CmoCh12G006410.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G006410.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	F-box protein
Location	Cmo_Chr12 : 4092203 .. 4092949 (-)
Sequence length	747

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGGGAAATTTTGAATCTAGTTTTTCCGTTGTTGGAAGACGTGGACCTTGCTTCATGCATGGCAGTATCCAGAGAGTGGAGAGACGTAGCTCGAGATGATTACTTTTGGAAATGCTTGTGCATTAAGAGGTGGCCTTCAACCTACAAAATGTCTAATTTTCCGACTGGGACGTATTATAAACTATATCGAAATTCTTACCAATGTCCTAATAGTCGACGTCTTCTCTCTCCTCGACTTTCGTTTGATGATTTAGAGTTTTTTATTGACATTTGGAGCGAAGGCAATTTAGTCTTCTCAAAGGTGGTTCCGGGTAAAGTCCTCCAAGATGGTGTTAAGAACCCAACGCCTCGTACGATTAATGTGCTTAGTTATCTATTAGAAGGCCCGGGGTTCAAGATGACTCTAGCAGTTGAGCCAGGGTTCTCAATTCCTATGTGTGATACGATCGGTGTATCCGTGATTGTGGGATACAAGGATTCTAGTAAAGTTGCTCAAATAGTCAATAAATCTATATTCGATTACGTCGATCAAACATCTTGCAGGGCATTTTATTTTGACTACCTTAATTTTCCACATCTCTACCCTCTTGCGTCTGGGATTCGAGTCTGCATCTCATTTCTTTTCTTGGGCAATGGAAATGGTGATGTAGCTGAAGTTTCTGGAATAGTAATGGATTTCAGTGATGTTGCAAACACAAAGGAGGAGGTATTATGTCTTTTGGAGCGGCTCGATTGGAAATGA

mRNA sequence

ATGGCATGGGAAATTTTGAATCTAGTTTTTCCGTTGTTGGAAGACGTGGACCTTGCTTCATGCATGGCAGTATCCAGAGAGTGGAGAGACGTAGCTCGAGATGATTACTTTTGGAAATGCTTGTGCATTAAGAGGTGGCCTTCAACCTACAAAATGTCTAATTTTCCGACTGGGACGTATTATAAACTATATCGAAATTCTTACCAATGTCCTAATAGTCGACGTCTTCTCTCTCCTCGACTTTCGTTTGATGATTTAGAGTTTTTTATTGACATTTGGAGCGAAGGCAATTTAGTCTTCTCAAAGGTGGTTCCGGGTAAAGTCCTCCAAGATGGTGTTAAGAACCCAACGCCTCGTACGATTAATGTGCTTAGTTATCTATTAGAAGGCCCGGGGTTCAAGATGACTCTAGCAGTTGAGCCAGGGTTCTCAATTCCTATGTGTGATACGATCGGTGTATCCGTGATTGTGGGATACAAGGATTCTAGTAAAGTTGCTCAAATAGTCAATAAATCTATATTCGATTACGTCGATCAAACATCTTGCAGGGCATTTTATTTTGACTACCTTAATTTTCCACATCTCTACCCTCTTGCGTCTGGGATTCGAGTCTGCATCTCATTTCTTTTCTTGGGCAATGGAAATGGTGATGTAGCTGAAGTTTCTGGAATAGTAATGGATTTCAGTGATGTTGCAAACACAAAGGAGGAGGTATTATGTCTTTTGGAGCGGCTCGATTGGAAATGA

Coding sequence (CDS)

