLAST of CmoCh15G011380.1 vs. TAIR10
Match: AT4G28210.1 (AT4G28210.1 embryo defective 1923)

HSP 1 Score: 334.7 bits (857), Expect = 6.6e-92
Identity = 161/259 (62.16%), Postives = 206/259 (79.54%), Query Frame = 1


Query: 88  REEGTMPERFRYLTKEAPDPPVRWPFFVALAFILYAWKAVFFELGNWRKAVLCIFNFVGY 147
           R E TMP+RFRYLTKEAPD P+ WP+FVAL F++YAW+AV FEL NWRKA   I  FVG 
Sbjct: 92  RRESTMPDRFRYLTKEAPDSPIIWPWFVALGFLVYAWRAVLFELSNWRKAAFAILAFVGD 151

Query: 148 ILKGALALILYVIGDPITSMIRGIETTFYTIRSFYSSVVAYAPVPELTTLIILASTVVAI 207
           + K ALAL+ + IGDPITS+I  +ET  Y++R+FYS +VAY PV ELTT+I+LAS+V+AI
Sbjct: 152 LSKFALALVFHFIGDPITSLISLVETAMYSVRAFYSGIVAYTPVRELTTVILLASSVLAI 211

Query: 208 SEASVPDSVSTQPYLLTLSGLASYAAVRAYISEPFFWTILLGVYSFSKFVKKRDDVTSAL 267
            EA  P+S+S QPY++T++GL  YAAV++YISEPFFWT+LLG+Y +S+ +KKRDDVTSAL
Sbjct: 212 GEAVAPESISKQPYVVTIAGLVGYAAVQSYISEPFFWTVLLGLYGYSRLIKKRDDVTSAL 271

Query: 268 PAAAVFAAIGEPWVRILAMGSFMGLAIWHHWKKVSQGKEREEGVYERDVPVPLLGAALAI 327
           P+AAV A +GEPWVR++A+  ++ LA++H+  K S   E E  +  R  P+PLL AALAI
Sbjct: 272 PSAAVLAGVGEPWVRVVAITGYLALAMYHNSTKTS--SEEESQILRRAPPMPLLAAALAI 331

Query: 328 GIHAAAKWAGYRHLTWMIV 347
           G+  AAKWAGYRHLTWMIV
Sbjct: 332 GVRLAAKWAGYRHLTWMIV 348

[Close]

BLAST of CmoCh15G011380.1 vs. NCBI nr
Match: gi|659074285|ref|XP_008437523.1| (PREDICTED: uncharacterized protein LOC103482911 [Cucumis melo])

HSP 1 Score: 537.0 bits (1382), Expect = 2.5e-149
Identity = 275/349 (78.80%), Postives = 302/349 (86.53%), Query Frame = 1


Query: 1   MATALIAGLSSTLKLPLLTAISSSPLNFRPKSQNVQFCSSPCKIHTIWNKPTRNCNVLSH 60
           MAT+LIA LSS LKLP+L+AISSSP  FR ++Q V F +SP KI T+W  PTRNCNVLSH
Sbjct: 1   MATSLIAALSSNLKLPILSAISSSPSTFRLQTQTVPFSNSPFKIQTLWLNPTRNCNVLSH 60

Query: 61  NLSGFLISRSLGPFTVSAGAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFVALAFI 120
           N SGFLISR L  FTV A   E Q+DDREE T+PERFRYLTKEAPDPPVRWPFFVAL F+
Sbjct: 61  NRSGFLISRKLESFTVFAADSEAQSDDREESTLPERFRYLTKEAPDPPVRWPFFVALPFL 120

Query: 121 LYAWKAVFFELGNWRKAVLCIFNFVGYILKGALALILYVIGDPITSMIRGIETTFYTIRS 180
           LYAW+AV FELGNWRK V+ +F+FV  ILKGALALILYVIGDPITSMIRGIET FYTIRS
Sbjct: 121 LYAWRAVLFELGNWRKIVVSLFSFVASILKGALALILYVIGDPITSMIRGIETAFYTIRS 180

Query: 181 FYSSVVAYAPVPELTTLIILASTVVAISEASVPDSVSTQPYLLTLSGLASYAAVRAYISE 240
           FYSS+VAYAP+PELTT+I+LAS ++AISEAS PDSVS+QPYLLTLSGLA Y AVR YISE
Sbjct: 181 FYSSIVAYAPIPELTTIIVLASAMLAISEASAPDSVSSQPYLLTLSGLAGYLAVRGYISE 240

Query: 241 PFFWTILLGVYSFSKFVKKRDDVTSALPAAAVFAAIGEPWVRILAMGSFMGLAIWHHWKK 300
           PFFWTILL VY +S FVKKR+DVTSALPAA VFAAIGEPWVRILAMGSF+ LAI HHWKK
Sbjct: 241 PFFWTILLCVYGYSSFVKKRNDVTSALPAAVVFAAIGEPWVRILAMGSFLALAITHHWKK 300

