CmoCh14G004970.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G004970.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transcription elongation factor-related family protein
Location	Cmo_Chr14 : 2463505 .. 2467541 (+)
Sequence length	2636

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAGAGGAGAGAGAGAGAGAGGGATTTATGTAGTCTTGGTTTGGATACCCCAAAATCTGTGCCCTTTTTGCAGCACCCAGTTTTATTGTAATCTCCAATTTGTAGAGAGAGAGAGAGAAACAAACAAACAAACAAAAAAACCCACAAATCCAATTCCAATTCCGAATCGAAATCAGTTCCATTGAAAGAGATTGAAGGATTGAATTTCTGTTCTTACTTTTCTCTTTCATTTTCCATTTTCCCCATATTTTTCTCCCCACTAGATTCCGGAACTTTTCCGAGATTAAAGAAGATAAAAGCAAAGCAACCAAGTTCATCTGTTACTCCCTTCGAATTTTCCAACAATCCATCAAAACAGCACTTGGGTGTTCATCAATCCCCTGTTTCTGTTCTGTTTCTGTTCCTGTTCTTGATCTGATCCTTGATTTTTCAACTCACTCTACACACATTAACCAACTCTTTGTTGGGTTATGAACGGATGAACTACGACTGTTAATCAGTTTGTTGCTAACCATTTTCTCTGGGAATCGGATTCTGGTGGTGTTTGATTAGTGTTTGAGAAGGGTTTTCTTGTTGGGTGTTTATCGTTTACGGATTTCCTTCCAAACCCACCTCGAATCAACTGGGTTTAACCCCAATTCTTTGTTAGGTTTTCGTTTCGACGGCGATGGAATTCCCACATCGATTCTGATTTTTCGTTTGTGTTCGATCGAGTTTTGTAGATTCCGATCATGGCCGCCAAATCTGGGTCGTTGGATTCGTGGAGGAATTACTTCCGGAATGCGAATTCGGATATCTTTAGCATAATCGATTACGCAATCTTGGTGGCGGCTTCTGATTGCCCTAAAGAGTTCAAGTTGAGGAGAGATCGAATAGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGCTGTTTTGGCTGCGATCGAGTGGAGCTAGCGGTGGTCGGCGACGACAGCGACGGCGGCGAAACGGGTTTCAAGAGCGATTTTGCTGGAGATGGGTGTGAGTTTGAAGGCGGTGGTAGCAAAGAAAGCAAGGTTTATAGCAGTAGAGATGATGCAGGGGAGATGAATTTCATTAGCTTTGGTGAAGCTGAAGCTGAAGCATTAACTGATGAAATTGAACAAGAATCTCAGATTGTTGAGGAGGTTTTGAGGATCAAAGAGATTCTTAATAACTTCGAAGAAGCGGTAATGATTTCTTTGAATGTTTTTTTTTTTCATTTTCTGGGCTGTTCTTGTCTGTCATGATGATGATTATTGTTCTGTTTGTTTGTGTGTTCTTGTGTGTTCTTGTGCAGTCTGATTCAGTGTTGTTTGATTCACTTAGAAGACTTGAATTGATGGCTTTATCAGTTGATTCACTGCAGGTGATTTGAATTCTTCTGTTTGTTCTTGTTTATGAGGAAAATCTGGATTCAAGTTTTGAGTGTCTTTTTTCTCTCTTTATCAGGCAACTGAGATTGGCAAGGCTGTTAATGGCCTCCGAAAGCACGGATCGAAGCGCATCCGCCATCTTGCTCGAGTTCTTATCTTGTACTAAATCTTTCCTTCGAAGTTCATCGAGTATATATAGATGATATGTGATGAATGTCCACATTTGTCTGCTATGTTCTATAGATCTTATTGATTTGATTTTGAGCTGATCTGTTGAGTTTTATATACGACTTGTTGCATAGAATCGACAAAGAACGATCACTTTCGACCGTTCATGTTCCATTGTTTTGTTTGTTGAGTAGTTCAAGAGCTTTTCGAGCTCGTTTACTGAGAGGGTTCTCTATCTGTAACAGCCCAAATCCACCGCTAGTAGATATTGTCTGCTAGGGAGAGGTTTCCACACCCTTAGAAAGGATGTTTCGTTCTCCTCCCTAACCGATGTGAGATCTCACAATCCACCTGCCTTCAAGGCCCAGCGGCCTCGCTGACACTCATTCCATTCTCTAATGGACGTGGGACCCTCAATCCACTCCCTTTAGGACCCAACGTACTTATTGACACACCGTCTTGTGTCCACTCTCTAGGGCTTAGCCACCTCACTGGCACATCGCCCAGTGTCTGGCTCGGATACCATTTGTGACAGCCTAAGTCCACTGCGAGTAGATATTGTTCTCTTTAAGCTTTCCCTTTCGGGCTTACCCTCAAGGTTTTTAAAACGTGCCGACTAGGGAGAGACTTTCATACCCTTAGAAAGGATGTTTTGTTCTCCTCACCAACCGATGTGGGATCTCGCACTATCTGTCATGTCATGTCTTGTCTTCGATAACGTTTGCACTCATATCTGTCATGTCTTCGATATCTGTTATTACCTTACTTTGTTTGAGAGTAAAAGATCTACCTTATGGGTTGCAGGGAGTGGAAACAAATGGTGGACGTGTGGGTAAAAGCCACCGCTGCGGTTCAAGGTACAGTTCGTTTACAAATCTTTTGGCTGTCGTCAACTTTTTCGAGTTCGTTATTGAGAAACGTTCTTATTTTTGTTGACAAACAGCTGCAGAAGTCACACCCGACTCGAAAAACAAGTCTGCTGCTGCAACAGAAGAAGAAGATGATTATGAAGAAGAAGGGCTTCCATCTCCTCCTTTAGACGAAGCTGCATTTTTTACGACGCAGCCGACATCCATGGAGCTCTCACAAGTATGATTCTATTTCCTTGCTTATTCTATAGAAACGTTATCTACTTTACGTTACATCGTTTCTGATCGACTGTATTTTACTTTCGGTTCCGTTCCGTTCCCTGCTGAAGTTCTTTGATGGCATGGACGATGATGGAAGTGAGTTCGTTACGCAATACCCTCTCTACAGTTTTTAGCTTCCCATTTCTTAGATTCACGATTACGAATCGGGATATATGTCGTTTCAGATCCTCGAAACAGCGGGGAAGTCGTCAAGAACCGTGATAATGTGAGAAAAACATCGAATGGCGATCCAAATTCTACGAGGTGTAAACAACAAACCGTTCGAGAGGTCGACGTGCCTGCTAAGGTTAATAAGAGTCAAATGAAGGAACAAGTTGTGAAGCCAAATTCTGGGCTTTTGAGGCCACAGAAGCTAAGCACAGAGCAGAAGAACACACAGCGCAAAATGGATAAGCCTACAATCCCAAAGAGGAGCCAGCAAGATGTAAGAACAAGAAGATCTGAAACTACTAGGTAATTCGGCTCGACGTTCGAACTTTTACCTGATTTGTTCGGTTTGTGTTTACCAGAACTTCAAGAGCTCGGACGAGGTTGCGGTTCAAGTGAAACTTGAAGCTACAAAGAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGGTATTTGTTTCGTTTTTCTGTTCGTGTTCTTATCGATTCTAATACCACTTTCATAGGGAATGTTAAGGTTTAGTAGTATCGAATCGGTTAAGCTAAATGTTTACGAGTTTCTCAGTTGATTCATGGTGTTAATTCAACAGCCAAGAAGCAGCGTACGATACAGGTTATGGAACTACACGATCTTCCCAAGCAGGGACTCGGCCATCGAAATCCACACATAAAATCTGGAGGATACCAGCGGCATTGGGCGAACGGTCGGCGTTAGGATCGTCGATGTTAAAAGGTAGAAGACTGATGGTTCCAAGAATCAGGTGGAAGGAAGATGGTTCCAGCTAAAGCTCCCTGGCAAACAGTGTCTGTCTTGACCGACTTGCTCGAAGGTAAACATCAAGAAACTTGGGTTCGGTTTCGGTCTGGCGTGCCGGAGAAGGCGGTCGAGATTGTAAGGAGAGTTGGAGCTTTATCCTGTTTACATAATTACTGTATAGAAGGCTTGATTTGATATCCTCTTCACTTCAGTGACTGTTTGTTACATTCAAGGAAGCCTTTCTTTCATATAATTTGGCACAAAAACAAGGTGCAGTCCCATAAACAGTGTAAAATCTGATCTGTATACTCCTTCTGATGATGAATGCTCATTGTTCTTATGGAATAATAGCTACTGATTCATTCAAATGCTCTTCTTTTTGTTCTAGACCTGTTTGTTCGAGACGGGTTCGTTGAGGGGATAGAAACATGTCC

