CmoCh14G005700.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G005700.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Early nodulin-like protein 17
Location	Cmo_Chr14 : 2904600 .. 2905355 (-)
Sequence length	671

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGATCTATATACCAACCTCTTCTTTAATCTTTATAAGCATACTCCTCAGTCATGGATGCACACACTGAAATACAGAGCTATGCAGGTTCTGACAACAAGGGTCGGCGGCGTAGGGCTGCTGGTGGCTGCGGCGGTGGTTATGCTGACGGCAATGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAAGATGGGTTGGACGACCAATGTGAACTACACAATCTGGGCTGAGGGAAAACACTTCTATTACGATGACTGGCTCTGTAAGCACTTCAATTTATAGATCTGATGCGGATTTGTGTAGCTAATGAGTTGGTTTGTGGGTAATTTGGCGGTTGTTTGTGTTAGTTTTTGTGTACGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAAACAGAGTACGAGAATTGCAATTCCGATCAGCCACTCCATAATTTCACCACCGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGACCTTATTACTTCATTAGCGGTAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCCATGTCCGGCACCTGCCTCCGCCGCCCTCGGCCTCCCCCTTCAACGCTAAGAGCAGTGCTCTAAGATCTTCTTACATCGGCCATACCCCATTCGTCTTGACCGCTGTTTTCGCCATCGCCGCTCTCCGGGAAGCTTTCCGCCGATTCTGGTAGAGACCACTCTTACTGAGTTCACATTCAACTTACTACACTTTTGTCTTGCCAATTTGTG

mRNA sequence

GGATCTATATACCAACCTCTTCTTTAATCTTTATAAGCATACTCCTCAGTCATGGATGCACACACTGAAATACAGAGCTATGCAGGTTCTGACAACAAGGGTCGGCGGCGTAGGGCTGCTGGTGGCTGCGGCGGTGGTTATGCTGACGGCAATGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAAGATGGGTTGGACGACCAATGTGAACTACACAATCTGGGCTGAGGGAAAACACTTCTATTACGATGACTGGCTCTTTTTTGTGTACGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAAACAGAGTACGAGAATTGCAATTCCGATCAGCCACTCCATAATTTCACCACCGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGACCTTATTACTTCATTAGCGGTAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCCATGTCCGGCACCTGCCTCCGCCGCCCTCGGCCTCCCCCTTCAACGCTAAGAGCAGTGCTCTAAGATCTTCTTACATCGGCCATACCCCATTCGTCTTGACCGCTGTTTTCGCCATCGCCGCTCTCCGGGAAGCTTTCCGCCGATTCTGGTAGAGACCACTCTTACTGAGTTCACATTCAACTTACTACACTTTTGTCTTGCCAATTTGTG

Coding sequence (CDS)

ATGCACACACTGAAATACAGAGCTATGCAGGTTCTGACAACAAGGGTCGGCGGCGTAGGGCTGCTGGTGGCTGCGGCGGTGGTTATGCTGACGGCAATGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAAGATGGGTTGGACGACCAATGTGAACTACACAATCTGGGCTGAGGGAAAACACTTCTATTACGATGACTGGCTCTTTTTTGTGTACGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAAACAGAGTACGAGAATTGCAATTCCGATCAGCCACTCCATAATTTCACCACCGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGACCTTATTACTTCATTAGCGGTAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCCATGTCCGGCACCTGCCTCCGCCGCCCTCGGCCTCCCCCTTCAACGCTAAGAGCAGTGCTCTAAGATCTTCTTACATCGGCCATACCCCATTCGTCTTGACCGCTGTTTTCGCCATCGCCGCTCTCCGGGAAGCTTTCCGCCGATTCTGGTAG

Homology

[Close]

BLAST of CmoCh14G005700.1 vs. Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-42
Identity = 83/164 (50.61%), Postives = 110/164 (67.07%), Query Frame = 1


Query: 23  VAAAVVMLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRNQMNVL 82
           V  A +M   MP V+A ++TVG    W  N+NYTIWA+GKHFY  DWL+FV+DRNQ N+L
Sbjct: 11  VVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNIL 70

