CmoCh13G001050.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G001050.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr13 : 585629 .. 587189 (-)
Sequence length	930

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACCTTCATCCTCACCAATACAGAAATTTGATAGGCCATCACCACATCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCAAGCCTTTCTCAACATAGATCCATTTCACCATATGATCAGAATTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGGTACTTCTCTTTTCCTGTATTAAGCTTGCATCCTGTGTGATGGTTTCTACCTACTTAGCTGCATGTTATTAATCTGTTGATCAAAACTGCTAGATGGTAAGAGTACTAGCCATCTATAGAACAGTAAATCTGCAGGCTGCTGTTGAAACTTTTTAGTTCTTGAATTTGTGAATTAATTTAACTTGATCTTTAGTGAAGCATCTAAAGAAAATTAGTTTGGATTCTTTTACTATTTGTTTGGCTCATATGATTGTGATTTGCTTTGCTGATGGGTTTTTTGTGATGTCCCACGTTGGTTGGGGAGGAGAACAAACCACCATTTATAAGGGTGTGGAAACCTTCCCCTAGCAGACGTGTTTTAAAGCCTTGAGGGGAAGCCCGAAAGGAAAAGCCCAAAGAGGACAATATTTGCTAACGGTGGATCTGGGTCGTTACAGTTTTATTCATCTGTTTTATGATAAGTTCACTCACCTGGAGTGTTAGTTTATGGACTTGCCCCTGATTCTTTGGAATTTAGAAAGAAATATCAGGAACTAAGGATCCTCGTAGAAGGGTATTCTGTTATTTTAATCGTTTATACGTGAAATTACAGGCCTGTTACTCTTGTTTTTGTTTTATATTTATTTTATAGTGATGAAAGAAGCTACTCACGCCGAGGTAAAGCCAAGGAAACTGAGGCTCGGACTGTCGAAAATAATAAGGGTAGGAAAAGACACAGAAGATCAGACAGGAGTGACACTTCTTCGGAGAGAAGACACAGAAGATTAGACAGGCGTGACACTTATTCGGAGAGAAGACACAGAAGATCAGACAGGCGCGTCACTTCTTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCAGGAGAAGGAAGGAGGAGGAGGAGGAGAGGAGGTGTTGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATGGACGTAAAAAGGGAAAGCGGCGTGCTGAGAAGACGAAAGCTAAGACTCTCAGTGATGATTGCTCGGACGATGGTCGAGCTGTAAGGGAAGTGTGTCGTCCGAGTGATGGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTCGAGTTGAGGAATAAGGCACTGGAAGCATTCATTGCAAGGAAAGGGAGAAGGCATAATAAATCTTCAGAATAGTCTTTTCCTTCCACATAAGAGCTCTTGATAAATGGTGATTTCTTTGATGTTCATTTGAATGCAAACTCAACACAGATCTTTCTCCTTGCCTTTCTTGAGCTTGTTTTGGAGTTCTTTTAGAATGGCAGCCTTACCTTAGCTACTTAGAGAAAATCGTATCGAATCTTTAGCTCAATGTTGCATAGACGTTTAAAAAGT

mRNA sequence

ATGTCACCTTCATCCTCACCAATACAGAAATTTGATAGGCCATCACCACATCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCAAGCCTTTCTCAACATAGATCCATTTCACCATATGATCAGAATTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGTGATGAAAGAAGCTACTCACGCCGAGGTAAAGCCAAGGAAACTGAGGCTCGGACTGTCGAAAATAATAAGGGTAGGAAAAGACACAGAAGATCAGACAGGAGTGACACTTCTTCGGAGAGAAGACACAGAAGATTAGACAGGCGTGACACTTATTCGGAGAGAAGACACAGAAGATCAGACAGGCGCGTCACTTCTTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCAGGAGAAGGAAGGAGGAGGAGGAGGAGAGGAGGTGTTGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATGGACGTAAAAAGGGAAAGCGGCGTGCTGAGAAGACGAAAGCTAAGACTCTCAGTGATGATTGCTCGGACGATGGTCGAGCTGTAAGGGAAGTGTGTCGTCCGAGTGATGGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTCGAGTTGAGGAATAAGGCACTGGAAGCATTCATTGCAAGGAAAGGGAGAAGGCATAATAAATCTTCAGAATAGTCTTTTCCTTCCACATAAGAGCTCTTGATAAATGGTGATTTCTTTGATGTTCATTTGAATGCAAACTCAACACAGATCTTTCTCCTTGCCTTTCTTGAGCTTGTTTTGGAGTTCTTTTAGAATGGCAGCCTTACCTTAGCTACTTAGAGAAAATCGTATCGAATCTTTAGCTCAATGTTGCATAGACGTTTAAAAAGT

