CmoCh13G001560.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G001560.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane protein, putative
Location	Cmo_Chr13 : 978678 .. 979091 (-)
Sequence length	414

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTTTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAACGCAAACCGAGCTATGTCAGCACAACCTAGCGTTTGA

mRNA sequence

ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTTTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAACGCAAACCGAGCTATGTCAGCACAACCTAGCGTTTGA

Coding sequence (CDS)

ATGACTCAAATGCTTACTTTCCTGTTCTGTCTCTCTTCCTTCACATTTCTTTCCATCGCCCAAGCCGAAGGCAGAGCCCCGCACGGCTTGGTATACGAGAGCCCGGTTGCCTTCTCCCCAATGGCATATGATTTCTTCCATCCAAGCACCCAGACTCCCAATGCCAAAGATCCATGTGGTGCATCCAAATGCTCCCCACTGCCCCTTGCAGCTCAAGTGCAATCTACTCCTGCAAAAGAAAGCAAATACTCCACAACAATCCAGAAAGGCACGCACCGTGTCGGGGCTGGGGGGATTCTGGGAATTGTGTTTGGCATCACATTTGCAGTGTTTTTGGCAATGGGAGTATACTATGTACTACGTACTCGCCAAGCCAACGCAAACCGAGCTATGTCAGCACAACCTAGCGTTTGA

Homology

[Close]

BLAST of CmoCh13G001560.1 vs. TrEMBL
Match: A0A0A0LV85_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G495260 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.1e-61
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 1


Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCL+SFTFLSIA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ P+ KDPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQVQSTPAKESKYSTTIQ   HRVGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRQANANRAMS-AQPS 137
           RTRQANANRAMS AQPS
Sbjct: 121 RTRQANANRAMSAAQPS 137

[Close]

BLAST of CmoCh13G001560.1 vs. TrEMBL
Match: A0A061GY53_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_042052 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 6.7e-36
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 1


Query: 8   LFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCGASKCSPL 67
           L  LSS   +S+A+A+ RAPHG+ YE+P+AFSP AY+FFHP T+ P+ ++PC AS CSPL
Sbjct: 46  LLLLSSLALVSLARAQDRAPHGIAYENPMAFSPSAYEFFHPKTREPDTQNPCAASNCSPL 105

Query: 68  PLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVLRTRQANA 127
           P+AAQV +  A E    +T Q   HR+GAGGI G+VFG+ FAV LAMG YYVL TR+ANA
Sbjct: 106 PMAAQVDTAKALEESKVSTQQISGHRLGAGGIAGVVFGLAFAVLLAMGAYYVLTTRRANA 165

Query: 128 NRAMSAQP 136
           NRA S QP
Sbjct: 166 NRANSVQP 173

[Close]

BLAST of CmoCh13G001560.1 vs. TrEMBL
Match: U5GGS3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22050g PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 8.7e-36
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 1


Query: 7   FLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCGA-SKCS 66
           FLFCLSS T L IA+A+ RAPHGLVYE PVAFSP A +FFHP TQ PN ++PC A S CS
Sbjct: 31  FLFCLSSLTILFIARAQDRAPHGLVYEKPVAFSPSAVEFFHPKTQEPNTENPCAASSSCS 90

Query: 67  PLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVLRTRQA 126
           P PLAAQ++ T   + K ST+ Q+G +++GAGGI G++ G+ FAV L MGVYYV  TR+A
Sbjct: 91  PFPLAAQLEDTDQTQGKISTS-QRGGNQLGAGGIAGVILGLAFAVLLTMGVYYVTITRKA 150

Query: 127 NANRAMSAQPS 137
           N NRA S QP+
Sbjct: 151 NINRANSDQPN 160

[Close]

BLAST of CmoCh13G001560.1 vs. TrEMBL
Match: A0A0D2QDG4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G107100 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.1e-35
Identity = 81/135 (60.00%), Postives = 101/135 (74.81%), Query Frame = 1


Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           M+ +L+FL  +S    LSIA  EGRAPHG+ YE+PVAFSP AY+FFHP  Q P+ K+PC 
Sbjct: 1   MSPLLSFLLHVSCLALLSIANGEGRAPHGIAYENPVAFSPSAYEFFHPKAQVPDTKNPCA 60

Query: 61  ASKCSPLPLAAQV-QSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYV 120
           AS CSPLP+AAQ+   T A ESK ST  + G H++GAGGI+G+VFG+ FAV LAMGVYYV
Sbjct: 61  ASSCSPLPIAAQMGDGTTALESKVSTQKESG-HQLGAGGIVGLVFGLAFAVLLAMGVYYV 120

Query: 121 LRTRQANANRAMSAQ 135
           L  R++NAN+A   Q
Sbjct: 121 LNIRRSNANKANYVQ 134

[Close]

BLAST of CmoCh13G001560.1 vs. TrEMBL
Match: K7LTE2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G067500 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.3e-34
Identity = 83/132 (62.88%), Postives = 98/132 (74.24%), Query Frame = 1


Query: 5   LTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCGASKC 64
           L+FLF L S   LSIA+ + RAPHGLVYESPVAF P AYDFFHP+ Q P  KDPC ASKC
Sbjct: 6   LSFLF-LISLALLSIARGQERAPHGLVYESPVAFPPAAYDFFHPNAQKPENKDPCVASKC 65

Query: 65  SPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVLRTRQ 124
           SPLPLAAQV +T   E+K STT QKG  ++G GG+ GI+  + FAV LAMG+YYV  TRQ
Sbjct: 66  SPLPLAAQVDATQIYENKASTT-QKGGKQIGGGGVAGIITAVAFAVLLAMGIYYVKVTRQ 125

Query: 125 ANANRAMSAQPS 137
           AN +RA ++  S
Sbjct: 126 ANMSRASNSVQS 135

[Close]

BLAST of CmoCh13G001560.1 vs. TAIR10
Match: AT2G28410.1 (AT2G28410.1 unknown protein)

HSP 1 Score: 93.6 bits (231), Expect = 1.0e-19
Identity = 52/115 (45.22%), Postives = 70/115 (60.87%), Query Frame = 1


Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAK-DPC 60
           MT     +F  SS    + A A+ RAPHGL YE+PVAFSP A+DFFH   + P+   +PC
Sbjct: 1   MTSKTCLVFFFSSLILTNFALAQDRAPHGLAYETPVAFSPSAFDFFHTQPENPDPTFNPC 60

Query: 61  GASKCSPLPLAAQVQSTPAKESKYS-TTIQKGTHR-VGAGGILGIVFGITFAVFL 113
             S CSPLP+AA+VQ   AK  +    +I  GT   +   G++GI+FG+ FAV +
Sbjct: 61  SESGCSPLPVAAKVQGASAKAQESDIVSISTGTRSGIEEHGVVGIIFGLAFAVMM 115

[Close]

BLAST of CmoCh13G001560.1 vs. TAIR10
Match: AT5G60650.1 (AT5G60650.1 unknown protein)

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-14
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 1


Query: 1   MTQMLTFLF-CLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPC 60
           +T  L F F CLS    +SIA +  R  HG  Y +P AFSP AYDFFHP +   +  +P 
Sbjct: 4   LTHSLLFFFSCLSMLLCVSIAGS--RPVHGPAYTNPSAFSPQAYDFFHPKSSLSDHNNPP 63

Query: 61  GAS----KCSPLPLAAQVQSTPAKESKYS----TTIQKGTHRVGAGGILGIVFGITFAVF 120
            +S      SP P    +    ++ SK S    TT +      G G  +G+V G++F  F
Sbjct: 64  KSSPSPLSLSPSPSKTSIVEPDSQGSKVSSDEHTTSESRREEEGRGETIGVVLGLSFIAF 123

Query: 121 LAMGVYYVLRTRQANANRAM 132
           L++G+Y+V++ ++AN  R +
Sbjct: 124 LSLGIYFVIKKQRANIIRTI 141

[Close]