Query: 83  EVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVRHLPP 142
           EVNKT+YE C +D P+ N+T GAGRD+V LN T+ YY + GKG CYGGMKL++ V  LPP
Sbjct: 71  EVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPP 130

Query: 143 PPSASPFNAKSSALRSSYIGHTPFVL-TAVFAIAALREAFRRFW 186
           PP ++P   K+    S   G   F++  ++FA  A+ +   R W
Sbjct: 131 PPKSAP--VKNIGSVSMVTGLAQFMIPVSLFAFPAMWDVISRMW 172

[Close]

BLAST of CmoCh14G005700.1 vs. Swiss-Prot
Match: BCB3_ARATH (Uclacyanin-3 OS=Arabidopsis thaliana GN=UCC3 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.0e-13
Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = 1


Query: 19  VGLLVAAAVVM-LTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRN 78
           +G  VAAA+++ L A+P V A  + VG   GWT+N++YT+W  GK F   D L FVY  +
Sbjct: 1   MGSTVAAALLLFLAAVPAVFAATFKVGDISGWTSNLDYTVWLTGKTFRVGDTLEFVYGLS 60

Query: 79  QMNVLEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGK-GFCYGGMKLAIH 138
             +V  V+K  Y+NC+S     NF  G  +  + L      +F+    G C  GMKLA+ 
Sbjct: 61  H-SVSVVDKAGYDNCDSSGATQNFADGDTK--IDLTTVGTMHFLCPTFGHCKNGMKLAVP 120

Query: 139 VRHLPPPPSASPFNAKSSALRSSYIGHTP 166
           V    P PS +P +  S+    S    TP
Sbjct: 121 VLAAAPSPS-TPSSPPSTPSTPSSPPSTP 145

[Close]

BLAST of CmoCh14G005700.1 vs. Swiss-Prot
Match: ENL2_ARATH (Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.2e-10
Identity = 44/138 (31.88%), Postives = 68/138 (49.28%), Query Frame = 1


Query: 37  SATRWTVGGKMGWTTNV--NYTIWAEGKHFYYDDWLFFVYDRNQMNVLEVNKTEYENCNS 96
           +A ++ VGG   W TN   NY  W+    F   D L+F Y +   +VLEVNK +Y+ CN+
Sbjct: 27  NARKFNVGGSGAWVTNPPENYESWSGKNRFLVHDTLYFSYAKGADSVLEVNKADYDACNT 86

Query: 97  DQPLHNFTTGAGRDVVHLNVTRPYYFISG-KGFCYGGMKLAIHV--RHLP----PPPSAS 156
             P+     G     + L+   P+YFISG +  C  G KL + V    +P     P +A+
Sbjct: 87  KNPIKRVDDGDSE--ISLDRYGPFYFISGNEDNCKKGQKLNVVVISARIPSTAQSPHAAA 146

Query: 157 PFNAKSSALRSSYIGHTP 166
           P ++   ++      H+P
Sbjct: 147 PGSSTPGSMTPPGGAHSP 162

[Close]

BLAST of CmoCh14G005700.1 vs. Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 5.5e-10
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1


Query: 38  ATRWTVGGKMGWTTNV--NYTIWAEGKHFYYDDWLFFVYDRNQMNVLEVNKTEYENCNSD 97
           AT   VG   GWTT V  +Y  WA    F+  D L F Y+    NVL+V++ ++++CNS 
Sbjct: 1   ATVHKVGDSTGWTTLVPYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSS 60

Query: 98  QPLHNFTTGAGRDVVHLNVTRPYYFISG-KGFCYGGMKLAIHV 138
            P  ++T+GA  D + L     +YF+ G  G C  G K+ I V
Sbjct: 61  SPAASYTSGA--DSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 101

[Close]

BLAST of CmoCh14G005700.1 vs. Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.1e-10
Identity = 47/139 (33.81%), Postives = 64/139 (46.04%), Query Frame = 1


Query: 32  AMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRNQMNVLEVNKTEYEN 91
           A+P + AT +TVG   GW    +Y+ WA  K F   D L F Y      V EV +++Y++
Sbjct: 19  ALPSL-ATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKS 78