Coding sequence (CDS)

ATGTCACCTTCATCCTCACCAATACAGAAATTTGATAGGCCATCACCACATCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCAAGCCTTTCTCAACATAGATCCATTTCACCATATGATCAGAATTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGTGATGAAAGAAGCTACTCACGCCGAGGTAAAGCCAAGGAAACTGAGGCTCGGACTGTCGAAAATAATAAGGGTAGGAAAAGACACAGAAGATCAGACAGGAGTGACACTTCTTCGGAGAGAAGACACAGAAGATTAGACAGGCGTGACACTTATTCGGAGAGAAGACACAGAAGATCAGACAGGCGCGTCACTTCTTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCAGGAGAAGGAAGGAGGAGGAGGAGGAGAGGAGGTGTTGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATGGACGTAAAAAGGGAAAGCGGCGTGCTGAGAAGACGAAAGCTAAGACTCTCAGTGATGATTGCTCGGACGATGGTCGAGCTGTAAGGGAAGTGTGTCGTCCGAGTGATGGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTCGAGTTGAGGAATAAGGCACTGGAAGCATTCATTGCAAGGAAAGGGAGAAGGCATAATAAATCTTCAGAATAG

Homology

[Close]

BLAST of CmoCh13G001050.1 vs. TrEMBL
Match: A0A0A0LVE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G524700 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-23
Identity = 118/232 (50.86%), Postives = 145/232 (62.50%), Query Frame = 1


Query: 14  PSP----HPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVKVKSPRVRTS 73
           PSP    HP +R  P SP   K SS  +  S+    Q   S+E                 
Sbjct: 669 PSPGSDKHP-QRDVPGSPNHKKSSSAHKEPSLVEEQQLSYSREDMKH------------- 728

Query: 74  DERSYSRRGKAKE-TEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTYSERRHRRS 133
           DE+S+SRR KAKE TE  ++ENN  R+     D SD+  E  ++R  +  +  ++RHR+S
Sbjct: 729 DEKSHSRRSKAKEDTELPSLENNNNRR-----DDSDSDLEEGYKR--KAGSKEKKRHRKS 788

Query: 134 DRRVTS--SEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRRAEKTKA 193
           DRR TS  SEDSYDSELERKE+RRRK  +EERR  KEKKRQ+REE  RKK +RRA KTKA
Sbjct: 789 DRRDTSSDSEDSYDSELERKESRRRK--KEERRLRKEKKRQKREERRRKKEERRAGKTKA 848

Query: 194 KTLSDDCS-DDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRR 238
           K LSD+ S DD +A +E    SD A EAEQ+RLE+ELR KALE+F ARKG R
Sbjct: 849 KNLSDNYSDDDDQAAKEESYHSDDADEAEQKRLEIELRKKALESFNARKGTR 877

[Close]

BLAST of CmoCh13G001050.1 vs. TrEMBL
Match: B9S3E8_RICCO (Copper ion binding protein, putative OS=Ricinus communis GN=RCOM_0733150 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 3.6e-08
Identity = 91/228 (39.91%), Postives = 133/228 (58.33%), Query Frame = 1


Query: 19  LERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVKVKSPRVRTSDERSYSRRG 78
           +E R      + ++ S  +  S +P D N S K  G R  V     +V+TSDER  S   
Sbjct: 639 MESRKRDQETKSEKGSQKRVYSGTP-DGNTSPKSPGERQQVTYTG-KVQTSDERDRSHSN 698

Query: 79  KAKETEARTVENNK--GRKRHRRSDRS-DTSSERRHRRLDRRDTYSERRHRRSDRRVTSS 138
             K+  +R  E  K    K  RR+    D+ S+   +R  R +   +R+H+RS R   +S
Sbjct: 699 NIKDDRSRRSETKKILVEKIDRRNGGGFDSGSDESGKR--RIENKEKRKHKRSHREEVAS 758