mRNA sequence

GAGAGAGGAGAGAGAGAGAGAGGGATTTATGTAGTCTTGGTTTGGATACCCCAAAATCTGTGCCCTTTTTGCAGCACCCAGTTTTATTGTAATCTCCAATTTGTAGAGAGAGAGAGAGAAACAAACAAACAAACAAAAAAACCCACAAATCCAATTCCAATTCCGAATCGAAATCAGTTCCATTGAAAGAGATTGAAGGATTGAATTTCTGTTCTTACTTTTCTCTTTCATTTTCCATTTTCCCCATATTTTTCTCCCCACTAGATTCCGGAACTTTTCCGAGATTAAAGAAGATAAAAGCAAAGCAACCAAGTTCATCTGTTACTCCCTTCGAATTTTCCAACAATCCATCAAAACAGCACTTGGGTGTTCATCAATCCCCTGTTTCTGTTCTGTTTCTGTTCCTGTTCTTGATCTGATCCTTGATTTTTCAACTCACTCTACACACATTAACCAACTCTTTGTTGGGTTATGAACGGATGAACTACGACTGTTAATCAGTTTGTTGCTAACCATTTTCTCTGGGAATCGGATTCTGGTGGTGTTTGATTAGTGTTTGAGAAGGGTTTTCTTGTTGGGTGTTTATCGTTTACGGATTTCCTTCCAAACCCACCTCGAATCAACTGGGTTTAACCCCAATTCTTTGTTAGGTTTTCGTTTCGACGGCGATGGAATTCCCACATCGATTCTGATTTTTCGTTTGTGTTCGATCGAGTTTTGTAGATTCCGATCATGGCCGCCAAATCTGGGTCGTTGGATTCGTGGAGGAATTACTTCCGGAATGCGAATTCGGATATCTTTAGCATAATCGATTACGCAATCTTGGTGGCGGCTTCTGATTGCCCTAAAGAGTTCAAGTTGAGGAGAGATCGAATAGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGCTGTTTTGGCTGCGATCGAGTGGAGCTAGCGGTGGTCGGCGACGACAGCGACGGCGGCGAAACGGGTTTCAAGAGCGATTTTGCTGGAGATGGGTGTGAGTTTGAAGGCGGTGGTAGCAAAGAAAGCAAGGTTTATAGCAGTAGAGATGATGCAGGGGAGATGAATTTCATTAGCTTTGGTGAAGCTGAAGCTGAAGCATTAACTGATGAAATTGAACAAGAATCTCAGATTGTTGAGGAGGTTTTGAGGATCAAAGAGATTCTTAATAACTTCGAAGAAGCGTCTGATTCAGTGTTGTTTGATTCACTTAGAAGACTTGAATTGATGGCTTTATCAGTTGATTCACTGCAGGCAACTGAGATTGGCAAGGCTGTTAATGGCCTCCGAAAGCACGGATCGAAGCGCATCCGCCATCTTGCTCGAGTTCTTATCTTGGAGTGGAAACAAATGGTGGACGTGTGGGTAAAAGCCACCGCTGCGGTTCAAGCTGCAGAAGTCACACCCGACTCGAAAAACAAGTCTGCTGCTGCAACAGAAGAAGAAGATGATTATGAAGAAGAAGGGCTTCCATCTCCTCCTTTAGACGAAGCTGCATTTTTTACGACGCAGCCGACATCCATGGAGCTCTCACAAAAACGTTATCTACTTTACGTTACATCGTTTCTGATCGACTGTATTTTACTTTCGGTTCCGTTCCGTTCCCTGCTGAAGTTCTTTGATGGCATGGACGATGATGGAAATTCACGATTACGAATCGGGATATATGTCGTTTCAGATCCTCGAAACAGCGGGGAAGTCGTCAAGAACCGTGATAATGTGAGAAAAACATCGAATGGCGATCCAAATTCTACGAGGTGTAAACAACAAACCGTTCGAGAGGTCGACGTGCCTGCTAAGGTTAATAAGAGTCAAATGAAGGAACAAGTTGTGAAGCCAAATTCTGGGCTTTTGAGGCCACAGAAGCTAAGCACAGAGCAGAAGAACACACAGCGCAAAATGGATAAGCCTACAATCCCAAAGAGGAGCCAGCAAGATAACTTCAAGAGCTCGGACGAGGTTGCGGTTCAAGTGAAACTTGAAGCTACAAAGAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGCCAAGAAGCAGCGTACGATACAGGTTATGGAACTACACGATCTTCCCAAGCAGGGACTCGGCCATCGAAATCCACACATAAAATCTGGAGGATACCAGCGGCATTGGGCGAACGGTCGGCGTTAGGATCGTCGATGTTAAAAGGTAGAAGACTGATGGTTCCAAGAATCAGGTGGAAGGAAGATGGTTCCAGCTAAAGCTCCCTGGCAAACAGTGTCTGTCTTGACCGACTTGCTCGAAGGTAAACATCAAGAAACTTGGGTTCGGTTTCGGTCTGGCGTGCCGGAGAAGGCGGTCGAGATTGTAAGGAGAGTTGGAGCTTTATCCTGTTTACATAATTACTGTATAGAAGGCTTGATTTGATATCCTCTTCACTTCAGTGACTGTTTGTTACATTCAAGGAAGCCTTTCTTTCATATAATTTGGCACAAAAACAAGGTGCAGTCCCATAAACAGTGTAAAATCTGATCTGTATACTCCTTCTGATGATGAATGCTCATTGTTCTTATGGAATAATAGCTACTGATTCATTCAAATGCTCTTCTTTTTGTTCTAGACCTGTTTGTTCGAGACGGGTTCGTTGAGGGGATAGAAACATGTCC

Coding sequence (CDS)