ATGGCATGGGAAATTTTGAATCTAGTTTTTCCGTTGTTGGAAGACGTGGACCTTGCTTCATGCATGGCAGTATCCAGAGAGTGGAGAGACGTAGCTCGAGATGATTACTTTTGGAAATGCTTGTGCATTAAGAGGTGGCCTTCAACCTACAAAATGTCTAATTTTCCGACTGGGACGTATTATAAACTATATCGAAATTCTTACCAATGTCCTAATAGTCGACGTCTTCTCTCTCCTCGACTTTCGTTTGATGATTTAGAGTTTTTTATTGACATTTGGAGCGAAGGCAATTTAGTCTTCTCAAAGGTGGTTCCGGGTAAAGTCCTCCAAGATGGTGTTAAGAACCCAACGCCTCGTACGATTAATGTGCTTAGTTATCTATTAGAAGGCCCGGGGTTCAAGATGACTCTAGCAGTTGAGCCAGGGTTCTCAATTCCTATGTGTGATACGATCGGTGTATCCGTGATTGTGGGATACAAGGATTCTAGTAAAGTTGCTCAAATAGTCAATAAATCTATATTCGATTACGTCGATCAAACATCTTGCAGGGCATTTTATTTTGACTACCTTAATTTTCCACATCTCTACCCTCTTGCGTCTGGGATTCGAGTCTGCATCTCATTTCTTTTCTTGGGCAATGGAAATGGTGATGTAGCTGAAGTTTCTGGAATAGTAATGGATTTCAGTGATGTTGCAAACACAAAGGAGGAGGTATTATGTCTTTTGGAGCGGCTCGATTGGAAATGA

Homology

[Close]

BLAST of CmoCh12G006410.1 vs. Swiss-Prot
Match: FB270_ARATH (F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.7e-67
Identity = 129/249 (51.81%), Postives = 172/249 (69.08%), Query Frame = 1


Query: 4   EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTYYKL 63
           E+L  VFPLLE  DLASCM V ++WRD+ARDD++WKC C K+WPS  K    PT TYYK+
Sbjct: 5   EVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYYKM 64

Query: 64  YRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRTINV 123
           Y+   +   +R L  PRLSF++LEFFIDIWSE  LVFS ++PG  L++G++       NV
Sbjct: 65  YQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGISNV 124

Query: 124 LSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCR 183
           L   L  P +KM +  EP F+IP+  ++ VSV+V   DS KVA+I+N+S+FDY+D++S R
Sbjct: 125 LRTHLGRPDYKMVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSYR 184

Query: 184 AFYFDYLNFPHLYPLASGIRVCISFLFLG----NGNGDVAEVSGIVMDFSDVANTKEEVL 243
           A  F+YL+    YP  SGIR  IS LF+     N +G + +V GI +DF+DVA+TKEEVL
Sbjct: 185 ALAFEYLDLSPCYPFISGIRAWISLLFMDVEDMNDDG-LLDVFGIQLDFNDVADTKEEVL 244

Query: 244 CLLERLDWK 249
            LL+ LDWK
Sbjct: 245 WLLDMLDWK 252

[Close]

BLAST of CmoCh12G006410.1 vs. TrEMBL
Match: A0A0A0L6S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 2.6e-91
Identity = 165/249 (66.27%), Postives = 198/249 (79.52%), Query Frame = 1


Query: 1   MAW-EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGT 60
           M W EIL ++FPLLE VDLASCMAV ++WRD+A+DDYFWKCLC K+WPST K S+ PT T
Sbjct: 1   MTWEEILKVIFPLLEGVDLASCMAVCKQWRDIAQDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 61  YYKLYRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPR 120
           YYKLYRN Y+ PN+RRLL PRLSFDDLEFFIDIWSE  L+FS+VV G + Q+G+KNP P 
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVSGGIFQNGMKNPPPS 120

Query: 121 TINVLSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQ 180
           T N+LSY LE P FKMTL VEP FSIP+ +T+  SV+VG KDS+KVA+IVNKS+FDY+D+
Sbjct: 121 TGNLLSYHLEVPEFKMTLTVEPRFSIPISNTVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 181 TSCRAFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEEVL 240
           TS RA  FDYL+F   +P  SGIR  IS LF+ +G+    +V GIVMDF D ANTK+EVL
Sbjct: 181 TSYRALAFDYLDFSPFHPFVSGIRAWISLLFMDDGDDGAIDVFGIVMDFCDAANTKDEVL 240