Query: 139 EDSY--DSELE-RKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRRAEKTKAKTLSD- 198
           +D Y  DSE+E +KEA+RR++EE++ R  KE+KR+RREE  R++ +RRAEK K+K L D 
Sbjct: 759 DDGYSSDSEIEDKKEAKRRRKEEKKLR--KEEKRRRREERRRRREERRAEKLKSKNLKDA 818

Query: 199 DCSDDGRAVREVCRPSDGA-YEAEQRRLEVELRNKALEAFIARKGRRH 239
           + S+D  A R    PSDG   ++EQ++LE+ELR KALE+  A+KG  H
Sbjct: 819 NSSEDEHAGRRDSYPSDGEDTQSEQKKLEIELRKKALESLKAKKGINH 860

[Close]

BLAST of CmoCh13G001050.1 vs. TrEMBL
Match: A0A0B2RJM0_GLYSO (Serine/arginine repetitive matrix protein 1 OS=Glycine soja GN=glysoja_028948 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 86/217 (39.63%), Postives = 129/217 (59.45%), Query Frame = 1


Query: 30  LKRSSLSQHRSISPYDQNYSSKERGNRS-PVKVKSPRVRTSDERSYSRRGKAK------E 89
           +KR   S+  +  P  ++  +KE  +R  P +  +  V+ SD++  SR   AK      +
Sbjct: 741 IKRDKSSRQGNEFPAQKSSINKETFSREKPQESYAVDVKKSDDKDQSRSNYAKSSGRHHK 800

Query: 90  TEARTVENNKG-RKRHRRSDRSDTSSERRHRRLDRRDTYSERRHRRSDRRVTSSEDSY-- 149
           +EA      KG R  H  S  S +    +HRR  +      +RH+RS+++  SS++ Y  
Sbjct: 801 SEATQDLVGKGDRVNHSASYDSVSEDSGKHRREGK----DRKRHKRSEKKYASSDEDYSD 860

Query: 150 DSELE-RKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRRAEKTKAKTLSDDCSDDGR 209
           DSELE RKEA+RR++EE++ R  KE+KR+RREE  R++ +RRAEK K K+ +DD SDD  
Sbjct: 861 DSELEDRKEAKRRRKEEKKLR--KEEKRRRREEKRRRREERRAEKLKMKSKTDDISDDEE 920

Query: 210 AVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKG 236
           A +     SD   E EQ++LE+ELRNKALE+  A++G
Sbjct: 921 AKQMGYHQSDS--EDEQKKLEIELRNKALESLKAKRG 949

[Close]

BLAST of CmoCh13G001050.1 vs. TrEMBL
Match: I1LQL7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G059700 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 86/217 (39.63%), Postives = 129/217 (59.45%), Query Frame = 1


Query: 30  LKRSSLSQHRSISPYDQNYSSKERGNRS-PVKVKSPRVRTSDERSYSRRGKAK------E 89
           +KR   S+  +  P  ++  +KE  +R  P +  +  V+ SD++  SR   AK      +
Sbjct: 679 IKRDKSSRQDNEFPAQKSSINKETFSREKPQESYAVDVKKSDDKDQSRSNYAKSSGRHHK 738

Query: 90  TEARTVENNKG-RKRHRRSDRSDTSSERRHRRLDRRDTYSERRHRRSDRRVTSSEDSY-- 149
           +EA      KG R  H  S  S +    +HRR  +      +RH+RS+++  SS++ Y  
Sbjct: 739 SEATQDLVGKGDRVNHSASYDSVSEDSGKHRREGK----DRKRHKRSEKKYASSDEDYSD 798

Query: 150 DSELE-RKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRRAEKTKAKTLSDDCSDDGR 209
           DSELE RKEA+RR++EE++ R  KE+KR+RREE  R++ +RRAEK K K+ +DD SDD  
Sbjct: 799 DSELEDRKEAKRRRKEEKKLR--KEEKRRRREEKRRRREERRAEKLKMKSKTDDISDDEE 858

Query: 210 AVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKG 236
           A +     SD   E EQ++LE+ELRNKALE+  A++G
Sbjct: 859 AKQMGYHQSDS--EDEQKKLEIELRNKALESLKAKRG 887

[Close]