ATGGCCGCCAAATCTGGGTCGTTGGATTCGTGGAGGAATTACTTCCGGAATGCGAATTCGGATATCTTTAGCATAATCGATTACGCAATCTTGGTGGCGGCTTCTGATTGCCCTAAAGAGTTCAAGTTGAGGAGAGATCGAATAGCAGAGCAGTTGTTCTCTTGCCGATTGACTCGCTGTTTTGGCTGCGATCGAGTGGAGCTAGCGGTGGTCGGCGACGACAGCGACGGCGGCGAAACGGGTTTCAAGAGCGATTTTGCTGGAGATGGGTGTGAGTTTGAAGGCGGTGGTAGCAAAGAAAGCAAGGTTTATAGCAGTAGAGATGATGCAGGGGAGATGAATTTCATTAGCTTTGGTGAAGCTGAAGCTGAAGCATTAACTGATGAAATTGAACAAGAATCTCAGATTGTTGAGGAGGTTTTGAGGATCAAAGAGATTCTTAATAACTTCGAAGAAGCGTCTGATTCAGTGTTGTTTGATTCACTTAGAAGACTTGAATTGATGGCTTTATCAGTTGATTCACTGCAGGCAACTGAGATTGGCAAGGCTGTTAATGGCCTCCGAAAGCACGGATCGAAGCGCATCCGCCATCTTGCTCGAGTTCTTATCTTGGAGTGGAAACAAATGGTGGACGTGTGGGTAAAAGCCACCGCTGCGGTTCAAGCTGCAGAAGTCACACCCGACTCGAAAAACAAGTCTGCTGCTGCAACAGAAGAAGAAGATGATTATGAAGAAGAAGGGCTTCCATCTCCTCCTTTAGACGAAGCTGCATTTTTTACGACGCAGCCGACATCCATGGAGCTCTCACAAAAACGTTATCTACTTTACGTTACATCGTTTCTGATCGACTGTATTTTACTTTCGGTTCCGTTCCGTTCCCTGCTGAAGTTCTTTGATGGCATGGACGATGATGGAAATTCACGATTACGAATCGGGATATATGTCGTTTCAGATCCTCGAAACAGCGGGGAAGTCGTCAAGAACCGTGATAATGTGAGAAAAACATCGAATGGCGATCCAAATTCTACGAGGTGTAAACAACAAACCGTTCGAGAGGTCGACGTGCCTGCTAAGGTTAATAAGAGTCAAATGAAGGAACAAGTTGTGAAGCCAAATTCTGGGCTTTTGAGGCCACAGAAGCTAAGCACAGAGCAGAAGAACACACAGCGCAAAATGGATAAGCCTACAATCCCAAAGAGGAGCCAGCAAGATAACTTCAAGAGCTCGGACGAGGTTGCGGTTCAAGTGAAACTTGAAGCTACAAAGAGGAAACTCCAAGAGAGTTACCAACAAGCTGAAAACGCCAAGAAGCAGCGTACGATACAGGTTATGGAACTACACGATCTTCCCAAGCAGGGACTCGGCCATCGAAATCCACACATAAAATCTGGAGGATACCAGCGGCATTGGGCGAACGGTCGGCGTTAG

Homology

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BLAST of CmoCh14G004970.1 vs. Swiss-Prot
Match: MD26B_ARATH (Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis thaliana GN=MED26B PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.2e-77
Identity = 217/491 (44.20%), Postives = 274/491 (55.80%), Query Frame = 1


Query: 5   SGSLDSWRNYFRN-ANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRCFGC 64
           SGSLDSWR YFR   +SDIF IID+AI+VAA+DCP +FK RRD+IAE LFSCR+ RC GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVVGDD-SDGGETGFKSDFAGDGCEFE-GGGSKESKVYSSRDDAGEMNFISFGEA 124
           D +EL+V GDD ++ G TG          ++E  GGSKESK  SSR D  ++   ++   
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQI-VSNYTFD 123

Query: 125 EAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQATEIG 184
           EAEAL+DEIE+ S + +EV RIKEIL N E+  +SVL DSLR L+LM+L+VD L++TEIG
Sbjct: 124 EAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIG 183

Query: 185 KAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEED 244
           KAVNGLRKH S +IR LA+ LI EWK++VD WV  T  +  AE TP+S N S        
Sbjct: 184 KAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLD----- 243

Query: 245 DYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLLKFFDGM 304
             EEE  PS P D    FT +P   E+S                           FFD +
Sbjct: 244 --EEEAFPSLPYD-VDIFTPEPNGFEISH--------------------------FFDSL 303

Query: 305 DDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDVPAKVNK 364
           D DGN            PRNS E   +R++ R+  N         Q  ++  D P +   
Sbjct: 304 DFDGN------------PRNSEEHNTSREHERRPQNIAKRKPEGTQMRIQ--DAPFR--- 363

Query: 365 SQMKEQVVKPNSGLLRPQKLSTEQ--KN---TQRKMDKPTIPKR------------SQQD 424
             +K        G  RP K STEQ  KN   +  K +KP I ++             QQ+
Sbjct: 364 -SIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQKRKAPGPQQE 423

Query: 425 NFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHIKSG 476
             K  D      K E  KRKLQESYQ  ENAKKQRTIQV+E+  +PKQG   +    + G
Sbjct: 424 KLKGLD---ADAKFEFAKRKLQESYQHHENAKKQRTIQVLEM--IPKQGSAQKPQLKRPG 436

[Close]

BLAST of CmoCh14G004970.1 vs. Swiss-Prot
Match: MD26A_ARATH (Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis thaliana GN=MED26A PE=2 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 9.0e-57
Identity = 184/471 (39.07%), Postives = 242/471 (51.38%), Query Frame = 1


Query: 5   SGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRCFGCD 64
           S SLD+WR YFR  +SDIF IID+AI+VAA+D PKEFK R DRIAE LFSC+++RC GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVVGDDSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNFISFGEAEAE 124
            +EL++ GD++         +  G G    GGG         R D+G             
Sbjct: 67  HLELSIAGDEA-------AVEIVGVG----GGGD--------RGDSG------------- 126

Query: 125 ALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQATEIGKAV 184
             T E E+ S  V+EV+RI++IL+N ++  DSVL +SLR+LE M++SVD L+ TEIGKAV
Sbjct: 127 VATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAV 186

Query: 185 NGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEEDDYE 244
           NGLR+H S +I  LA+ L  EWK++VD W+     +   E TP+S N S          E
Sbjct: 187 NGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVID-------E 246

Query: 245 EEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLLKFFDGMDDD 304
           EE  PSPP D    +  +P   ELSQ          ++DC                +D D
Sbjct: 247 EEAFPSPPHD-LDIYAPEPNGFELSQ----------ILDC----------------LDCD 306

Query: 305 GNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDVPAKVNKSQM 364
           GN R  +        R S      R   + T++ +     C  Q  R  +   +  K   
Sbjct: 307 GNPRHSV---ESKHERKSQSSAGRRP--KGTNDANVVGRYCNDQQTRREEADVRPMKHSA 366

Query: 365 KEQVVKPNSGLLRPQKLSTEQ--KNTQRKMDKPTIPKRS----QQDNFKSSDEVAVQVKL 424
            + VV+P     R  K S EQ     QRK    T  KR     QQD  K+ D      K 
Sbjct: 367 TD-VVEPK----RQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDP---DSKF 395

Query: 425 EATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHIKSGGYQRH 470
           E  KRKLQESY Q ENAK+QRTIQV+E   +PKQ    + P +K    +R+
Sbjct: 427 EFAKRKLQESYHQHENAKRQRTIQVLE--TIPKQNKVQK-PQLKRPATRRY 395

[Close]

BLAST of CmoCh14G004970.1 vs. Swiss-Prot
Match: MD26C_ARATH (Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis thaliana GN=MED26C PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-16
Identity = 67/221 (30.32%), Postives = 106/221 (47.96%), Query Frame = 1


Query: 8   LDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLT-RCFGCDRV 67
           LD +R+   NA  D+++ ID AILVA+ D  +E K RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD-- 62

Query: 68  ELAVVGDDSDGGETGFKSDFAGDGCEFEG--GGSKESKVYSSRDDAGEMNFISFGEAEAE 127
                              F G G   E   G     +V+   ++  E    +  E E  
Sbjct: 63  -------------------FGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVR 122

Query: 128 ALTDEIEQESQI----------VEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDS 187
             +  +E +              + ++ IKE L +  + S+  L + L+ LE M ++  +
Sbjct: 123 EKSVNVEDDDDFDPFAGLFDDEQKSIVEIKEKLED-PDLSEESLVELLQNLEDMDITFQA 182