Query: 301 VSQGK---EREEGVYERDVPVPLLGAALAIGIHAAAKWAGYRHLTWMIV 347
           +SQGK   E E+GVY  DVP+PLLG ALAIGIHAAAKWAGYRHLTWMIV
Sbjct: 301 LSQGKKEDEDEKGVYRWDVPLPLLGVALAIGIHAAAKWAGYRHLTWMIV 349

[Close]

BLAST of CmoCh15G011380.1 vs. NCBI nr
Match: gi|449456317|ref|XP_004145896.1| (PREDICTED: uncharacterized protein LOC101214502 [Cucumis sativus])

HSP 1 Score: 513.5 bits (1321), Expect = 3.0e-142
Identity = 268/349 (76.79%), Postives = 294/349 (84.24%), Query Frame = 1


Query: 1   MATALIAGLSSTLKLPLLTAISSSPLNFRPKSQNVQFCSSPCKIHTIWNKPTRNCNVLSH 60
           MAT LIA LSS LKLPLL+AISSSP  FR ++Q V F +SP  I T+W  PTRNCNV+SH
Sbjct: 1   MATTLIASLSSNLKLPLLSAISSSPSTFRRQTQTVPFSNSP--IQTLWLNPTRNCNVISH 60

Query: 61  NLSGFLISRSLGPFTVSAGAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFVALAFI 120
           N SGFLISR L  FTV A   E Q+DDREE TMPERFRYL KE  DPPVRWPFFVAL F+
Sbjct: 61  NRSGFLISRKLESFTVFAADFEAQSDDREESTMPERFRYLAKEGSDPPVRWPFFVALPFL 120

Query: 121 LYAWKAVFFELGNWRKAVLCIFNFVGYILKGALALILYVIGDPITSMIRGIETTFYTIRS 180
           LYAW+AV FELGNWRK V+ +  FV  +LKGALALILYVIGDPITS+IRGIET FYTIRS
Sbjct: 121 LYAWRAVLFELGNWRKIVVNLVGFVVSLLKGALALILYVIGDPITSVIRGIETAFYTIRS 180

Query: 181 FYSSVVAYAPVPELTTLIILASTVVAISEASVPDSVSTQPYLLTLSGLASYAAVRAYISE 240
           F+SS+VAYAPV ELTT+IILASTV+AISEAS PDSV +QPYLLTLSGLA YAAVR YISE
Sbjct: 181 FHSSIVAYAPVSELTTIIILASTVLAISEASAPDSVRSQPYLLTLSGLAGYAAVRGYISE 240

Query: 241 PFFWTILLGVYSFSKFVKKRDDVTSALPAAAVFAAIGEPWVRILAMGSFMGLAIWHHWKK 300
           PFFWTILL VY +S FVKKR+DV+SALPAAAVFAAIGEPWVRILAMGSF+ LAI HHWK 
Sbjct: 241 PFFWTILLCVYGYSSFVKKRNDVSSALPAAAVFAAIGEPWVRILAMGSFLALAITHHWKN 300

Query: 301 VSQGK---EREEGVYERDVPVPLLGAALAIGIHAAAKWAGYRHLTWMIV 347
           +SQGK   E E+GVY  D+P+PLLG ALAIGIH AAKWAGYRHLTWMIV
Sbjct: 301 LSQGKKEDEDEKGVYRWDIPLPLLGVALAIGIHGAAKWAGYRHLTWMIV 347

[Close]

BLAST of CmoCh15G011380.1 vs. NCBI nr
Match: gi|595938078|ref|XP_007215629.1| (hypothetical protein PRUPE_ppa008067mg [Prunus persica])

HSP 1 Score: 389.0 bits (998), Expect = 8.4e-105
Identity = 212/346 (61.27%), Postives = 257/346 (74.28%), Query Frame = 1


Query: 4   ALIAGLSSTLKLPLLTAISSSPLNFRPKSQNVQFCSSPCKIHTIWNKPTRNCNVLSHNLS 63
           AL A   STL+L +    S SPL+ RP+ Q +QF SS  K+  +      N    S    
Sbjct: 7   ALSAPSPSTLRLKIT---SFSPLSIRPRKQTIQFRSST-KVQILNPIQAHNFPGFSGKAI 66

Query: 64  GFLISRSLGPFTVSA---GAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFVALAFI 123
           GFL  R L    VSA   G  E + +   E TMPERFRYLTKEAPDPPVRWP+FVAL F+
Sbjct: 67  GFLFERRLR-VRVSAKSDGVDEAEEETGGESTMPERFRYLTKEAPDPPVRWPWFVALVFL 126