Query: 241 CLLERLDWK 249
            LL+ LDWK
Sbjct: 241 WLLDLLDWK 249

[Close]

BLAST of CmoCh12G006410.1 vs. TrEMBL
Match: A0A161Y7G0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025424 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 4.7e-80
Identity = 141/244 (57.79%), Postives = 184/244 (75.41%), Query Frame = 1


Query: 4   EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTYYKL 63
           E+L  VFPLL+  DLASCM VS++WRD+A+DDYFWKCLC KRWPS  K  + PT TYYKL
Sbjct: 5   EVLKDVFPLLDGTDLASCMLVSKQWRDIAQDDYFWKCLCFKRWPSICKRPSAPTETYYKL 64

Query: 64  YRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRTINV 123
           ++  Y+  + ++LL PRLSF DLEF+IDIWSE +L+FS+V+ G VLQ GV NP P   +V
Sbjct: 65  FKTFYKRQHQKKLLPPRLSFSDLEFYIDIWSEDSLIFSEVIAGPVLQKGVWNPPPGICDV 124

Query: 124 LSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCR 183
           L + LEGP +KMT +V+P FS+P+C TI VS++VG KDS+KVA I+NKS+FDY+D+TS R
Sbjct: 125 LRFHLEGPEYKMTFSVDPRFSVPLCQTISVSMLVGRKDSNKVACIINKSVFDYIDRTSYR 184

Query: 184 AFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEEVLCLLE 243
           A  FDYL F   YP  SGIR  +S LF+  G+ +V +V G+ +DF D AN+++EVL L +
Sbjct: 185 ALAFDYLEFSSSYPFVSGIRAWMSLLFMDKGSEEVIDVFGVEIDFCDAANSEDEVLWLFD 244

Query: 244 RLDW 248
            LDW
Sbjct: 245 MLDW 248

[Close]

BLAST of CmoCh12G006410.1 vs. TrEMBL
Match: B9SJD7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525640 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 6.1e-80
Identity = 145/245 (59.18%), Postives = 182/245 (74.29%), Query Frame = 1


Query: 4   EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTYYKL 63
           E+L  VFPLL+ VDLASCM VS++WRD ARDDYFWKCLC KRWPS  K  N PT TY KL
Sbjct: 5   EVLKAVFPLLDGVDLASCMVVSKQWRDTARDDYFWKCLCAKRWPSICKRPNPPTVTYCKL 64

Query: 64  YRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRTINV 123
           Y+  Y+  N + LL PRLSFDDLEFFIDIWSE  L+FS+VVPG VL  G+K P P   ++
Sbjct: 65  YQTFYKRQNRQTLLPPRLSFDDLEFFIDIWSEEKLIFSEVVPGPVLLGGIKVPPPGICDI 124

Query: 124 LSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCR 183
           L + LEGP +KMTL VEP   IP+  T+ VSV+VG KD++KVA+++N+S+FDY+D+T+ R
Sbjct: 125 LRFHLEGPDYKMTLPVEPRVKIPLSQTVSVSVLVGRKDTNKVARVINRSVFDYIDRTAYR 184

Query: 184 AFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEEVLCLLE 243
           +  F+YL+F   +P   GIR  IS LF+ +GN  V +V GI MDF D AN++EEVL LL+
Sbjct: 185 SMAFEYLDFSPAHPFVPGIRAWISLLFMEDGNEGVIDVFGIEMDFRDAANSREEVLWLLD 244

Query: 244 RLDWK 249
            LDWK
Sbjct: 245 MLDWK 249

[Close]

BLAST of CmoCh12G006410.1 vs. TrEMBL
Match: M5X692_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010438mg PE=4 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 9.8e-78
Identity = 143/245 (58.37%), Postives = 180/245 (73.47%), Query Frame = 1