Query: 92  CNSDQPLHNFTTGAGRDVVHLNVTRPYYFISG-KGFCYGGMKLAIHVRHLPPPPSASPFN 151
           C S   +   +TGA    + L     +YFI G  G   GGMKL+I V+      +A    
Sbjct: 79  CTSGNSISTDSTGA--TTIPLKKAGKHYFICGVPGHSTGGMKLSIKVKASSGSSAAPSAT 138

Query: 152 AKSSALRSSYIGHTPFVLT 170
             SS   S     TP   T
Sbjct: 139 PSSSGKGSPSSDDTPAATT 154

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BLAST of CmoCh14G005700.1 vs. TrEMBL
Match: A0A0A0LC11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 1.4e-81
Identity = 149/179 (83.24%), Postives = 159/179 (88.83%), Query Frame = 1


Query: 9   MQVLTTRVGGVGLLVAAA--VVMLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYY 68
           M+VL TRVGG GLLVA A  V++L A+PEVSATRWTVGG MGW TNVNYT WA+GKHFYY
Sbjct: 1   MEVLRTRVGGSGLLVAVAAVVILLAAVPEVSATRWTVGGNMGWNTNVNYTTWAQGKHFYY 60

Query: 69  DDWLFFVYDRNQMNVLEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGF 128
           DDWLFFVYDRNQMNVLEVNKT+YENC SD PLHNFTTGAGRDVVHLNVTRPYYFISGKGF
Sbjct: 61  DDWLFFVYDRNQMNVLEVNKTDYENCISDHPLHNFTTGAGRDVVHLNVTRPYYFISGKGF 120

Query: 129 CYGGMKLAIHVRHLPPPPSASPFNAKSSALRSSYIGHTPFVLTAVFAIAALREAFRRFW 186
           C+GGMKLAIHV HLPPPPS+SP N KSSALRS+  GHTPFVLTAVFAIAA+ E F R W
Sbjct: 121 CFGGMKLAIHVEHLPPPPSSSPLNEKSSALRSTNTGHTPFVLTAVFAIAAVLEVFTRVW 179

[Close]

BLAST of CmoCh14G005700.1 vs. TrEMBL
Match: W9QQU4_9ROSA (Lamin-like protein OS=Morus notabilis GN=L484_020958 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.3e-62
Identity = 124/165 (75.15%), Postives = 134/165 (81.21%), Query Frame = 1


Query: 22  LVAAAVVMLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRNQMNV 81
           LV  A+ +L  +PEVSATR+TVGG  GWTTNVNYTIWA+GKHFY DDWLFFVYDRNQMN+
Sbjct: 19  LVLFALAILVTVPEVSATRYTVGGNQGWTTNVNYTIWAQGKHFYKDDWLFFVYDRNQMNI 78

Query: 82  LEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVRHLP 141
           LEVNKT+YE CN+D PLHN+T GAGRDVV LNVTR YYFISGKGFCYGGMKLAI V   P
Sbjct: 79  LEVNKTDYEACNADHPLHNWTRGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAIRVETPP 138

Query: 142 PPPSASPFNAKSSALRS-SYIGHTPFVLTAVFAIAALREAFRRFW 186
           PPPSASP N KSSA RS SY G   F L AVFAI A  +AF RFW
Sbjct: 139 PPPSASPINEKSSAPRSTSYRG--KFFLPAVFAIGAAWDAFVRFW 181

[Close]

BLAST of CmoCh14G005700.1 vs. TrEMBL
Match: A9PAA9_POPTR (Plastocyanin-like domain-containing family protein OS=Populus trichocarpa GN=POPTR_0017s12460g PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.8e-61
Identity = 119/171 (69.59%), Postives = 138/171 (80.70%), Query Frame = 1


Query: 18  GVGLLVAAAVV---MLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVY 77
           G  ++VA AV+   M+  +PEVSATRWTVG  MGWT+NVNYTIWA+GKHFY  DWLFFVY
Sbjct: 8   GSPMMVALAVLVFAMVVMVPEVSATRWTVGSNMGWTSNVNYTIWAQGKHFYNGDWLFFVY 67