Query: 188 LQATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVK 216
           LQ T+IG+ VN +RKH S  +R LA+ L+ +WK+ VD WVK
Sbjct: 183 LQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVK 201

[Close]

BLAST of CmoCh14G004970.1 vs. TrEMBL
Match: A0A0A0LBK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G817210 PE=4 SV=1)

HSP 1 Score: 680.2 bits (1754), Expect = 1.7e-192
Identity = 381/491 (77.60%), Postives = 405/491 (82.48%), Query Frame = 1


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIF IIDYAILVAASDCPKEF+LRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCDRVELAVVGD-DSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMN---FI 120
            GCDRVELAV GD D D GETGFKSDF  DGCEFE GGSKESKVYSSRDD GEMN     
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 SFGEAEAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQ 180
           +F   EAEALTDEIEQESQIV EVLRIKEILNNFE+ SD VLF+SLRRLELMALSVD+LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAA 240
           ATEIGKAVN LRKHGSKRIRHLARVLI+EWK+MVD+WV+ATAAVQ AEVTPDSKNKS AA
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKS-AA 240

Query: 241 TEEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLLK 300
            +EEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQ                          
Sbjct: 241 VKEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQ-------------------------- 300

Query: 301 FFDGMDDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDVP 360
           FFDGMDDDGN            PRNSG+ VKNR+NVRKTSNG+ N TRC QQT REV+V 
Sbjct: 301 FFDGMDDDGN------------PRNSGDFVKNRNNVRKTSNGNQNPTRCNQQTTREVNVL 360

Query: 361 AKVNKSQMKEQVVKP--------NSGLLRPQKLSTEQKNT----QRKMDKPTIPKRSQQD 420
           +K NK+QMKEQVVKP        NSGLLR QKLSTEQK+     QRK++KPTIPKR+QQD
Sbjct: 361 SKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKDNHEKFQRKLEKPTIPKRNQQD 420

Query: 421 NFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHIKSG 476
           NFK SDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQG+GHRNPH+KSG
Sbjct: 421 NFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGIGHRNPHLKSG 452

[Close]

BLAST of CmoCh14G004970.1 vs. TrEMBL
Match: M5VPN3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005771mg PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 5.2e-128
Identity = 296/496 (59.68%), Postives = 332/496 (66.94%), Query Frame = 1


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MA K+GSL+ WRNYFR ANSDIF IID+AI+VAASDCPKEFKLRRDRIAE+LFSCRLTRC
Sbjct: 1   MATKTGSLNYWRNYFRTANSDIFDIIDHAIMVAASDCPKEFKLRRDRIAERLFSCRLTRC 60

Query: 61  FGCDRVELAVVGDDS--DGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNF--- 120
            GCD++ELAV G D   D  + G KS F  DG E E G SKESKV SSRDD GEMN    
Sbjct: 61  SGCDKMELAVPGGDGEDDDDDGGCKSGFDRDGGEVEAGASKESKVNSSRDDQGEMNMNQL 120

Query: 121 ISFGEAEAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSL 180
            ++    AEALT EIE+ES+IV EV RIKEI NN EE SD+VLF+SLR+L+LMAL+V++L
Sbjct: 121 SNYSYGLAEALTAEIEEESEIVGEVFRIKEIFNNCEEESDTVLFESLRKLQLMALNVETL 180

Query: 181 QATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAA 240
           +ATEIGKAVNGLRKHGSK+IRHLAR LI  WK MVD WV AT A+   E   DS + S  
Sbjct: 181 KATEIGKAVNGLRKHGSKKIRHLARSLIDGWKDMVDEWVNATTALAGTEAMSDSVDPSF- 240

Query: 241 ATEEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLL 300
                DD  EEGLPSPPLDE AFF TQ TSMELSQ                         
Sbjct: 241 -----DD--EEGLPSPPLDEGAFFATQTTSMELSQ------------------------- 300

Query: 301 KFFDGMDDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDV 360
            FFDGMDD GN            PRN      NRDN RK S    N  + KQQ   E +V
Sbjct: 301 -FFDGMDDFGN------------PRN------NRDNGRKPSVEKQNIVKQKQQPSNEANV 360

Query: 361 PAKVNKSQM--KEQVVKPN------SGLLRPQKLSTEQK-----NTQRKMDKPTIPKR-- 420
             K NK++   K++VVKPN      SG  RP K++ EQK       Q+K DK  I KR  
Sbjct: 361 LPKENKNEQVKKQEVVKPNKLSNTDSGPGRPPKVNMEQKVNNETKIQQKTDKVAIQKRQL 420

Query: 421 -SQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNP 476
             QQD FK SDEVAVQVKLEATKRKLQE YQQAENAK+QRT+QVMEL DLPKQGL  RNP
Sbjct: 421 TGQQDKFKCSDEVAVQVKLEATKRKLQERYQQAENAKRQRTVQVMELQDLPKQGLARRNP 444

[Close]

BLAST of CmoCh14G004970.1 vs. TrEMBL
Match: A0A067EEY5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012904mg PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 6.8e-128
Identity = 298/499 (59.72%), Postives = 337/499 (67.54%), Query Frame = 1


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           M+ KSGSLD+WRNYFR+AN DIF IID+A++VAA DCPKEFKLRRDRIAE+LF+C+LTRC
Sbjct: 1   MSMKSGSLDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLTRC 60

Query: 61  FGCDRVELAVV-GDDSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNFIS-F 120
            GCDRVELAV  G++ D  E     D   DGCEFE GGSKESKV S RDD      +S F
Sbjct: 61  SGCDRVELAVPSGNEFDDDE----EDCKRDGCEFEAGGSKESKVNSCRDDHVSNQIVSNF 120

Query: 121 GEAE-AEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQA 180
              + AEALTDEIE+ESQ+V EVLRIKEIL+N  + SDSVLF+SLRRL+LMAL+VD+L+A
Sbjct: 121 SSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKA 180

Query: 181 TEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAAT 240
           TEIGKAVNGLRKHGSK+IRHLAR LI  WK +VD WV AT A+  AE TPDS N S    
Sbjct: 181 TEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAI--AEGTPDSVNPSVVD- 240

Query: 241 EEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLLKF 300
                 EEEGLPSPPLDE AFFT     +ELSQ                          F
Sbjct: 241 ------EEEGLPSPPLDELAFFTGPSAGIELSQ--------------------------F 300

Query: 301 FDGMDDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDVPA 360
           FDGMDD GN            PRNSGE +KNR++ RK S  + N  + KQQT  E +V A
Sbjct: 301 FDGMDDFGN------------PRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPNVLA 360

Query: 361 KVNKS-QMKEQ--VVKP----------NSGLLRPQKLSTEQK-----NTQRKMDKPTI-- 420
           K N S QMK Q  VV+P          NSG  RP K +  QK       Q+K DK  I  
Sbjct: 361 KDNNSLQMKRQEAVVRPNKPSNKPSSTNSGPGRPLKQNMGQKVDNESKLQQKSDKAAINK 420

Query: 421 -PKRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGH 476
            P  SQ +  KSSDE AVQVKLEATKRKLQESYQ AENAKKQRTIQVMELHDLPKQGLG+
Sbjct: 421 KPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVMELHDLPKQGLGN 448

[Close]

BLAST of CmoCh14G004970.1 vs. TrEMBL
Match: V4S8D9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011717mg PE=4 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 2.6e-127
Identity = 297/499 (59.52%), Postives = 336/499 (67.33%), Query Frame = 1


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           M+ KSGSLD+WRNYFR+AN DIF IID+A++VAA DCPKEFKLRRDRIAE+LF+C+LTRC
Sbjct: 1   MSMKSGSLDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLTRC 60