BLAST of CmoCh13G001560.1 vs. NCBI nr
Match: gi|659115379|ref|XP_008457527.1| (PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo])

HSP 1 Score: 245.7 bits (626), Expect = 4.6e-62
Identity = 125/137 (91.24%), Postives = 130/137 (94.89%), Query Frame = 1


Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCLSSFTFLS+A+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ PN KDPCG
Sbjct: 1   MTRMLTFLFCLSSFTFLSVARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPNGKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQVQSTPA+ESKYSTTIQ   HRVGAGGILGIVFGITFAVFLAMGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPARESKYSTTIQNSKHRVGAGGILGIVFGITFAVFLAMGVYYVL 120

Query: 121 RTRQANANRAMS-AQPS 137
           RTRQANANRAMS AQPS
Sbjct: 121 RTRQANANRAMSAAQPS 137

[Close]

BLAST of CmoCh13G001560.1 vs. NCBI nr
Match: gi|778661360|ref|XP_011657962.1| (PREDICTED: uncharacterized protein LOC105435923 [Cucumis sativus])

HSP 1 Score: 243.0 bits (619), Expect = 3.0e-61
Identity = 124/137 (90.51%), Postives = 129/137 (94.16%), Query Frame = 1


Query: 1   MTQMLTFLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCG 60
           MT+MLTFLFCL+SFTFLSIA+A+GRAPHGLVYESPVAFSPMAYDFFHPSTQ P+ KDPCG
Sbjct: 1   MTRMLTFLFCLASFTFLSIARADGRAPHGLVYESPVAFSPMAYDFFHPSTQNPSGKDPCG 60

Query: 61  ASKCSPLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVL 120
            SKCSPLPLAAQVQSTPAKESKYSTTIQ   HRVGAGGILGIVFGITFAVFL MGVYYVL
Sbjct: 61  DSKCSPLPLAAQVQSTPAKESKYSTTIQSSNHRVGAGGILGIVFGITFAVFLTMGVYYVL 120

Query: 121 RTRQANANRAMS-AQPS 137
           RTRQANANRAMS AQPS
Sbjct: 121 RTRQANANRAMSAAQPS 137

[Close]

BLAST of CmoCh13G001560.1 vs. NCBI nr
Match: gi|657952768|ref|XP_008359212.1| (PREDICTED: uncharacterized protein LOC103422926 [Malus domestica])

HSP 1 Score: 162.5 bits (410), Expect = 5.1e-37
Identity = 84/131 (64.12%), Postives = 103/131 (78.63%), Query Frame = 1


Query: 7   FLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCGASKCSP 66
           FLF  +S TFLS+A AE RAPHGL  E+P AFSP AY+FFHP++Q PNAKDPC  S CSP
Sbjct: 8   FLF-FASLTFLSVAFAEERAPHGLAKENPTAFSPSAYNFFHPTSQNPNAKDPCVESNCSP 67

Query: 67  LPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVLRTRQAN 126
           LP+AAQV+ST A ES++ST+ Q G  R GAGG+ GI+FG+ FAVF+AMGVYYVL TR+AN
Sbjct: 68  LPVAAQVRSTEAHESRFSTS-QNGRARFGAGGVAGIMFGLAFAVFMAMGVYYVLVTRRAN 127

Query: 127 ANRAMSAQPSV 138
            +R  + +P V
Sbjct: 128 MSRTNTVKPDV 136

[Close]

BLAST of CmoCh13G001560.1 vs. NCBI nr
Match: gi|590590455|ref|XP_007016739.1| (Uncharacterized protein TCM_042052 [Theobroma cacao])

HSP 1 Score: 158.3 bits (399), Expect = 9.6e-36
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 1


Query: 8   LFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCGASKCSPL 67
           L  LSS   +S+A+A+ RAPHG+ YE+P+AFSP AY+FFHP T+ P+ ++PC AS CSPL
Sbjct: 46  LLLLSSLALVSLARAQDRAPHGIAYENPMAFSPSAYEFFHPKTREPDTQNPCAASNCSPL 105