Query: 78  DRNQMNVLEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLA 137
           DRNQMN+LEVNKT+YE+CNSD PLHN+T GAGRDVV LNVTR YYFISGKGFCYGGMKLA
Sbjct: 68  DRNQMNILEVNKTDYESCNSDHPLHNWTRGAGRDVVPLNVTRNYYFISGKGFCYGGMKLA 127

Query: 138 IHVRHLPPPPSASPFNAKSSALRSSYIGHTPFVLTAVFAIAALREAFRRFW 186
           +HV + PPPP+ASP + KS +   S I  + +VL  VFAI AL +AF RFW
Sbjct: 128 VHVENPPPPPTASPLDEKSGS--PSSIFRSQYVLPTVFAIGALWDAFVRFW 176

[Close]

BLAST of CmoCh14G005700.1 vs. TrEMBL
Match: V4SAD5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012929mg PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 8.9e-60
Identity = 119/170 (70.00%), Postives = 131/170 (77.06%), Query Frame = 1


Query: 20  GLLVAAAVVMLTAM----PEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYD 79
           G+ VAAA V++ AM    PEV ATRW VG   GWT NVNYTIWA+ KHFY  DWLFFVYD
Sbjct: 4   GMTVAAAAVLVVAMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYD 63

Query: 80  RNQMNVLEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAI 139
           RNQMNVLEVNKT+YE+CNSD PLHN+TTGAGRDVV LNVTR YYFISGKGFCYGGMKLA+
Sbjct: 64  RNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAV 123

Query: 140 HVRHLPPPPSASPFNAKSSALRSSYIGHTPFVLTAVFAIAALREAFRRFW 186
            V + PPPPSASP   KS    + Y G    VL AVFAI A+ +AF RFW
Sbjct: 124 RVENPPPPPSASPIKEKSGTPSTLYRGQ--LVLPAVFAIGAVWDAFVRFW 171

[Close]

BLAST of CmoCh14G005700.1 vs. TrEMBL
Match: A0A067JTG9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19891 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.4e-59
Identity = 114/163 (69.94%), Postives = 130/163 (79.75%), Query Frame = 1


Query: 23  VAAAVVMLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRNQMNVL 82
           VA  ++M+  +PEVSATRWTVG  MGWTTNVNYTIWA+ KHFY  DWLFF YDRNQMNVL
Sbjct: 18  VAVVILMVFMVPEVSATRWTVGSNMGWTTNVNYTIWAQDKHFYNGDWLFFSYDRNQMNVL 77

Query: 83  EVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVRHLPP 142
           EVNKT+YE+CNSD PLHN+TTGAGRDVV LNVTR YYFISGKGFC+GGMKLA+HV + PP
Sbjct: 78  EVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRNYYFISGKGFCFGGMKLAVHVENPPP 137

Query: 143 PPSASPFNAKSSALRSSYIGHTPFVLTAVFAIAALREAFRRFW 186
           PP+A+P N  SSA  S  I    +VL A  AI A  +AF +FW
Sbjct: 138 PPTAAPVNENSSA--SYVILRGQYVLPAALAIGAFWDAFVQFW 178

[Close]

BLAST of CmoCh14G005700.1 vs. TAIR10
Match: AT5G15350.1 (AT5G15350.1 early nodulin-like protein 17)

HSP 1 Score: 174.5 bits (441), Expect = 6.1e-44
Identity = 83/164 (50.61%), Postives = 110/164 (67.07%), Query Frame = 1


Query: 23  VAAAVVMLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRNQMNVL 82
           V  A +M   MP V+A ++TVG    W  N+NYTIWA+GKHFY  DWL+FV+DRNQ N+L
Sbjct: 11  VVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQHNIL 70

Query: 83  EVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVRHLPP 142
           EVNKT+YE C +D P+ N+T GAGRD+V LN T+ YY + GKG CYGGMKL++ V  LPP
Sbjct: 71  EVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEKLPP 130

Query: 143 PPSASPFNAKSSALRSSYIGHTPFVL-TAVFAIAALREAFRRFW 186
           PP ++P   K+    S   G   F++  ++FA  A+ +   R W
Sbjct: 131 PPKSAP--VKNIGSVSMVTGLAQFMIPVSLFAFPAMWDVISRMW 172