Query: 124 LYAWKAVFFELGNWRKAVLCIFNFVGYILKGALALILYVIGDPITSMIRGIETTFYTIRS 183
           +YAW+AV  EL NWRKA L +  FVGY+LK  LALI + +GDPIT +IR IETT YT+RS
Sbjct: 127 IYAWRAVLLELANWRKAALAVVRFVGYLLKLILALIFHFLGDPITFIIRFIETTIYTLRS 186

Query: 184 FYSSVVAYAPVPELTTLIILASTVVAISEASVPDSVSTQPYLLTLSGLASYAAVRAYISE 243
           FYS +VAYAP+PELTT+I+LASTV+AI+EA VP+S++ QP+LLT SG+  YAAV  YISE
Sbjct: 187 FYSGIVAYAPIPELTTVIMLASTVLAIAEAVVPNSINCQPFLLTASGVVGYAAVTGYISE 246

Query: 244 PFFWTILLGVYSFSKFVKKRDDVTSALPAAAVFAAIGEPWVRILAMGSFMGLAIWHHWKK 303
           PFFWTIL+G+Y +S+FVKKRDDVTSALPAAAV AA+GEP++R+L + S++ LAI HH KK
Sbjct: 247 PFFWTILMGLYGYSRFVKKRDDVTSALPAAAVLAAVGEPYIRVLVISSYLALAILHHSKK 306

Query: 304 VSQGKEREEGVYERDVPVPLLGAALAIGIHAAAKWAGYRHLTWMIV 347
           +S+ KE E  V  R +P+PLLG ALAIGIH AAKWAGYRHLTWMIV
Sbjct: 307 LSERKE-EIVVTNRKLPMPLLGVALAIGIHLAAKWAGYRHLTWMIV 346

[Close]

BLAST of CmoCh15G011380.1 vs. NCBI nr
Match: gi|694332981|ref|XP_009357101.1| (PREDICTED: uncharacterized protein LOC103947859 isoform X2 [Pyrus x bretschneideri])

HSP 1 Score: 375.9 bits (964), Expect = 7.4e-101
Identity = 204/348 (58.62%), Postives = 251/348 (72.13%), Query Frame = 1


Query: 1   MATALIAGLSSTLKLPLLTAISSSPLNFRPKSQNVQFCSSPCKIHTIWNKPTRNCNVLSH 60
           M+T++    + T  +  L   S SP   RP  Q + F +S  K   +     +     S 
Sbjct: 1   MSTSIPTISAPTPSILRLKVASFSPPRIRPHIQTISFRNS-LKFQCLNPIQAQKFPGFSG 60

Query: 61  NLSGFLISRSLG--PFTVSAGAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFVALA 120
           N +GFL  R L       + G    +++ + E TMPERFRYLTKEAPDPPVRWP+FVAL 
Sbjct: 61  NTNGFLFDRKLRVCASAKNEGVDAAEDESKGESTMPERFRYLTKEAPDPPVRWPWFVALV 120

Query: 121 FILYAWKAVFFELGNWRKAVLCIFNFVGYILKGALALILYVIGDPITSMIRGIETTFYTI 180
           F++YAW+AV  EL NW+KA + +  FVGY+LK  LALI + IGDPITS+IR IETT Y I
Sbjct: 121 FLIYAWRAVLLELANWKKAAVGVVRFVGYLLKLILALIFHFIGDPITSVIRFIETTLYAI 180

Query: 181 RSFYSSVVAYAPVPELTTLIILASTVVAISEASVPDSVSTQPYLLTLSGLASYAAVRAYI 240
           RSFYS +VAYAP+PELTT+IILAS V+AI+EA VP++V+ QP+LLT SG+  YAAV  YI
Sbjct: 181 RSFYSGIVAYAPIPELTTVIILASIVLAIAEAVVPNAVNCQPFLLTASGVVGYAAVAGYI 240

Query: 241 SEPFFWTILLGVYSFSKFVKKRDDVTSALPAAAVFAAIGEPWVRILAMGSFMGLAIWHHW 300
           SEPFFWTIL+G Y +S+ VKKRDDVTSALPAAAV AAIGEPWVR+L + S++ LAI+HH 
Sbjct: 241 SEPFFWTILVGFYGYSRLVKKRDDVTSALPAAAVMAAIGEPWVRVLVIASYLALAIFHHS 300

Query: 301 KKVSQGKEREEGVYERDVPVPLLGAALAIGIHAAAKWAGYRHLTWMIV 347
           KKVS+ KE E  V +R +P+PLLGA LAIGI  AAKWAGYRHLTWMIV
Sbjct: 301 KKVSEKKE-EIVVTDRKLPMPLLGAGLAIGIRLAAKWAGYRHLTWMIV 346

[Close]

BLAST of CmoCh15G011380.1 vs. NCBI nr
Match: gi|823261914|ref|XP_012463694.1| (PREDICTED: uncharacterized protein LOC105783058 [Gossypium raimondii])