Query: 61  FGCDRVELAVV-GDDSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNFIS-F 120
            GCDRVELAV  G++ D  E     D   DGCEFE GGSKESKV S RDD      +S F
Sbjct: 61  SGCDRVELAVPSGNEFDDDE----EDCKRDGCEFEAGGSKESKVNSCRDDHVSNQIVSNF 120

Query: 121 GEAE-AEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQA 180
              + AEALTDEIE+ESQ+V EVLRIKEIL+N  + SDSVLF+SLRRL+LMAL+VD+L+A
Sbjct: 121 SSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKA 180

Query: 181 TEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAAT 240
           TEIGKAVNGLRKHGSK+IRHLAR LI  WK +VD WV AT A+  AE TPDS N S    
Sbjct: 181 TEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAI--AEGTPDSVNPSVVD- 240

Query: 241 EEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLLKF 300
                 EEEGLPSPPLDE AFF      +ELSQ                          F
Sbjct: 241 ------EEEGLPSPPLDELAFFAGPSAGIELSQ--------------------------F 300

Query: 301 FDGMDDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDVPA 360
           FDGMDD GN            PRNSGE +KNR++ RK S  + N  + KQQT  E +V A
Sbjct: 301 FDGMDDFGN------------PRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPNVLA 360

Query: 361 KVNKS-QMKEQ--VVKP----------NSGLLRPQKLSTEQK-----NTQRKMDKPTI-- 420
           K N S QMK Q  VV+P          NSG  RP K +  QK       Q+K DK  I  
Sbjct: 361 KDNNSLQMKRQEAVVRPNKPANKPSNTNSGPGRPLKQNMGQKVDNESKLQQKSDKAAINK 420

Query: 421 -PKRSQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGH 476
            P  SQ +  KSSDE AVQVKLEATKRKLQESYQ AENAKKQRTIQVMELHDLPKQGLG+
Sbjct: 421 KPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVMELHDLPKQGLGN 448

[Close]

BLAST of CmoCh14G004970.1 vs. TrEMBL
Match: A0A067ER24_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012904mg PE=4 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 3.7e-126
Identity = 298/504 (59.13%), Postives = 338/504 (67.06%), Query Frame = 1


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           M+ KSGSLD+WRNYFR+AN DIF IID+A++VAA DCPKEFKLRRDRIAE+LF+C+LTRC
Sbjct: 1   MSMKSGSLDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLTRC 60

Query: 61  FGCDRVELAVV-GDDSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNFIS-F 120
            GCDRVELAV  G++ D  E     D   DGCEFE GGSKESKV S RDD      +S F
Sbjct: 61  SGCDRVELAVPSGNEFDDDE----EDCKRDGCEFEAGGSKESKVNSCRDDHVSNQIVSNF 120

Query: 121 GEAE-AEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQA 180
              + AEALTDEIE+ESQ+V EVLRIKEIL+N  + SDSVLF+SLRRL+LMAL+VD+L+A
Sbjct: 121 SSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKA 180

Query: 181 TEIGKAVNGLRKHGSKRIRHLARVLI-----LEWKQMVDVWVKATAAVQAAEVTPDSKNK 240
           TEIGKAVNGLRKHGSK+IRHLAR LI       WK +VD WV AT A+  AE TPDS N 
Sbjct: 181 TEIGKAVNGLRKHGSKQIRHLARTLIDFLNCRGWKDLVDEWVNATKAI--AEGTPDSVNP 240

Query: 241 SAAATEEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFR 300
           S          EEEGLPSPPLDE AFFT     +ELSQ                      
Sbjct: 241 SVVD-------EEEGLPSPPLDELAFFTGPSAGIELSQ---------------------- 300

Query: 301 SLLKFFDGMDDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVRE 360
               FFDGMDD GN            PRNSGE +KNR++ RK S  + N  + KQQT  E
Sbjct: 301 ----FFDGMDDFGN------------PRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNE 360

Query: 361 VDVPAKVNKS-QMKEQ--VVKPN----------SGLLRPQKLSTEQK-----NTQRKMDK 420
            +V AK N S QMK Q  VV+PN          SG  RP K +  QK       Q+K DK
Sbjct: 361 PNVLAKDNNSLQMKRQEAVVRPNKPSNKPSSTNSGPGRPLKQNMGQKVDNESKLQQKSDK 420

Query: 421 PTIPKR---SQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPK 476
             I K+   SQ +  KSSDE AVQVKLEATKRKLQESYQ AENAKKQRTIQVMELHDLPK
Sbjct: 421 AAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVMELHDLPK 453

[Close]

BLAST of CmoCh14G004970.1 vs. TAIR10
Match: AT5G05140.1 (AT5G05140.1 Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 292.0 bits (746), Expect = 6.8e-79
Identity = 217/491 (44.20%), Postives = 274/491 (55.80%), Query Frame = 1


Query: 5   SGSLDSWRNYFRN-ANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRCFGC 64
           SGSLDSWR YFR   +SDIF IID+AI+VAA+DCP +FK RRD+IAE LFSCR+ RC GC
Sbjct: 4   SGSLDSWREYFRRRGDSDIFGIIDHAIMVAATDCPNKFKSRRDKIAELLFSCRVNRCVGC 63

Query: 65  DRVELAVVGDD-SDGGETGFKSDFAGDGCEFE-GGGSKESKVYSSRDDAGEMNFISFGEA 124
           D +EL+V GDD ++ G TG          ++E  GGSKESK  SSR D  ++   ++   
Sbjct: 64  DHLELSVPGDDEANRGTTGNGGGGTAVDEDYEVAGGSKESKANSSRGDNNQI-VSNYTFD 123

Query: 125 EAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQATEIG 184
           EAEAL+DEIE+ S + +EV RIKEIL N E+  +SVL DSLR L+LM+L+VD L++TEIG
Sbjct: 124 EAEALSDEIEEFSVVSKEVARIKEILLNKEDEPNSVLLDSLRHLKLMSLNVDILKSTEIG 183

Query: 185 KAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEED 244
           KAVNGLRKH S +IR LA+ LI EWK++VD WV  T  +  AE TP+S N S        
Sbjct: 184 KAVNGLRKHSSDKIRQLAKTLIAEWKELVDQWVNTTKEITGAEGTPESANPSVLD----- 243

Query: 245 DYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLLKFFDGM 304
             EEE  PS P D    FT +P   E+S                           FFD +
Sbjct: 244 --EEEAFPSLPYD-VDIFTPEPNGFEISH--------------------------FFDSL 303

Query: 305 DDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDVPAKVNK 364
           D DGN            PRNS E   +R++ R+  N         Q  ++  D P +   
Sbjct: 304 DFDGN------------PRNSEEHNTSREHERRPQNIAKRKPEGTQMRIQ--DAPFR--- 363

Query: 365 SQMKEQVVKPNSGLLRPQKLSTEQ--KN---TQRKMDKPTIPKR------------SQQD 424
             +K        G  RP K STEQ  KN   +  K +KP I ++             QQ+
Sbjct: 364 -SIKPSSATDFDGTRRPVKQSTEQRMKNETVSVHKSEKPMIQRKPVVTEQKRKAPGPQQE 423

Query: 425 NFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHIKSG 476
             K  D      K E  KRKLQESYQ  ENAKKQRTIQV+E+  +PKQG   +    + G
Sbjct: 424 KLKGLD---ADAKFEFAKRKLQESYQHHENAKKQRTIQVLEM--IPKQGSAQKPQLKRPG 436

[Close]

BLAST of CmoCh14G004970.1 vs. TAIR10
Match: AT3G10820.2 (AT3G10820.2 Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 222.6 bits (566), Expect = 5.1e-58
Identity = 184/471 (39.07%), Postives = 242/471 (51.38%), Query Frame = 1