[Close]

BLAST of CmoCh14G005700.1 vs. TAIR10
Match: AT3G01070.1 (AT3G01070.1 early nodulin-like protein 16)

HSP 1 Score: 170.2 bits (430), Expect = 1.2e-42
Identity = 91/165 (55.15%), Postives = 113/165 (68.48%), Query Frame = 1


Query: 19  VGLLVAAAVV-MLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRN 78
           V +LVA AV+  L A   V+A RWTVG    W  N+NYTIWA+ KHFY DDWL+FVY+RN
Sbjct: 4   VAVLVAGAVLAFLLAATNVTAKRWTVGDNKFWNPNINYTIWAQDKHFYLDDWLYFVYERN 63

Query: 79  QMNVLEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGK-GFCYGGMKLAIH 138
           Q NV+EVN+T Y +CN + P+ N++ GAGRD+VHLNVTR YY ISG  G CYGGMKLA+ 
Sbjct: 64  QYNVIEVNETNYISCNPNNPIANWSRGAGRDLVHLNVTRHYYLISGNGGGCYGGMKLAVL 123

Query: 139 VRHLPPPPSASPFNAKSSALRS---SYIGHTPFVLTAVFAIAALR 179
           V   PPPP+A+P   K+SA R+   S   +   +  AVFA    R
Sbjct: 124 VEKPPPPPAAAP--NKNSARRTFSVSGFAYQFLIPVAVFAAVGTR 166

[Close]

BLAST of CmoCh14G005700.1 vs. TAIR10
Match: AT4G12880.1 (AT4G12880.1 early nodulin-like protein 19)

HSP 1 Score: 145.2 bits (365), Expect = 4.0e-35
Identity = 65/126 (51.59%), Postives = 88/126 (69.84%), Query Frame = 1


Query: 23  VAAAVVMLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRNQMNVL 82
           V  A ++   +PEV+A ++ VG K  W  N+NYT+WA+GKHFY  DWL+FV+ R+Q N+L
Sbjct: 11  VVLAFLVAAPIPEVTAKKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLYFVFYRDQHNIL 70

Query: 83  EVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVRHLPP 142
           EVNK +YE C S++P+ N+T GAGRD+V L  TR YY + G+G C  GMKL + V   PP
Sbjct: 71  EVNKADYEKCISNRPIRNYTRGAGRDIVPLYETRRYYLLDGRGGCVQGMKLDVLVETPPP 130

Query: 143 PPSASP 149
           PP  +P
Sbjct: 131 PPPFTP 136

[Close]

BLAST of CmoCh14G005700.1 vs. TAIR10
Match: AT2G27035.1 (AT2G27035.1 early nodulin-like protein 20)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-24
Identity = 65/162 (40.12%), Postives = 93/162 (57.41%), Query Frame = 1


Query: 22  LVAAAVVMLTAMPEVSATRWTVGG-KMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRNQMN 81
           LV   V++L  + EV ++   VGG +  W ++VN++ WA  + FY  DWL+F ++R + N
Sbjct: 9   LVYVTVMILIIVVEVESSLHRVGGGRYTWNSDVNFSDWANHQRFYSGDWLYFGFNRTRHN 68

Query: 82  VLEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVRHL 141
           +L+VNK+ YE C  +  + N T G GRDV  L   +PYYFI G+G+C  GMKLAI V  L
Sbjct: 69  ILQVNKSSYEQCVDNDYIFNITRG-GRDVFQLLEPKPYYFICGRGYCLKGMKLAITV--L 128

Query: 142 PPPPSASPFNAKSSALRSSYIGHTPFVLTAVFAIAALREAFR 183
           P PP ++P N  S+         TP +       A L  AF+
Sbjct: 129 PQPPPSAPTNFTSTT--------TPLIPPNAITAAILIFAFK 159

[Close]

BLAST of CmoCh14G005700.1 vs. TAIR10
Match: AT3G60280.1 (AT3G60280.1 uclacyanin 3)

HSP 1 Score: 76.3 bits (186), Expect = 2.3e-14
Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = 1