BLAST of CmoCh13G001050.1 vs. TrEMBL
Match: V4SH69_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030390mg PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.3e-07
Identity = 86/242 (35.54%), Postives = 137/242 (56.61%), Query Frame = 1


Query: 13  RPSPHPLERRSPSSPA--RLKR-----SSLSQHRSISPYDQNYSSKERGNRSPVKVKSPR 72
           R SP  +  +   SP   RL R      +  Q RS++ Y+ + S   + +  P + K   
Sbjct: 614 RGSPVQIRCKKEHSPGSERLSRRGGRPETFEQQRSLALYEGSLSGDRQRSTYPGESK--- 673

Query: 73  VRTSDERSYSRRGKAKETEARTVENNKGRK-----RHRRSDRSDTSSERRHRRLDRRDTY 132
              S+ER+ S R   K+++ R+   N   +     ++ RSD  D+ SE   +   +    
Sbjct: 674 --ISEERNRSYRNNGKDSDGRSKTENATMEAGNVDKNNRSDSFDSGSEENGKH--KTKIK 733

Query: 133 SERRHRRSDRRVTSSE--DSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGK 192
            +R+H++  R   +S+  +SYDSE+++K+A+RR++EE++ R  +E+KR+RR+E  R+K +
Sbjct: 734 DKRKHKKHGREEVASDGDNSYDSEIDKKDAKRRRKEEKKLR--REEKRRRRDERRRRKEE 793

Query: 193 RRAEKTKAKTLSD-DCSDDGRAVREVCRPSDG-AYEAEQRRLEVELRNKALEAFIARKGR 239
           RRA K K K  SD D SDD  A R   RPSD    E++Q+RLE+ELRNKALE+  A++  
Sbjct: 794 RRAAKLKMKNQSDADASDDEHAPRREYRPSDDEETESDQKRLEIELRNKALESIKAKRNS 846

[Close]

BLAST of CmoCh13G001050.1 vs. NCBI nr
Match: gi|449455178|ref|XP_004145330.1| (PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis sativus])

HSP 1 Score: 116.7 bits (291), Expect = 5.7e-23
Identity = 118/232 (50.86%), Postives = 145/232 (62.50%), Query Frame = 1


Query: 14  PSP----HPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVKVKSPRVRTS 73
           PSP    HP +R  P SP   K SS  +  S+    Q   S+E                 
Sbjct: 669 PSPGSDKHP-QRDVPGSPNHKKSSSAHKEPSLVEEQQLSYSREDMKH------------- 728

Query: 74  DERSYSRRGKAKE-TEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTYSERRHRRS 133
           DE+S+SRR KAKE TE  ++ENN  R+     D SD+  E  ++R  +  +  ++RHR+S
Sbjct: 729 DEKSHSRRSKAKEDTELPSLENNNNRR-----DDSDSDLEEGYKR--KAGSKEKKRHRKS 788

Query: 134 DRRVTS--SEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRRAEKTKA 193
           DRR TS  SEDSYDSELERKE+RRRK  +EERR  KEKKRQ+REE  RKK +RRA KTKA
Sbjct: 789 DRRDTSSDSEDSYDSELERKESRRRK--KEERRLRKEKKRQKREERRRKKEERRAGKTKA 848

Query: 194 KTLSDDCS-DDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRR 238
           K LSD+ S DD +A +E    SD A EAEQ+RLE+ELR KALE+F ARKG R
Sbjct: 849 KNLSDNYSDDDDQAAKEESYHSDDADEAEQKRLEIELRKKALESFNARKGTR 877

[Close]

BLAST of CmoCh13G001050.1 vs. NCBI nr
Match: gi|659115223|ref|XP_008457448.1| (PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis melo])

HSP 1 Score: 112.8 bits (281), Expect = 8.2e-22
Identity = 109/227 (48.02%), Postives = 138/227 (60.79%), Query Frame = 1


Query: 14  PSPHPLERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVKVKSPRVRTSDERS 73
           PSP   +      P    + S S H+  S  ++   S  R                DE+S
Sbjct: 687 PSPGSDKHPQREVPGSDHKKSSSSHKEPSLVEEQQPSYSREGMK-----------QDEKS 746