Query: 5   SGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRCFGCD 64
           S SLD+WR YFR  +SDIF IID+AI+VAA+D PKEFK R DRIAE LFSC+++RC GCD
Sbjct: 7   SVSLDTWREYFRRGDSDIFGIIDHAIMVAAADWPKEFKSRSDRIAELLFSCKVSRCIGCD 66

Query: 65  RVELAVVGDDSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNFISFGEAEAE 124
            +EL++ GD++         +  G G    GGG         R D+G             
Sbjct: 67  HLELSIAGDEA-------AVEIVGVG----GGGD--------RGDSG------------- 126

Query: 125 ALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQATEIGKAV 184
             T E E+ S  V+EV+RI++IL+N ++  DSVL +SLR+LE M++SVD L+ TEIGKAV
Sbjct: 127 VATGEGEEASVSVDEVMRIRDILSNKDDEKDSVLLESLRKLESMSMSVDILKDTEIGKAV 186

Query: 185 NGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAATEEEDDYE 244
           NGLR+H S +I  LA+ L  EWK++VD W+     +   E TP+S N S          E
Sbjct: 187 NGLRRHSSDKISKLAKTLFAEWKRLVDQWMNTPEEMAGTEGTPESLNLSVID-------E 246

Query: 245 EEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLLKFFDGMDDD 304
           EE  PSPP D    +  +P   ELSQ          ++DC                +D D
Sbjct: 247 EEAFPSPPHD-LDIYAPEPNGFELSQ----------ILDC----------------LDCD 306

Query: 305 GNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDVPAKVNKSQM 364
           GN R  +        R S      R   + T++ +     C  Q  R  +   +  K   
Sbjct: 307 GNPRHSV---ESKHERKSQSSAGRRP--KGTNDANVVGRYCNDQQTRREEADVRPMKHSA 366

Query: 365 KEQVVKPNSGLLRPQKLSTEQ--KNTQRKMDKPTIPKRS----QQDNFKSSDEVAVQVKL 424
            + VV+P     R  K S EQ     QRK    T  KR     QQD  K+ D      K 
Sbjct: 367 TD-VVEPK----RQTKQSREQMVSAIQRKPTAVTEQKRKLAGPQQDKLKALDP---DSKF 395

Query: 425 EATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHIKSGGYQRH 470
           E  KRKLQESY Q ENAK+QRTIQV+E   +PKQ    + P +K    +R+
Sbjct: 427 EFAKRKLQESYHQHENAKRQRTIQVLE--TIPKQNKVQK-PQLKRPATRRY 395

[Close]

BLAST of CmoCh14G004970.1 vs. TAIR10
Match: AT5G09850.1 (AT5G09850.1 Transcription elongation factor (TFIIS) family protein)

HSP 1 Score: 89.4 bits (220), Expect = 6.7e-18
Identity = 67/221 (30.32%), Postives = 106/221 (47.96%), Query Frame = 1


Query: 8   LDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLT-RCFGCDRV 67
           LD +R+   NA  D+++ ID AILVA+ D  +E K RRD I E+L++  +  +C  CD  
Sbjct: 3   LDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCD-- 62

Query: 68  ELAVVGDDSDGGETGFKSDFAGDGCEFEG--GGSKESKVYSSRDDAGEMNFISFGEAEAE 127
                              F G G   E   G     +V+   ++  E    +  E E  
Sbjct: 63  -------------------FGGGGNVTEAAIGRVNNGRVHEETEEEDEEGVTAAAEEEVR 122

Query: 128 ALTDEIEQESQI----------VEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDS 187
             +  +E +              + ++ IKE L +  + S+  L + L+ LE M ++  +
Sbjct: 123 EKSVNVEDDDDFDPFAGLFDDEQKSIVEIKEKLED-PDLSEESLVELLQNLEDMDITFQA 182

Query: 188 LQATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVK 216
           LQ T+IG+ VN +RKH S  +R LA+ L+ +WK+ VD WVK
Sbjct: 183 LQETDIGRHVNRVRKHPSNNVRRLAKQLVKKWKETVDEWVK 201

[Close]

BLAST of CmoCh14G004970.1 vs. NCBI nr
Match: gi|659085053|ref|XP_008443218.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cucumis melo])

HSP 1 Score: 686.4 bits (1770), Expect = 3.5e-194
Identity = 384/491 (78.21%), Postives = 406/491 (82.69%), Query Frame = 1


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIF IIDYAILVAASDCPKEF+LRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCDRVELAVVGD-DSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMN---FI 120
            GCDRVELAV GD D D GETGFKSDFAGDGCEFE GGSKESKVYSSRDD GEMN     
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFAGDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 SFGEAEAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQ 180
           +F   EAEALTDEIEQESQIV EVLRIKEILNNFE+ SDSVLF+SLRRLELMALSVD+LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDSVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAA 240
           ATEIGKAVN LRKHGSKRIRHLARVLI+EWK MVDVWV+ATAAVQ AEVTPDSK+KS AA
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKDMVDVWVQATAAVQGAEVTPDSKSKS-AA 240

Query: 241 TEEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLLK 300
            +EEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQ                          
Sbjct: 241 VKEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQ-------------------------- 300

Query: 301 FFDGMDDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDVP 360
           FFDGMDDDGN            PRNSG+ VKNR+NVRKTSNG+ N TRC QQT REV+V 
Sbjct: 301 FFDGMDDDGN------------PRNSGDFVKNRNNVRKTSNGNQNPTRCNQQTTREVNVL 360

Query: 361 AKVNKSQMKEQVVKP--------NSGLLRPQKLSTEQKNT----QRKMDKPTIPKRSQQD 420
           +K NK+QMKEQVVKP        NSGLLR QKLSTEQK+     QRK++KPTIPKR+QQD
Sbjct: 361 SKENKTQMKEQVVKPNNKPSSNTNSGLLRQQKLSTEQKDNHEKFQRKLEKPTIPKRNQQD 420

Query: 421 NFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHIKSG 476
           NFK SDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQG+GHRNPH+KSG
Sbjct: 421 NFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGIGHRNPHLKSG 452

[Close]

BLAST of CmoCh14G004970.1 vs. NCBI nr
Match: gi|449437690|ref|XP_004136624.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cucumis sativus])

HSP 1 Score: 680.2 bits (1754), Expect = 2.5e-192
Identity = 381/491 (77.60%), Postives = 405/491 (82.48%), Query Frame = 1


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MAAKSGSLDSWRNYFRNANSDIF IIDYAILVAASDCPKEF+LRRDRIAEQLFSCRLTRC
Sbjct: 1   MAAKSGSLDSWRNYFRNANSDIFGIIDYAILVAASDCPKEFRLRRDRIAEQLFSCRLTRC 60

Query: 61  FGCDRVELAVVGD-DSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMN---FI 120
            GCDRVELAV GD D D GETGFKSDF  DGCEFE GGSKESKVYSSRDD GEMN     
Sbjct: 61  LGCDRVELAVAGDIDGDDGETGFKSDFVRDGCEFEAGGSKESKVYSSRDDIGEMNCNRVS 120

Query: 121 SFGEAEAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQ 180
           +F   EAEALTDEIEQESQIV EVLRIKEILNNFE+ SD VLF+SLRRLELMALSVD+LQ
Sbjct: 121 NFSFGEAEALTDEIEQESQIVGEVLRIKEILNNFEDESDPVLFESLRRLELMALSVDTLQ 180

Query: 181 ATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAA 240
           ATEIGKAVN LRKHGSKRIRHLARVLI+EWK+MVD+WV+ATAAVQ AEVTPDSKNKS AA
Sbjct: 181 ATEIGKAVNCLRKHGSKRIRHLARVLIMEWKEMVDLWVQATAAVQGAEVTPDSKNKS-AA 240

Query: 241 TEEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLLK 300
            +EEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQ                          
Sbjct: 241 VKEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQ-------------------------- 300