Query: 19  VGLLVAAAVVM-LTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRN 78
           +G  VAAA+++ L A+P V A  + VG   GWT+N++YT+W  GK F   D L FVY  +
Sbjct: 1   MGSTVAAALLLFLAAVPAVFAATFKVGDISGWTSNLDYTVWLTGKTFRVGDTLEFVYGLS 60

Query: 79  QMNVLEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGK-GFCYGGMKLAIH 138
             +V  V+K  Y+NC+S     NF  G  +  + L      +F+    G C  GMKLA+ 
Sbjct: 61  H-SVSVVDKAGYDNCDSSGATQNFADGDTK--IDLTTVGTMHFLCPTFGHCKNGMKLAVP 120

Query: 139 VRHLPPPPSASPFNAKSSALRSSYIGHTP 166
           V    P PS +P +  S+    S    TP
Sbjct: 121 VLAAAPSPS-TPSSPPSTPSTPSSPPSTP 145

[Close]

BLAST of CmoCh14G005700.1 vs. NCBI nr
Match: gi|659085323|ref|XP_008443359.1| (PREDICTED: lamin-like protein [Cucumis melo])

HSP 1 Score: 314.7 bits (805), Expect = 1.1e-82
Identity = 152/180 (84.44%), Postives = 161/180 (89.44%), Query Frame = 1


Query: 9   MQVLTTRVGGVGLLVAAA---VVMLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFY 68
           M+VL TRVGG GLLVA A   VV+L ++PEVSATRWTVGG MGWTTNVNY+ WA+GKHFY
Sbjct: 1   MEVLRTRVGGSGLLVAVAAAVVVLLASVPEVSATRWTVGGNMGWTTNVNYSTWAQGKHFY 60

Query: 69  YDDWLFFVYDRNQMNVLEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKG 128
           YDDWLFFVYDRNQMNVLEVNKT+YENC SD PLHNFTTGAGRDVVHLNVTRPYYFISGKG
Sbjct: 61  YDDWLFFVYDRNQMNVLEVNKTDYENCISDHPLHNFTTGAGRDVVHLNVTRPYYFISGKG 120

Query: 129 FCYGGMKLAIHVRHLPPPPSASPFNAKSSALRSSYIGHTPFVLTAVFAIAALREAFRRFW 186
           FCYGGMKLAIHV HLPPPPSA P N KSSALRS+Y GHTPFVLTAVFAIAA+ EAF R W
Sbjct: 121 FCYGGMKLAIHVEHLPPPPSALPMNEKSSALRSTYTGHTPFVLTAVFAIAAVFEAFSRVW 180

[Close]

BLAST of CmoCh14G005700.1 vs. NCBI nr
Match: gi|449437808|ref|XP_004136682.1| (PREDICTED: lamin-like protein [Cucumis sativus])

HSP 1 Score: 310.5 bits (794), Expect = 2.0e-81
Identity = 149/179 (83.24%), Postives = 159/179 (88.83%), Query Frame = 1


Query: 9   MQVLTTRVGGVGLLVAAA--VVMLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYY 68
           M+VL TRVGG GLLVA A  V++L A+PEVSATRWTVGG MGW TNVNYT WA+GKHFYY
Sbjct: 1   MEVLRTRVGGSGLLVAVAAVVILLAAVPEVSATRWTVGGNMGWNTNVNYTTWAQGKHFYY 60

Query: 69  DDWLFFVYDRNQMNVLEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGF 128
           DDWLFFVYDRNQMNVLEVNKT+YENC SD PLHNFTTGAGRDVVHLNVTRPYYFISGKGF
Sbjct: 61  DDWLFFVYDRNQMNVLEVNKTDYENCISDHPLHNFTTGAGRDVVHLNVTRPYYFISGKGF 120

Query: 129 CYGGMKLAIHVRHLPPPPSASPFNAKSSALRSSYIGHTPFVLTAVFAIAALREAFRRFW 186
           C+GGMKLAIHV HLPPPPS+SP N KSSALRS+  GHTPFVLTAVFAIAA+ E F R W
Sbjct: 121 CFGGMKLAIHVEHLPPPPSSSPLNEKSSALRSTNTGHTPFVLTAVFAIAAVLEVFTRVW 179