Query: 4   EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTYYKL 63
           E+L  VFPLLE VDLASCM VS++WR +ARDD+FWKC C KRWPS  K  N PT TYYKL
Sbjct: 5   EVLKAVFPLLEGVDLASCMVVSKQWRHIARDDFFWKCACAKRWPSICKRPNPPTLTYYKL 64

Query: 64  YRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRTINV 123
           Y+  Y+    R LL PRLSFDDLEFFIDIW+E   +FS+VVPG +LQ+G+K P P   ++
Sbjct: 65  YQTFYKRRPGRILLPPRLSFDDLEFFIDIWTEDRFIFSEVVPGPILQNGIKIPPPGVCDM 124

Query: 124 LSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCR 183
           L   +E   +KM + VEP F++P+  T+ VSV+VG KDS+KVA I+NKS+FDY+D+T+ R
Sbjct: 125 LRLHMESSEYKMKVPVEPRFTVPLSQTVNVSVLVGRKDSNKVACILNKSMFDYIDRTAYR 184

Query: 184 AFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEEVLCLLE 243
           A   DYL+F  +YP  +GIR  IS LF+ +GN  V +V GI MDF D AN+KEEVL LL+
Sbjct: 185 AMANDYLDFSPVYPFTTGIRAWISLLFMDSGNEGVVDVFGIEMDFMDAANSKEEVLWLLD 244

Query: 244 RLDWK 249
            LDWK
Sbjct: 245 MLDWK 249

[Close]

BLAST of CmoCh12G006410.1 vs. TrEMBL
Match: A0A0D2P561_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G082000 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 2.2e-77
Identity = 142/245 (57.96%), Postives = 180/245 (73.47%), Query Frame = 1


Query: 4   EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTYYKL 63
           E+L +VFP L+ VDLA+CM V ++WR +A+DDYFWKC+C KRWPS  K  N PT TYYKL
Sbjct: 5   EVLKVVFPFLDGVDLAACMVVCKQWRHIAKDDYFWKCVCAKRWPSICKRPNPPTVTYYKL 64

Query: 64  YRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRTINV 123
           Y+  Y+  + R LL PRLSFDDLEFFIDIW+E  L+FS+VVPG VLQ G+K P     ++
Sbjct: 65  YQTFYKRKHQRTLLPPRLSFDDLEFFIDIWTEDKLIFSEVVPGPVLQRGIKIPPAGICDM 124

Query: 124 LSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCR 183
           L + L+GP +KM L V+P F+IP   T+ VSV+VG KDS+KVA I+NKS+FDY+D+T+ R
Sbjct: 125 LKFHLQGPEYKMILPVDPRFTIPWSQTVSVSVLVGRKDSNKVACIINKSMFDYIDRTASR 184

Query: 184 AFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEEVLCLLE 243
           A  FDYL F   YP  SGIR  IS LF+ + +  V +V GI MDF D AN++EEVL LL+
Sbjct: 185 ALAFDYLVFSPYYPFISGIRAWISLLFMEDRSNGVIDVFGIEMDFCDAANSQEEVLWLLD 244

Query: 244 RLDWK 249
            LDWK
Sbjct: 245 MLDWK 249

[Close]

BLAST of CmoCh12G006410.1 vs. TAIR10
Match: AT5G39250.1 (AT5G39250.1 F-box family protein)

HSP 1 Score: 257.3 bits (656), Expect = 9.7e-69
Identity = 129/249 (51.81%), Postives = 172/249 (69.08%), Query Frame = 1


Query: 4   EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTYYKL 63
           E+L  VFPLLE  DLASCM V ++WRD+ARDD++WKC C K+WPS  K    PT TYYK+
Sbjct: 5   EVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYYKM 64

Query: 64  YRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRTINV 123
           Y+   +   +R L  PRLSF++LEFFIDIWSE  LVFS ++PG  L++G++       NV
Sbjct: 65  YQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGISNV 124

Query: 124 LSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCR 183
           L   L  P +KM +  EP F+IP+  ++ VSV+V   DS KVA+I+N+S+FDY+D++S R
Sbjct: 125 LRTHLGRPDYKMVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSYR 184

