CmoCh15G000280.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G000280.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	BnaA02g15650D protein
Location	Cmo_Chr15 : 206448 .. 206888 (+)
Sequence length	441

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTCCAGAAGACTTCAGCTTCCAACCCATCAATGGCGGCACCACCCCCATTACTGGATCACCTCCCCTATGGGGCCTGCCACAAAAACCAATGGGCCGCCATGAGAAAGAAGATGGTGGCTGTAGAAATGTTGGCTCTTCGGAAAAAAGAAGGAATGATAGCGATGAGGAAGAAGATGAGAAGATGGATGTGCTGTGGGAAGACTTCAATGAAGAATTGCTCAAGAATTTGAGTTCCAGATATGGGTCTGGAAGGTTGCCGGAACTGGAATACTCGGAGTCGAAGGAAGCAAAGAAAGACGGCGGAGGGCGCGGCGGCAGTAGTGGGGCACTGCTGTCGGCGAGGATGGCGGGTGTGGTAGTGATGATGAAGGTGCTGAAGAAGATTCTGTTTCTGCATAGCTTTCGCAGGAAGCTCAAAGCTCGGACGTCGTGA

mRNA sequence

ATGGAAGCTCCAGAAGACTTCAGCTTCCAACCCATCAATGGCGGCACCACCCCCATTACTGGATCACCTCCCCTATGGGGCCTGCCACAAAAACCAATGGGCCGCCATGAGAAAGAAGATGGTGGCTGTAGAAATGTTGGCTCTTCGGAAAAAAGAAGGAATGATAGCGATGAGGAAGAAGATGAGAAGATGGATGTGCTGTGGGAAGACTTCAATGAAGAATTGCTCAAGAATTTGAGTTCCAGATATGGGTCTGGAAGGTTGCCGGAACTGGAATACTCGGAGTCGAAGGAAGCAAAGAAAGACGGCGGAGGGCGCGGCGGCAGTAGTGGGGCACTGCTGTCGGCGAGGATGGCGGGTGTGGTAGTGATGATGAAGGTGCTGAAGAAGATTCTGTTTCTGCATAGCTTTCGCAGGAAGCTCAAAGCTCGGACGTCGTGA

Coding sequence (CDS)

ATGGAAGCTCCAGAAGACTTCAGCTTCCAACCCATCAATGGCGGCACCACCCCCATTACTGGATCACCTCCCCTATGGGGCCTGCCACAAAAACCAATGGGCCGCCATGAGAAAGAAGATGGTGGCTGTAGAAATGTTGGCTCTTCGGAAAAAAGAAGGAATGATAGCGATGAGGAAGAAGATGAGAAGATGGATGTGCTGTGGGAAGACTTCAATGAAGAATTGCTCAAGAATTTGAGTTCCAGATATGGGTCTGGAAGGTTGCCGGAACTGGAATACTCGGAGTCGAAGGAAGCAAAGAAAGACGGCGGAGGGCGCGGCGGCAGTAGTGGGGCACTGCTGTCGGCGAGGATGGCGGGTGTGGTAGTGATGATGAAGGTGCTGAAGAAGATTCTGTTTCTGCATAGCTTTCGCAGGAAGCTCAAAGCTCGGACGTCGTGA

Homology

[Close]

BLAST of CmoCh15G000280.1 vs. TrEMBL
Match: A0A0A0LQ09_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402070 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.3e-37
Identity = 103/167 (61.68%), Postives = 118/167 (70.66%), Query Frame = 1


Query: 1   MEAPEDFSFQPINGGTTPITGSPPLWGLPQKPMGRHEKEDGGCRNVG-SSEKRRN----- 60
           MEA E+FSFQPINGG+TPIT SPPL     + +  HEKED    NV  SSE R N     
Sbjct: 1   MEAQENFSFQPINGGSTPITESPPL---ASESIDHHEKEDQSDGNVDCSSEIRSNGCHRK 60

Query: 61  ----------------DSDEEEDEKMDVLWEDFNEELLKNLSSRYGSGRLPELEYSESKE 120
                           +SD+EEDEKMD+LWEDFNEELLKNLSSR+GS RLPEL+  ES+E
Sbjct: 61  SNSCSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPELDDLESEE 120

Query: 121 AKKDGGGRGGSSGALLSARMAGVVVMMKVLKKILFLHSFRRKLKART 146
           A +D    G SSGA+LSARMA VVV+MKVLKK+LFLH+FRRKLKART
Sbjct: 121 AMED----GSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKART 160

[Close]

BLAST of CmoCh15G000280.1 vs. TrEMBL
Match: A0A059BXS7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04128 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-06
Identity = 54/156 (34.62%), Postives = 76/156 (48.72%), Query Frame = 1


Query: 3   APEDFSFQPINGGTTPITGSPPLWGLPQKPM-------GRHEKEDGGCRNVGSSEKRRND 62
           A E FSF  I   +     SPPLW +   P             ++G    +   E     
Sbjct: 38  AEEGFSFPGIPDPSACSICSPPLWPVSPPPAPPLRDRSSSRGSDEGDLGEMADGEGGGLR 97

Query: 63  SDEEEDEKMDVLWEDFNEEL-----LKNLSSRYGSGRLPELEYSESKEAKKDGGGRGG-- 122
            +EEE+EKMD+LWEDFNEEL     L ++SS + S        + +  + ++  G GG  
Sbjct: 98  EEEEEEEKMDMLWEDFNEELPRSHGLPDVSSSWSS--------TSTSTSSREAAGVGGVE 157

Query: 123 ------SSGALLSARMA---GVVVMMKVLKKILFLH 136
                 + GAL+SA+ A   GVVV++KVLKK+  LH
Sbjct: 158 ARTVSRTKGALVSAKRAPQPGVVVLIKVLKKLFLLH 185