[Close]

BLAST of CmoCh14G005700.1 vs. NCBI nr
Match: gi|703073526|ref|XP_010089568.1| (Lamin-like protein [Morus notabilis])

HSP 1 Score: 245.7 bits (626), Expect = 6.2e-62
Identity = 124/165 (75.15%), Postives = 134/165 (81.21%), Query Frame = 1


Query: 22  LVAAAVVMLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYDRNQMNV 81
           LV  A+ +L  +PEVSATR+TVGG  GWTTNVNYTIWA+GKHFY DDWLFFVYDRNQMN+
Sbjct: 19  LVLFALAILVTVPEVSATRYTVGGNQGWTTNVNYTIWAQGKHFYKDDWLFFVYDRNQMNI 78

Query: 82  LEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVRHLP 141
           LEVNKT+YE CN+D PLHN+T GAGRDVV LNVTR YYFISGKGFCYGGMKLAI V   P
Sbjct: 79  LEVNKTDYEACNADHPLHNWTRGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAIRVETPP 138

Query: 142 PPPSASPFNAKSSALRS-SYIGHTPFVLTAVFAIAALREAFRRFW 186
           PPPSASP N KSSA RS SY G   F L AVFAI A  +AF RFW
Sbjct: 139 PPPSASPINEKSSAPRSTSYRG--KFFLPAVFAIGAAWDAFVRFW 181

[Close]

BLAST of CmoCh14G005700.1 vs. NCBI nr
Match: gi|224141443|ref|XP_002324082.1| (plastocyanin-like domain-containing family protein [Populus trichocarpa])

HSP 1 Score: 243.0 bits (619), Expect = 4.0e-61
Identity = 119/171 (69.59%), Postives = 138/171 (80.70%), Query Frame = 1


Query: 18  GVGLLVAAAVV---MLTAMPEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVY 77
           G  ++VA AV+   M+  +PEVSATRWTVG  MGWT+NVNYTIWA+GKHFY  DWLFFVY
Sbjct: 8   GSPMMVALAVLVFAMVVMVPEVSATRWTVGSNMGWTSNVNYTIWAQGKHFYNGDWLFFVY 67

Query: 78  DRNQMNVLEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLA 137
           DRNQMN+LEVNKT+YE+CNSD PLHN+T GAGRDVV LNVTR YYFISGKGFCYGGMKLA
Sbjct: 68  DRNQMNILEVNKTDYESCNSDHPLHNWTRGAGRDVVPLNVTRNYYFISGKGFCYGGMKLA 127

Query: 138 IHVRHLPPPPSASPFNAKSSALRSSYIGHTPFVLTAVFAIAALREAFRRFW 186
           +HV + PPPP+ASP + KS +   S I  + +VL  VFAI AL +AF RFW
Sbjct: 128 VHVENPPPPPTASPLDEKSGS--PSSIFRSQYVLPTVFAIGALWDAFVRFW 176

[Close]

BLAST of CmoCh14G005700.1 vs. NCBI nr
Match: gi|568858355|ref|XP_006482719.1| (PREDICTED: lamin-like protein [Citrus sinensis])

HSP 1 Score: 239.2 bits (609), Expect = 5.8e-60
Identity = 120/170 (70.59%), Postives = 131/170 (77.06%), Query Frame = 1


Query: 20  GLLVAAAVVMLTAM----PEVSATRWTVGGKMGWTTNVNYTIWAEGKHFYYDDWLFFVYD 79
           G+ VAAA V+L AM    PEV ATRW VG   GWT NVNYTIWA+ KHFY  DWLFFVYD
Sbjct: 4   GMTVAAAAVLLVAMTILVPEVDATRWIVGANQGWTNNVNYTIWAKDKHFYNGDWLFFVYD 63

Query: 80  RNQMNVLEVNKTEYENCNSDQPLHNFTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAI 139
           RNQMNVLEVNKT+YE+CNSD PLHN+TTGAGRDVV LNVTR YYFISGKGFCYGGMKLA+
Sbjct: 64  RNQMNVLEVNKTDYESCNSDHPLHNWTTGAGRDVVPLNVTRHYYFISGKGFCYGGMKLAV 123