Query: 184 AFYFDYLNFPHLYPLASGIRVCISFLFLG----NGNGDVAEVSGIVMDFSDVANTKEEVL 243
           A  F+YL+    YP  SGIR  IS LF+     N +G + +V GI +DF+DVA+TKEEVL
Sbjct: 185 ALAFEYLDLSPCYPFISGIRAWISLLFMDVEDMNDDG-LLDVFGIQLDFNDVADTKEEVL 244

Query: 244 CLLERLDWK 249
            LL+ LDWK
Sbjct: 245 WLLDMLDWK 252

[Close]

BLAST of CmoCh12G006410.1 vs. NCBI nr
Match: gi|659095831|ref|XP_008448789.1| (PREDICTED: F-box protein At5g39250 [Cucumis melo])

HSP 1 Score: 346.7 bits (888), Expect = 3.4e-92
Identity = 166/249 (66.67%), Postives = 199/249 (79.92%), Query Frame = 1


Query: 1   MAW-EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGT 60
           M W E+L ++FPLLE VDLASCMAV ++WRD+ARDDYFWKCLC K+WPST K S+ PT T
Sbjct: 1   MTWEEVLKVIFPLLEGVDLASCMAVCKQWRDIARDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 61  YYKLYRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPR 120
           YYKLYRN Y+ PN+RRLL PRLSFDDLEFFIDIWSE  L+FS+ V G++LQ+G+K+P P 
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEAVSGRILQNGMKSPPPG 120

Query: 121 TINVLSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQ 180
           T NVLSY LE P FKMTL VEP FSIP+ + +  SV+VG KDS+KVA+IVNKS+FDY+D+
Sbjct: 121 TSNVLSYHLEVPEFKMTLPVEPRFSIPISNAVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 181 TSCRAFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEEVL 240
           TS RA  FDYL+F  L+P  SGIR  IS LF+ +GN    +V GIVMDF D ANTK+EVL
Sbjct: 181 TSYRALAFDYLDFSPLHPFVSGIRAWISLLFMDDGNDGAIDVFGIVMDFCDAANTKDEVL 240

Query: 241 CLLERLDWK 249
            LL+ LDWK
Sbjct: 241 WLLDLLDWK 249

[Close]

BLAST of CmoCh12G006410.1 vs. NCBI nr
Match: gi|449458996|ref|XP_004147232.1| (PREDICTED: F-box protein At5g39250 [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 3.8e-91
Identity = 165/249 (66.27%), Postives = 198/249 (79.52%), Query Frame = 1


Query: 1   MAW-EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGT 60
           M W EIL ++FPLLE VDLASCMAV ++WRD+A+DDYFWKCLC K+WPST K S+ PT T
Sbjct: 1   MTWEEILKVIFPLLEGVDLASCMAVCKQWRDIAQDDYFWKCLCAKKWPSTCKTSHPPTDT 60

Query: 61  YYKLYRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPR 120
           YYKLYRN Y+ PN+RRLL PRLSFDDLEFFIDIWSE  L+FS+VV G + Q+G+KNP P 
Sbjct: 61  YYKLYRNFYKRPNNRRLLPPRLSFDDLEFFIDIWSEDRLIFSEVVSGGIFQNGMKNPPPS 120

Query: 121 TINVLSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQ 180
           T N+LSY LE P FKMTL VEP FSIP+ +T+  SV+VG KDS+KVA+IVNKS+FDY+D+
Sbjct: 121 TGNLLSYHLEVPEFKMTLTVEPRFSIPISNTVSASVLVGRKDSNKVARIVNKSVFDYIDR 180

Query: 181 TSCRAFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEEVL 240
           TS RA  FDYL+F   +P  SGIR  IS LF+ +G+    +V GIVMDF D ANTK+EVL
Sbjct: 181 TSYRALAFDYLDFSPFHPFVSGIRAWISLLFMDDGDDGAIDVFGIVMDFCDAANTKDEVL 240