Query: 301 FFDGMDDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDVP 360
           FFDGMDDDGN            PRNSG+ VKNR+NVRKTSNG+ N TRC QQT REV+V 
Sbjct: 301 FFDGMDDDGN------------PRNSGDFVKNRNNVRKTSNGNQNPTRCNQQTTREVNVL 360

Query: 361 AKVNKSQMKEQVVKP--------NSGLLRPQKLSTEQKNT----QRKMDKPTIPKRSQQD 420
           +K NK+QMKEQVVKP        NSGLLR QKLSTEQK+     QRK++KPTIPKR+QQD
Sbjct: 361 SKENKTQMKEQVVKPNNKPSSNTNSGLLRAQKLSTEQKDNHEKFQRKLEKPTIPKRNQQD 420

Query: 421 NFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHIKSG 476
           NFK SDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQG+GHRNPH+KSG
Sbjct: 421 NFKCSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGIGHRNPHLKSG 452

[Close]

BLAST of CmoCh14G004970.1 vs. NCBI nr
Match: gi|1009159736|ref|XP_015897974.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Ziziphus jujuba])

HSP 1 Score: 510.0 bits (1312), Expect = 4.5e-141
Identity = 309/494 (62.55%), Postives = 345/494 (69.84%), Query Frame = 1


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MA KSGSLD WRNYFR ANSDIF IID+AI+VAASDCPKEF+LRRDRIAE++FSCRLTRC
Sbjct: 1   MAKKSGSLDYWRNYFRTANSDIFGIIDHAIMVAASDCPKEFRLRRDRIAERVFSCRLTRC 60

Query: 61  FGCDRVELAVVGDDSDGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMN---FIS 120
            GCDRVELAV GD+ +  + G KS F  DG EFE G SKESKV SSRDD G+MN     +
Sbjct: 61  SGCDRVELAVPGDEEEDEDGGCKSGFDRDGAEFEAGASKESKVNSSRDDQGDMNTNQVSN 120

Query: 121 FGEAEAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSLQA 180
           +   EAEALTDEIE+ SQI+EEV RIKEIL N EE S+SVLF+SLRRL+LMAL+VD+L+A
Sbjct: 121 YSYGEAEALTDEIEEASQILEEVSRIKEILRNCEEESESVLFESLRRLQLMALTVDTLKA 180

Query: 181 TEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAAAT 240
           TEIGKAVNGLR+HGSK+I HLAR LI  WK MVD WV AT AV  +E TPDS N S    
Sbjct: 181 TEIGKAVNGLRRHGSKQICHLARTLIDGWKVMVDEWVNATEAVAGSEGTPDSANPSYI-- 240

Query: 241 EEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLLKF 300
              DD EEEGLPSPPLDE AFF TQPTSMELSQ                          F
Sbjct: 241 ---DDDEEEGLPSPPLDEGAFFATQPTSMELSQ--------------------------F 300

Query: 301 FDGMDDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDVPA 360
           FDGMDDDGN            PRNSGE +KNR N R+ S  + N+T+  QQ+  EV++  
Sbjct: 301 FDGMDDDGN------------PRNSGEFIKNRANGRRPSVENQNTTKRNQQSRNEVNILR 360

Query: 361 KVNKSQM--KEQVVKP------NSGLLRPQKLSTEQK-----NTQRKMDKPTIPKR---S 420
           K NK Q   KE  +KP       SG  RP KLS EQK       Q+K DK  + +R    
Sbjct: 361 KENKIQQVKKEAGMKPGKPVNAGSGPGRPPKLSMEQKIKNETKFQQKSDKIAVQRRPAIG 420

Query: 421 QQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHI 476
            QD FK SDEVA QVKLEATKRKLQE YQQAENAKKQRTIQVMELHDLPKQGLGHRNPH+
Sbjct: 421 AQDKFKCSDEVADQVKLEATKRKLQERYQQAENAKKQRTIQVMELHDLPKQGLGHRNPHV 451

[Close]

BLAST of CmoCh14G004970.1 vs. NCBI nr
Match: gi|645241950|ref|XP_008227322.1| (PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Prunus mume])

HSP 1 Score: 466.5 bits (1199), Expect = 5.7e-128
Identity = 296/496 (59.68%), Postives = 333/496 (67.14%), Query Frame = 1


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MA K+GSL+ WRNYFR ANSDIF IID+AI+VAASDCPKEFKLRRDRIAE+LFSCRLTRC
Sbjct: 1   MATKTGSLNYWRNYFRTANSDIFDIIDHAIMVAASDCPKEFKLRRDRIAERLFSCRLTRC 60

Query: 61  FGCDRVELAVVGDDS--DGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNF--- 120
            GCD++ELAV G D   D  + G KS F  DG E E G SKESKV SSRDD GEMN    
Sbjct: 61  SGCDKMELAVPGGDGEDDDDDGGCKSGFDRDGGEVEAGASKESKVNSSRDDQGEMNMNQL 120

Query: 121 ISFGEAEAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSL 180
            ++    AEALT EIE+ES+IV EV RIKEI NN EE SD+VLF+SLR+L+LMAL+V++L
Sbjct: 121 SNYSYGLAEALTAEIEEESEIVGEVFRIKEIFNNCEEESDTVLFESLRKLQLMALNVETL 180

Query: 181 QATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAA 240
           +ATEIGKAVNGLRKHGSK+IRHLAR LI  WK MVD WV AT A+   E   DS + S  
Sbjct: 181 KATEIGKAVNGLRKHGSKKIRHLARSLIDGWKDMVDEWVNATTALAGTEAMSDSVDPSF- 240

Query: 241 ATEEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLL 300
                DD  EEGLPSPPLDE AFF TQ TSMELSQ                         
Sbjct: 241 -----DD--EEGLPSPPLDEGAFFATQTTSMELSQ------------------------- 300

Query: 301 KFFDGMDDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDV 360
            FFDGMDD GN            PRN      NRDN RK S    N  + KQQ   E +V
Sbjct: 301 -FFDGMDDFGN------------PRN------NRDNGRKPSVEKQNIVKQKQQPSNEANV 360

Query: 361 PAKVNKSQM--KEQVVKPN------SGLLRPQKLSTEQK-----NTQRKMDKPTIPKR-- 420
             K NK++   K++VVKPN      SG  RP K++ EQ+       Q+K DK  I KR  
Sbjct: 361 LPKENKNEQVKKQEVVKPNKLSSTDSGPGRPPKVNMEQRVNNETKIQQKTDKVAIQKRQL 420

Query: 421 -SQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNP 476
            SQQD FK SDEVAVQVKLEATKRKLQE YQQAENAK+QRT+QVMEL DLPKQGL  RNP
Sbjct: 421 TSQQDKFKCSDEVAVQVKLEATKRKLQERYQQAENAKRQRTVQVMELQDLPKQGLARRNP 444

[Close]

BLAST of CmoCh14G004970.1 vs. NCBI nr
Match: gi|595803734|ref|XP_007202053.1| (hypothetical protein PRUPE_ppa005771mg [Prunus persica])

HSP 1 Score: 466.1 bits (1198), Expect = 7.4e-128
Identity = 296/496 (59.68%), Postives = 332/496 (66.94%), Query Frame = 1


Query: 1   MAAKSGSLDSWRNYFRNANSDIFSIIDYAILVAASDCPKEFKLRRDRIAEQLFSCRLTRC 60
           MA K+GSL+ WRNYFR ANSDIF IID+AI+VAASDCPKEFKLRRDRIAE+LFSCRLTRC
Sbjct: 1   MATKTGSLNYWRNYFRTANSDIFDIIDHAIMVAASDCPKEFKLRRDRIAERLFSCRLTRC 60