[Close]

BLAST of CmoCh15G000280.1 vs. NCBI nr
Match: gi|778674413|ref|XP_011650206.1| (PREDICTED: uncharacterized protein LOC105434762 [Cucumis sativus])

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-37
Identity = 103/167 (61.68%), Postives = 118/167 (70.66%), Query Frame = 1


Query: 1   MEAPEDFSFQPINGGTTPITGSPPLWGLPQKPMGRHEKEDGGCRNVG-SSEKRRN----- 60
           MEA E+FSFQPINGG+TPIT SPPL     + +  HEKED    NV  SSE R N     
Sbjct: 1   MEAQENFSFQPINGGSTPITESPPL---ASESIDHHEKEDQSDGNVDCSSEIRSNGCHRK 60

Query: 61  ----------------DSDEEEDEKMDVLWEDFNEELLKNLSSRYGSGRLPELEYSESKE 120
                           +SD+EEDEKMD+LWEDFNEELLKNLSSR+GS RLPEL+  ES+E
Sbjct: 61  SNSCSGDSRRTNEIAINSDDEEDEKMDMLWEDFNEELLKNLSSRFGSRRLPELDDLESEE 120

Query: 121 AKKDGGGRGGSSGALLSARMAGVVVMMKVLKKILFLHSFRRKLKART 146
           A +D    G SSGA+LSARMA VVV+MKVLKK+LFLH+FRRKLKART
Sbjct: 121 AMED----GSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKART 160

[Close]

BLAST of CmoCh15G000280.1 vs. NCBI nr
Match: gi|659082020|ref|XP_008441623.1| (PREDICTED: uncharacterized protein LOC103485703 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 4.1e-37
Identity = 101/167 (60.48%), Postives = 117/167 (70.06%), Query Frame = 1


Query: 1   MEAPEDFSFQPINGGTTPITGSPPLWGLPQKPMGRHEKED---------------GGCRN 60
           MEA E+F FQPING +TPIT SPPL     K +  HEKED               GG R 
Sbjct: 1   MEAQENFGFQPINGSSTPITESPPL---ASKSIDHHEKEDQSDGNIDCSSEIRSNGGHRK 60

Query: 61  VGS--SEKRRN-----DSDEEEDEKMDVLWEDFNEELLKNLSSRYGSGRLPELEYSESKE 120
           + S   + RR      DSD+EEDEKMD+LWEDFNEEL+KNLSSR+GS RLPEL+  ES+E
Sbjct: 61  INSCSGDSRRTNEIAIDSDDEEDEKMDMLWEDFNEELMKNLSSRFGSRRLPELDDLESEE 120

Query: 121 AKKDGGGRGGSSGALLSARMAGVVVMMKVLKKILFLHSFRRKLKART 146
           A +D    G SSGA+LSARMA VVV+MKVLKK+LFLH+FRRKLKART
Sbjct: 121 AMED----GSSSGAMLSARMASVVVIMKVLKKLLFLHNFRRKLKART 160

[Close]

BLAST of CmoCh15G000280.1 vs. NCBI nr
Match: gi|702381979|ref|XP_010063767.1| (PREDICTED: uncharacterized protein LOC104450776 [Eucalyptus grandis])

HSP 1 Score: 60.5 bits (145), Expect = 2.9e-06
Identity = 54/156 (34.62%), Postives = 76/156 (48.72%), Query Frame = 1


Query: 3   APEDFSFQPINGGTTPITGSPPLWGLPQKPM-------GRHEKEDGGCRNVGSSEKRRND 62
           A E FSF  I   +     SPPLW +   P             ++G    +   E     
Sbjct: 38  AEEGFSFPGIPDPSACSICSPPLWPVSPPPAPPLRDRSSSRGSDEGDLGEMADGEGGGLR 97

Query: 63  SDEEEDEKMDVLWEDFNEEL-----LKNLSSRYGSGRLPELEYSESKEAKKDGGGRGG-- 122
            +EEE+EKMD+LWEDFNEEL     L ++SS + S        + +  + ++  G GG  
Sbjct: 98  EEEEEEEKMDMLWEDFNEELPRSHGLPDVSSSWSS--------TSTSTSSREAAGVGGVE 157

Query: 123 ------SSGALLSARMA---GVVVMMKVLKKILFLH 136
                 + GAL+SA+ A   GVVV++KVLKK+  LH
Sbjct: 158 ARTVSRTKGALVSAKRAPQPGVVVLIKVLKKLFLLH 185

The following BLAST results are available for this feature:

BLAST of CmoCh15G000280.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G000280.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQ09_CUCSA	1.3e-37	61.68	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402070 PE=4 SV=1	[more]
A0A059BXS7_EUCGR	2.0e-06	34.62	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F04128 PE=4 SV=1	[more]

BLAST of CmoCh15G000280.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh15G000280.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674413\|ref\|XP_011650206.1\|	1.9e-37	61.68	PREDICTED: uncharacterized protein LOC105434762 [Cucumis sativus]	[more]
gi\|659082020\|ref\|XP_008441623.1\|	4.1e-37	60.48	PREDICTED: uncharacterized protein LOC103485703 [Cucumis melo]	[more]
gi\|702381979\|ref\|XP_010063767.1\|	2.9e-06	34.62	PREDICTED: uncharacterized protein LOC104450776 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh15G000280	CmoCh15G000280	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh15G000280.1	CmoCh15G000280.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G000280.1.exon.1	CmoCh15G000280.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh15G000280.1.CDS.1	CmoCh15G000280.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34666	FAMILY NOT NAMED	coord: 37..146 score: 1.1
None	No IPR available	PANTHER	PTHR34666:SF1	SUBFAMILY NOT NAMED	coord: 37..146 score: 1.1