Query: 241 CLLERLDWK 249
            LL+ LDWK
Sbjct: 241 WLLDLLDWK 249

[Close]

BLAST of CmoCh12G006410.1 vs. NCBI nr
Match: gi|1009125874|ref|XP_015879848.1| (PREDICTED: F-box protein At5g39250 [Ziziphus jujuba])

HSP 1 Score: 306.2 bits (783), Expect = 5.1e-80
Identity = 147/245 (60.00%), Postives = 184/245 (75.10%), Query Frame = 1


Query: 4   EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTYYKL 63
           E+L  VFPLLE VDLASCMAVS++WR +A+DDY WKCLC KRWPS  K  N PT TYYKL
Sbjct: 5   EVLKAVFPLLEGVDLASCMAVSKQWRSLAQDDYLWKCLCAKRWPSICKRPNPPTVTYYKL 64

Query: 64  YRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRTINV 123
           Y+  Y+  + R LL PRLSFDDLEFFID+W+E  L+FS+VVPG VLQ G+K P     ++
Sbjct: 65  YQTFYKRQHCRTLLPPRLSFDDLEFFIDVWTEDRLIFSEVVPGPVLQTGIKIPPAGICDM 124

Query: 124 LSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCR 183
           L + LEGP +KMTL VEP F +P+  T+ VSV+VG KD++KVA I+NKS+FDY+D+T+ R
Sbjct: 125 LRFHLEGPEYKMTLPVEPRFKVPLSQTVSVSVLVGRKDTNKVACIINKSMFDYIDRTAFR 184

Query: 184 AFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEEVLCLLE 243
           A  FDYL+F  +Y   SGIR  IS LF+ +G+  V +V GI MDF D AN+KEEVL LL+
Sbjct: 185 ALAFDYLDFSPIYYFISGIRAWISLLFMEDGSESVIDVFGIEMDFCDAANSKEEVLWLLD 244

Query: 244 RLDWK 249
            LDW+
Sbjct: 245 MLDWR 249

[Close]

BLAST of CmoCh12G006410.1 vs. NCBI nr
Match: gi|1021030564|gb|KZM88349.1| (hypothetical protein DCAR_025424 [Daucus carota subsp. sativus])

HSP 1 Score: 305.8 bits (782), Expect = 6.7e-80
Identity = 141/244 (57.79%), Postives = 184/244 (75.41%), Query Frame = 1


Query: 4   EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTYYKL 63
           E+L  VFPLL+  DLASCM VS++WRD+A+DDYFWKCLC KRWPS  K  + PT TYYKL
Sbjct: 5   EVLKDVFPLLDGTDLASCMLVSKQWRDIAQDDYFWKCLCFKRWPSICKRPSAPTETYYKL 64

Query: 64  YRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRTINV 123
           ++  Y+  + ++LL PRLSF DLEF+IDIWSE +L+FS+V+ G VLQ GV NP P   +V
Sbjct: 65  FKTFYKRQHQKKLLPPRLSFSDLEFYIDIWSEDSLIFSEVIAGPVLQKGVWNPPPGICDV 124

Query: 124 LSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCR 183
           L + LEGP +KMT +V+P FS+P+C TI VS++VG KDS+KVA I+NKS+FDY+D+TS R
Sbjct: 125 LRFHLEGPEYKMTFSVDPRFSVPLCQTISVSMLVGRKDSNKVACIINKSVFDYIDRTSYR 184

Query: 184 AFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEEVLCLLE 243
           A  FDYL F   YP  SGIR  +S LF+  G+ +V +V G+ +DF D AN+++EVL L +
Sbjct: 185 ALAFDYLEFSSSYPFVSGIRAWMSLLFMDKGSEEVIDVFGVEIDFCDAANSEDEVLWLFD 244

Query: 244 RLDW 248
            LDW
Sbjct: 245 MLDW 248

[Close]