HSP 1 Score: 375.2 bits (962), Expect = 1.3e-100
Identity = 187/269 (69.52%), Postives = 222/269 (82.53%), Query Frame = 1


Query: 79  GAVEPQNDDREEGTMPERFRYLTKEAPDPPVRWPFFVALAFILYAWKAVFFELGNWRKAV 138
           G  E +   R E TMPERFRYLTKEAPDPPVRWPFFVA+AF+LYAW+AV  EL NWR A 
Sbjct: 84  GVDEAERLARGESTMPERFRYLTKEAPDPPVRWPFFVAVAFLLYAWRAVLLELSNWRNAA 143

Query: 139 LCIFNFVGYILKGALALILYVIGDPITSMIRGIETTFYTIRSFYSSVVAYAPVPELTTLI 198
             +  FVGYILK ALALI Y IGDPITSMIR IET  Y++R+FYS +VAYAPV ELT +I
Sbjct: 144 FSVVRFVGYILKLALALIFYFIGDPITSMIRCIETLIYSVRAFYSGIVAYAPVKELTVII 203

Query: 199 ILASTVVAISEASVPDSVSTQPYLLTLSGLASYAAVRAYISEPFFWTILLGVYSFSKFVK 258
           +LAS V+AI+EA+VP+S+S QPY+LT+SGL  YAAV  YISEP +WT+LLG+YSFS+ +K
Sbjct: 204 VLASAVLAIAEATVPNSISCQPYMLTMSGLIGYAAVTGYISEPLYWTLLLGLYSFSRVIK 263

Query: 259 KRDDVTSALPAAAVFAAIGEPWVRILAMGSFMGLAIWHHWKKVSQGKEREEGV-YERDVP 318
           KRDDVTSALP AAV AAIGEPWVRIL + S++ LAI++H KK+S+G+E  EG+  ER +P
Sbjct: 264 KRDDVTSALPVAAVMAAIGEPWVRILVITSYLALAIFNHSKKLSEGREETEGIAMERRLP 323

Query: 319 VPLLGAALAIGIHAAAKWAGYRHLTWMIV 347
           +PLLGAALAIGI+ AAKW GYRHLTWMIV
Sbjct: 324 MPLLGAALAIGINLAAKWVGYRHLTWMIV 352

The following BLAST results are available for this feature:

BLAST of CmoCh15G011380.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G011380.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KM42_CUCSA	2.1e-142	76.79	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141030 PE=4 SV=1	[more]
M5X5M3_PRUPE	5.9e-105	61.27	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008067mg PE=4 SV=1	[more]
A0A0D2VAK8_GOSRA	8.8e-101	69.52	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G073800 PE=4 SV=1	[more]
W9R094_9ROSA	3.3e-100	58.26	Uncharacterized protein OS=Morus notabilis GN=L484_022189 PE=4 SV=1	[more]
A0A0B0P998_GOSAR	3.3e-100	63.49	Uncharacterized protein OS=Gossypium arboreum GN=F383_25029 PE=4 SV=1	[more]

BLAST of CmoCh15G011380.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G28210.1	6.6e-92	62.16	embryo defective 1923	[more]

BLAST of CmoCh15G011380.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074285\|ref\|XP_008437523.1\|	2.5e-149	78.80	PREDICTED: uncharacterized protein LOC103482911 [Cucumis melo]	[more]
gi\|449456317\|ref\|XP_004145896.1\|	3.0e-142	76.79	PREDICTED: uncharacterized protein LOC101214502 [Cucumis sativus]	[more]
gi\|595938078\|ref\|XP_007215629.1\|	8.4e-105	61.27	hypothetical protein PRUPE_ppa008067mg [Prunus persica]	[more]
gi\|694332981\|ref\|XP_009357101.1\|	7.4e-101	58.62	PREDICTED: uncharacterized protein LOC103947859 isoform X2 [Pyrus x bretschneide...	[more]
gi\|823261914\|ref\|XP_012463694.1\|	1.3e-100	69.52	PREDICTED: uncharacterized protein LOC105783058 [Gossypium raimondii]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071840	cellular component organization or biogenesis
biological_process	GO:0034660	ncRNA metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh15G011380	CmoCh15G011380	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh15G011380.1	CmoCh15G011380.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G011380.1.exon.2	CmoCh15G011380.1.exon.2	exon
CmoCh15G011380.1.exon.1	CmoCh15G011380.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G011380.1.five_prime_UTR.1	CmoCh15G011380.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G011380.1.CDS.1	CmoCh15G011380.1.CDS.1	CDS
CmoCh15G011380.1.CDS.2	CmoCh15G011380.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G011380.1.three_prime_UTR.1	CmoCh15G011380.1.three_prime_UTR.1	three_prime_UTR