Query: 68  PLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVLRTRQANA 127
           P+AAQV +  A E    +T Q   HR+GAGGI G+VFG+ FAV LAMG YYVL TR+ANA
Sbjct: 106 PMAAQVDTAKALEESKVSTQQISGHRLGAGGIAGVVFGLAFAVLLAMGAYYVLTTRRANA 165

Query: 128 NRAMSAQP 136
           NRA S QP
Sbjct: 166 NRANSVQP 173

[Close]

BLAST of CmoCh13G001560.1 vs. NCBI nr
Match: gi|566167949|ref|XP_006384901.1| (hypothetical protein POPTR_0004s22050g [Populus trichocarpa])

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-35
Identity = 81/131 (61.83%), Postives = 99/131 (75.57%), Query Frame = 1


Query: 7   FLFCLSSFTFLSIAQAEGRAPHGLVYESPVAFSPMAYDFFHPSTQTPNAKDPCGA-SKCS 66
           FLFCLSS T L IA+A+ RAPHGLVYE PVAFSP A +FFHP TQ PN ++PC A S CS
Sbjct: 31  FLFCLSSLTILFIARAQDRAPHGLVYEKPVAFSPSAVEFFHPKTQEPNTENPCAASSSCS 90

Query: 67  PLPLAAQVQSTPAKESKYSTTIQKGTHRVGAGGILGIVFGITFAVFLAMGVYYVLRTRQA 126
           P PLAAQ++ T   + K ST+ Q+G +++GAGGI G++ G+ FAV L MGVYYV  TR+A
Sbjct: 91  PFPLAAQLEDTDQTQGKISTS-QRGGNQLGAGGIAGVILGLAFAVLLTMGVYYVTITRKA 150

Query: 127 NANRAMSAQPS 137
           N NRA S QP+
Sbjct: 151 NINRANSDQPN 160

The following BLAST results are available for this feature:

BLAST of CmoCh13G001560.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G001560.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LV85_CUCSA	2.1e-61	90.51	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G495260 PE=4 SV=1	[more]
A0A061GY53_THECC	6.7e-36	60.16	Uncharacterized protein OS=Theobroma cacao GN=TCM_042052 PE=4 SV=1	[more]
U5GGS3_POPTR	8.7e-36	61.83	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22050g PE=4 SV=1	[more]
A0A0D2QDG4_GOSRA	1.1e-35	60.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G107100 PE=4 SV=1	[more]
K7LTE2_SOYBN	1.3e-34	62.88	Uncharacterized protein OS=Glycine max GN=GLYMA_12G067500 PE=4 SV=1	[more]

BLAST of CmoCh13G001560.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G28410.1	1.0e-19	45.22	unknown protein	[more]
AT5G60650.1	1.7e-14	35.71	unknown protein	[more]

BLAST of CmoCh13G001560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115379\|ref\|XP_008457527.1\|	4.6e-62	91.24	PREDICTED: uncharacterized protein LOC103497198 [Cucumis melo]	[more]
gi\|778661360\|ref\|XP_011657962.1\|	3.0e-61	90.51	PREDICTED: uncharacterized protein LOC105435923 [Cucumis sativus]	[more]
gi\|657952768\|ref\|XP_008359212.1\|	5.1e-37	64.12	PREDICTED: uncharacterized protein LOC103422926 [Malus domestica]	[more]
gi\|590590455\|ref\|XP_007016739.1\|	9.6e-36	60.16	Uncharacterized protein TCM_042052 [Theobroma cacao]	[more]
gi\|566167949\|ref\|XP_006384901.1\|	1.3e-35	61.83	hypothetical protein POPTR_0004s22050g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh13G001560	CmoCh13G001560	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh13G001560.1	CmoCh13G001560.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G001560.1.CDS.1	CmoCh13G001560.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G001560.1.exon.1	CmoCh13G001560.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35718	FAMILY NOT NAMED	coord: 1..136 score: 1.8