Query: 140 HVRHLPPPPSASPFNAKSSALRSSYIGHTPFVLTAVFAIAALREAFRRFW 186
            V + PPPPSASP   KS    + Y G    VL AVFAI A+ +AF RFW
Sbjct: 124 RVENPPPPPSASPIKEKSGTPSTLYRGQ--LVLPAVFAIGAVWDAFVRFW 171

The following BLAST results are available for this feature:

BLAST of CmoCh14G005700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LAML_ARATH	1.1e-42	50.61	Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1	[more]
BCB3_ARATH	4.0e-13	36.91	Uclacyanin-3 OS=Arabidopsis thaliana GN=UCC3 PE=2 SV=1	[more]
ENL2_ARATH	4.2e-10	31.88	Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1	[more]
MAVI_CUCPE	5.5e-10	37.86	Mavicyanin OS=Cucurbita pepo PE=1 SV=1	[more]
BCP_PEA	7.1e-10	33.81	Blue copper protein OS=Pisum sativum PE=2 SV=1	[more]

BLAST of CmoCh14G005700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC11_CUCSA	1.4e-81	83.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1	[more]
W9QQU4_9ROSA	4.3e-62	75.15	Lamin-like protein OS=Morus notabilis GN=L484_020958 PE=4 SV=1	[more]
A9PAA9_POPTR	2.8e-61	69.59	Plastocyanin-like domain-containing family protein OS=Populus trichocarpa GN=POP...	[more]
V4SAD5_9ROSI	8.9e-60	70.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012929mg PE=4 SV=1	[more]
A0A067JTG9_JATCU	3.4e-59	69.94	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19891 PE=4 SV=1	[more]

BLAST of CmoCh14G005700.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G15350.1	6.1e-44	50.61	early nodulin-like protein 17	[more]
AT3G01070.1	1.2e-42	55.15	early nodulin-like protein 16	[more]
AT4G12880.1	4.0e-35	51.59	early nodulin-like protein 19	[more]
AT2G27035.1	1.1e-24	40.12	early nodulin-like protein 20	[more]
AT3G60280.1	2.3e-14	36.91	uclacyanin 3	[more]

BLAST of CmoCh14G005700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085323\|ref\|XP_008443359.1\|	1.1e-82	84.44	PREDICTED: lamin-like protein [Cucumis melo]	[more]
gi\|449437808\|ref\|XP_004136682.1\|	2.0e-81	83.24	PREDICTED: lamin-like protein [Cucumis sativus]	[more]
gi\|703073526\|ref\|XP_010089568.1\|	6.2e-62	75.15	Lamin-like protein [Morus notabilis]	[more]
gi\|224141443\|ref\|XP_002324082.1\|	4.0e-61	69.59	plastocyanin-like domain-containing family protein [Populus trichocarpa]	[more]
gi\|568858355\|ref\|XP_006482719.1\|	5.8e-60	70.59	PREDICTED: lamin-like protein [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003245	Phytocyanin_dom
IPR008972	Cupredoxin

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G005700	CmoCh14G005700	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G005700.1	CmoCh14G005700.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G005700.1.three_prime_UTR.1	CmoCh14G005700.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G005700.1.CDS.2	CmoCh14G005700.1.CDS.2	CDS
CmoCh14G005700.1.CDS.1	CmoCh14G005700.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G005700.1.five_prime_UTR.1	CmoCh14G005700.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G005700.1.exon.2	CmoCh14G005700.1.exon.2	exon
CmoCh14G005700.1.exon.1	CmoCh14G005700.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PRODOM	PD003122		coord: 72..148 score: 6.0
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 49..131 score: 4.3
IPR003245	Phytocyanin domain	PROFILE	PS51485	PHYTOCYANIN	coord: 39..139 score: 34
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 38..143 score: 7.8
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 38..137 score: 9.18
None	No IPR available	PANTHER	PTHR33021	FAMILY NOT NAMED	coord: 14..185 score: 6.5
None	No IPR available	PANTHER	PTHR33021:SF63	LAMIN-LIKE PROTEIN	coord: 14..185 score: 6.5