Query: 74  YSRRGKAKETEARTVENNKGRKRHRRSDRSDTSSERRHRRLDRRDTYSERRHRRSDRRVT 133
           +SRR KAK+TE  ++ENN       + D SD+  E  ++R  +  +  ++RHR+SDRR T
Sbjct: 747 HSRRSKAKDTELPSLENNN------QHDDSDSDLEEGYKR--KTGSKEKKRHRKSDRRDT 806

Query: 134 S--SEDSYDSELERKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRRAEKTKAKTLSD 193
           S  SEDSYDSELERKE+RRRK  +EERR  KEKKRQ+REE  RKK +RRA KTKAK LSD
Sbjct: 807 SSDSEDSYDSELERKESRRRK--KEERRLRKEKKRQKREERRRKKEERRAGKTKAKNLSD 866

Query: 194 DCS-DDGRAVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKGRR 238
           + S DD +  +E    SD A EAEQ+RLE+ELR KALE+F ARKG R
Sbjct: 867 NYSDDDDQVAKEESYHSDDADEAEQKRLEIELRKKALESFNARKGTR 892

[Close]

BLAST of CmoCh13G001050.1 vs. NCBI nr
Match: gi|223540359|gb|EEF41930.1| (copper ion binding protein, putative [Ricinus communis])

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 91/228 (39.91%), Postives = 133/228 (58.33%), Query Frame = 1


Query: 19  LERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVKVKSPRVRTSDERSYSRRG 78
           +E R      + ++ S  +  S +P D N S K  G R  V     +V+TSDER  S   
Sbjct: 639 MESRKRDQETKSEKGSQKRVYSGTP-DGNTSPKSPGERQQVTYTG-KVQTSDERDRSHSN 698

Query: 79  KAKETEARTVENNK--GRKRHRRSDRS-DTSSERRHRRLDRRDTYSERRHRRSDRRVTSS 138
             K+  +R  E  K    K  RR+    D+ S+   +R  R +   +R+H+RS R   +S
Sbjct: 699 NIKDDRSRRSETKKILVEKIDRRNGGGFDSGSDESGKR--RIENKEKRKHKRSHREEVAS 758

Query: 139 EDSY--DSELE-RKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRRAEKTKAKTLSD- 198
           +D Y  DSE+E +KEA+RR++EE++ R  KE+KR+RREE  R++ +RRAEK K+K L D 
Sbjct: 759 DDGYSSDSEIEDKKEAKRRRKEEKKLR--KEEKRRRREERRRRREERRAEKLKSKNLKDA 818

Query: 199 DCSDDGRAVREVCRPSDGA-YEAEQRRLEVELRNKALEAFIARKGRRH 239
           + S+D  A R    PSDG   ++EQ++LE+ELR KALE+  A+KG  H
Sbjct: 819 NSSEDEHAGRRDSYPSDGEDTQSEQKKLEIELRKKALESLKAKKGINH 860

[Close]

BLAST of CmoCh13G001050.1 vs. NCBI nr
Match: gi|1000963378|ref|XP_015575507.1| (PREDICTED: serine/arginine repetitive matrix protein 1 [Ricinus communis])

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 91/228 (39.91%), Postives = 133/228 (58.33%), Query Frame = 1


Query: 19  LERRSPSSPARLKRSSLSQHRSISPYDQNYSSKERGNRSPVKVKSPRVRTSDERSYSRRG 78
           +E R      + ++ S  +  S +P D N S K  G R  V     +V+TSDER  S   
Sbjct: 697 MESRKRDQETKSEKGSQKRVYSGTP-DGNTSPKSPGERQQVTYTG-KVQTSDERDRSHSN 756

Query: 79  KAKETEARTVENNK--GRKRHRRSDRS-DTSSERRHRRLDRRDTYSERRHRRSDRRVTSS 138
             K+  +R  E  K    K  RR+    D+ S+   +R  R +   +R+H+RS R   +S
Sbjct: 757 NIKDDRSRRSETKKILVEKIDRRNGGGFDSGSDESGKR--RIENKEKRKHKRSHREEVAS 816

Query: 139 EDSY--DSELE-RKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRRAEKTKAKTLSD- 198
           +D Y  DSE+E +KEA+RR++EE++ R  KE+KR+RREE  R++ +RRAEK K+K L D 
Sbjct: 817 DDGYSSDSEIEDKKEAKRRRKEEKKLR--KEEKRRRREERRRRREERRAEKLKSKNLKDA 876