Query: 61  FGCDRVELAVVGDDS--DGGETGFKSDFAGDGCEFEGGGSKESKVYSSRDDAGEMNF--- 120
            GCD++ELAV G D   D  + G KS F  DG E E G SKESKV SSRDD GEMN    
Sbjct: 61  SGCDKMELAVPGGDGEDDDDDGGCKSGFDRDGGEVEAGASKESKVNSSRDDQGEMNMNQL 120

Query: 121 ISFGEAEAEALTDEIEQESQIVEEVLRIKEILNNFEEASDSVLFDSLRRLELMALSVDSL 180
            ++    AEALT EIE+ES+IV EV RIKEI NN EE SD+VLF+SLR+L+LMAL+V++L
Sbjct: 121 SNYSYGLAEALTAEIEEESEIVGEVFRIKEIFNNCEEESDTVLFESLRKLQLMALNVETL 180

Query: 181 QATEIGKAVNGLRKHGSKRIRHLARVLILEWKQMVDVWVKATAAVQAAEVTPDSKNKSAA 240
           +ATEIGKAVNGLRKHGSK+IRHLAR LI  WK MVD WV AT A+   E   DS + S  
Sbjct: 181 KATEIGKAVNGLRKHGSKKIRHLARSLIDGWKDMVDEWVNATTALAGTEAMSDSVDPSF- 240

Query: 241 ATEEEDDYEEEGLPSPPLDEAAFFTTQPTSMELSQKRYLLYVTSFLIDCILLSVPFRSLL 300
                DD  EEGLPSPPLDE AFF TQ TSMELSQ                         
Sbjct: 241 -----DD--EEGLPSPPLDEGAFFATQTTSMELSQ------------------------- 300

Query: 301 KFFDGMDDDGNSRLRIGIYVVSDPRNSGEVVKNRDNVRKTSNGDPNSTRCKQQTVREVDV 360
            FFDGMDD GN            PRN      NRDN RK S    N  + KQQ   E +V
Sbjct: 301 -FFDGMDDFGN------------PRN------NRDNGRKPSVEKQNIVKQKQQPSNEANV 360

Query: 361 PAKVNKSQM--KEQVVKPN------SGLLRPQKLSTEQK-----NTQRKMDKPTIPKR-- 420
             K NK++   K++VVKPN      SG  RP K++ EQK       Q+K DK  I KR  
Sbjct: 361 LPKENKNEQVKKQEVVKPNKLSNTDSGPGRPPKVNMEQKVNNETKIQQKTDKVAIQKRQL 420

Query: 421 -SQQDNFKSSDEVAVQVKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGLGHRNP 476
             QQD FK SDEVAVQVKLEATKRKLQE YQQAENAK+QRT+QVMEL DLPKQGL  RNP
Sbjct: 421 TGQQDKFKCSDEVAVQVKLEATKRKLQERYQQAENAKRQRTVQVMELQDLPKQGLARRNP 444

The following BLAST results are available for this feature:

BLAST of CmoCh14G004970.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MD26B_ARATH	1.2e-77	44.20	Probable mediator of RNA polymerase II transcription subunit 26b OS=Arabidopsis ...	[more]
MD26A_ARATH	9.0e-57	39.07	Probable mediator of RNA polymerase II transcription subunit 26a OS=Arabidopsis ...	[more]
MD26C_ARATH	1.2e-16	30.32	Probable mediator of RNA polymerase II transcription subunit 26c OS=Arabidopsis ...	[more]

BLAST of CmoCh14G004970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBK9_CUCSA	1.7e-192	77.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G817210 PE=4 SV=1	[more]
M5VPN3_PRUPE	5.2e-128	59.68	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005771mg PE=4 SV=1	[more]
A0A067EEY5_CITSI	6.8e-128	59.72	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012904mg PE=4 SV=1	[more]
V4S8D9_9ROSI	2.6e-127	59.52	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011717mg PE=4 SV=1	[more]
A0A067ER24_CITSI	3.7e-126	59.13	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g012904mg PE=4 SV=1	[more]

BLAST of CmoCh14G004970.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05140.1	6.8e-79	44.20	Transcription elongation factor (TFIIS) family protein	[more]
AT3G10820.2	5.1e-58	39.07	Transcription elongation factor (TFIIS) family protein	[more]
AT5G09850.1	6.7e-18	30.32	Transcription elongation factor (TFIIS) family protein	[more]

BLAST of CmoCh14G004970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085053\|ref\|XP_008443218.1\|	3.5e-194	78.21	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cuc...	[more]
gi\|449437690\|ref\|XP_004136624.1\|	2.5e-192	77.60	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Cuc...	[more]
gi\|1009159736\|ref\|XP_015897974.1\|	4.5e-141	62.55	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Ziz...	[more]
gi\|645241950\|ref\|XP_008227322.1\|	5.7e-128	59.68	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b [Pru...	[more]
gi\|595803734\|ref\|XP_007202053.1\|	7.4e-128	59.68	hypothetical protein PRUPE_ppa005771mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003617	TFIIS/CRSP70_N_sub
IPR017923	TFIIS_N

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G004970	CmoCh14G004970	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G004970.1	CmoCh14G004970.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G004970.1.exon.9	CmoCh14G004970.1.exon.9	exon
CmoCh14G004970.1.exon.8	CmoCh14G004970.1.exon.8	exon
CmoCh14G004970.1.exon.7	CmoCh14G004970.1.exon.7	exon
CmoCh14G004970.1.exon.6	CmoCh14G004970.1.exon.6	exon
CmoCh14G004970.1.exon.5	CmoCh14G004970.1.exon.5	exon
CmoCh14G004970.1.exon.4	CmoCh14G004970.1.exon.4	exon
CmoCh14G004970.1.exon.3	CmoCh14G004970.1.exon.3	exon
CmoCh14G004970.1.exon.2	CmoCh14G004970.1.exon.2	exon
CmoCh14G004970.1.exon.1	CmoCh14G004970.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G004970.1.five_prime_UTR.1	CmoCh14G004970.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G004970.1.CDS.1	CmoCh14G004970.1.CDS.1	CDS
CmoCh14G004970.1.CDS.2	CmoCh14G004970.1.CDS.2	CDS
CmoCh14G004970.1.CDS.3	CmoCh14G004970.1.CDS.3	CDS
CmoCh14G004970.1.CDS.4	CmoCh14G004970.1.CDS.4	CDS
CmoCh14G004970.1.CDS.5	CmoCh14G004970.1.CDS.5	CDS
CmoCh14G004970.1.CDS.6	CmoCh14G004970.1.CDS.6	CDS
CmoCh14G004970.1.CDS.7	CmoCh14G004970.1.CDS.7	CDS
CmoCh14G004970.1.CDS.8	CmoCh14G004970.1.CDS.8	CDS
CmoCh14G004970.1.CDS.9	CmoCh14G004970.1.CDS.9	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G004970.1.three_prime_UTR.1	CmoCh14G004970.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003617	Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type	SMART	SM00509	TFS2_5	coord: 140..212 score: 1.2
IPR017923	Transcription factor IIS, N-terminal	GENE3D	G3DSA:1.20.930.10		coord: 133..218 score: 3.8
IPR017923	Transcription factor IIS, N-terminal	PFAM	PF08711	Med26	coord: 162..210 score: 8.8
IPR017923	Transcription factor IIS, N-terminal	PROFILE	PS51319	TFIIS_N	coord: 138..213 score: 21
IPR017923	Transcription factor IIS, N-terminal	unknown	SSF47676	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	coord: 135..218 score: 1.57
None	No IPR available	unknown	Coil	Coil	coord: 415..442 scor
None	No IPR available	PANTHER	PTHR15141	TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3	coord: 1..475 score: 1.5E
None	No IPR available	PANTHER	PTHR15141:SF40	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED	coord: 1..475 score: 1.5E