Query: 199 DCSDDGRAVREVCRPSDGA-YEAEQRRLEVELRNKALEAFIARKGRRH 239
           + S+D  A R    PSDG   ++EQ++LE+ELR KALE+  A+KG  H
Sbjct: 877 NSSEDEHAGRRDSYPSDGEDTQSEQKKLEIELRKKALESLKAKKGINH 918

[Close]

BLAST of CmoCh13G001050.1 vs. NCBI nr
Match: gi|734402670|gb|KHN32153.1| (Serine/arginine repetitive matrix protein 1 [Glycine soja])

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 86/217 (39.63%), Postives = 129/217 (59.45%), Query Frame = 1


Query: 30  LKRSSLSQHRSISPYDQNYSSKERGNRS-PVKVKSPRVRTSDERSYSRRGKAK------E 89
           +KR   S+  +  P  ++  +KE  +R  P +  +  V+ SD++  SR   AK      +
Sbjct: 741 IKRDKSSRQGNEFPAQKSSINKETFSREKPQESYAVDVKKSDDKDQSRSNYAKSSGRHHK 800

Query: 90  TEARTVENNKG-RKRHRRSDRSDTSSERRHRRLDRRDTYSERRHRRSDRRVTSSEDSY-- 149
           +EA      KG R  H  S  S +    +HRR  +      +RH+RS+++  SS++ Y  
Sbjct: 801 SEATQDLVGKGDRVNHSASYDSVSEDSGKHRREGK----DRKRHKRSEKKYASSDEDYSD 860

Query: 150 DSELE-RKEARRRKEEEEERRCWKEKKRQRREEHGRKKGKRRAEKTKAKTLSDDCSDDGR 209
           DSELE RKEA+RR++EE++ R  KE+KR+RREE  R++ +RRAEK K K+ +DD SDD  
Sbjct: 861 DSELEDRKEAKRRRKEEKKLR--KEEKRRRREEKRRRREERRAEKLKMKSKTDDISDDEE 920

Query: 210 AVREVCRPSDGAYEAEQRRLEVELRNKALEAFIARKG 236
           A +     SD   E EQ++LE+ELRNKALE+  A++G
Sbjct: 921 AKQMGYHQSDS--EDEQKKLEIELRNKALESLKAKRG 949

The following BLAST results are available for this feature:

BLAST of CmoCh13G001050.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G001050.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVE0_CUCSA	3.9e-23	50.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G524700 PE=4 SV=1	[more]
B9S3E8_RICCO	3.6e-08	39.91	Copper ion binding protein, putative OS=Ricinus communis GN=RCOM_0733150 PE=4 SV...	[more]
A0A0B2RJM0_GLYSO	1.4e-07	39.63	Serine/arginine repetitive matrix protein 1 OS=Glycine soja GN=glysoja_028948 PE...	[more]
I1LQL7_SOYBN	1.4e-07	39.63	Uncharacterized protein OS=Glycine max GN=GLYMA_12G059700 PE=4 SV=1	[more]
V4SH69_9ROSI	2.3e-07	35.54	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10030390mg PE=4 SV=1	[more]

BLAST of CmoCh13G001050.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh13G001050.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449455178\|ref\|XP_004145330.1\|	5.7e-23	50.86	PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis sativus]	[more]
gi\|659115223\|ref\|XP_008457448.1\|	8.2e-22	48.02	PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis melo]	[more]
gi\|223540359\|gb\|EEF41930.1\|	5.1e-08	39.91	copper ion binding protein, putative [Ricinus communis]	[more]
gi\|1000963378\|ref\|XP_015575507.1\|	5.1e-08	39.91	PREDICTED: serine/arginine repetitive matrix protein 1 [Ricinus communis]	[more]
gi\|734402670\|gb\|KHN32153.1\|	2.0e-07	39.63	Serine/arginine repetitive matrix protein 1 [Glycine soja]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh13G001050	CmoCh13G001050	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh13G001050.1	CmoCh13G001050.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G001050.1.three_prime_UTR.1	CmoCh13G001050.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G001050.1.CDS.2	CmoCh13G001050.1.CDS.2	CDS
CmoCh13G001050.1.CDS.1	CmoCh13G001050.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh13G001050.1.exon.2	CmoCh13G001050.1.exon.2	exon
CmoCh13G001050.1.exon.1	CmoCh13G001050.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 136..171 scor