BLAST of CmoCh12G006410.1 vs. NCBI nr
Match: gi|255570292|ref|XP_002526106.1| (PREDICTED: F-box protein At5g39250 [Ricinus communis])

HSP 1 Score: 305.4 bits (781), Expect = 8.8e-80
Identity = 145/245 (59.18%), Postives = 182/245 (74.29%), Query Frame = 1


Query: 4   EILNLVFPLLEDVDLASCMAVSREWRDVARDDYFWKCLCIKRWPSTYKMSNFPTGTYYKL 63
           E+L  VFPLL+ VDLASCM VS++WRD ARDDYFWKCLC KRWPS  K  N PT TY KL
Sbjct: 5   EVLKAVFPLLDGVDLASCMVVSKQWRDTARDDYFWKCLCAKRWPSICKRPNPPTVTYCKL 64

Query: 64  YRNSYQCPNSRRLLSPRLSFDDLEFFIDIWSEGNLVFSKVVPGKVLQDGVKNPTPRTINV 123
           Y+  Y+  N + LL PRLSFDDLEFFIDIWSE  L+FS+VVPG VL  G+K P P   ++
Sbjct: 65  YQTFYKRQNRQTLLPPRLSFDDLEFFIDIWSEEKLIFSEVVPGPVLLGGIKVPPPGICDI 124

Query: 124 LSYLLEGPGFKMTLAVEPGFSIPMCDTIGVSVIVGYKDSSKVAQIVNKSIFDYVDQTSCR 183
           L + LEGP +KMTL VEP   IP+  T+ VSV+VG KD++KVA+++N+S+FDY+D+T+ R
Sbjct: 125 LRFHLEGPDYKMTLPVEPRVKIPLSQTVSVSVLVGRKDTNKVARVINRSVFDYIDRTAYR 184

Query: 184 AFYFDYLNFPHLYPLASGIRVCISFLFLGNGNGDVAEVSGIVMDFSDVANTKEEVLCLLE 243
           +  F+YL+F   +P   GIR  IS LF+ +GN  V +V GI MDF D AN++EEVL LL+
Sbjct: 185 SMAFEYLDFSPAHPFVPGIRAWISLLFMEDGNEGVIDVFGIEMDFRDAANSREEVLWLLD 244

Query: 244 RLDWK 249
            LDWK
Sbjct: 245 MLDWK 249

The following BLAST results are available for this feature:

BLAST of CmoCh12G006410.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FB270_ARATH	1.7e-67	51.81	F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1	[more]

BLAST of CmoCh12G006410.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6S1_CUCSA	2.6e-91	66.27	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1	[more]
A0A161Y7G0_DAUCA	4.7e-80	57.79	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025424 PE=4 SV=1	[more]
B9SJD7_RICCO	6.1e-80	59.18	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0525640 PE=4 SV=1	[more]
M5X692_PRUPE	9.8e-78	58.37	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010438mg PE=4 SV=1	[more]
A0A0D2P561_GOSRA	2.2e-77	57.96	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G082000 PE=4 SV=1	[more]

BLAST of CmoCh12G006410.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39250.1	9.7e-69	51.81	F-box family protein	[more]

BLAST of CmoCh12G006410.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659095831\|ref\|XP_008448789.1\|	3.4e-92	66.67	PREDICTED: F-box protein At5g39250 [Cucumis melo]	[more]
gi\|449458996\|ref\|XP_004147232.1\|	3.8e-91	66.27	PREDICTED: F-box protein At5g39250 [Cucumis sativus]	[more]
gi\|1009125874\|ref\|XP_015879848.1\|	5.1e-80	60.00	PREDICTED: F-box protein At5g39250 [Ziziphus jujuba]	[more]
gi\|1021030564\|gb\|KZM88349.1\|	6.7e-80	57.79	hypothetical protein DCAR_025424 [Daucus carota subsp. sativus]	[more]
gi\|255570292\|ref\|XP_002526106.1\|	8.8e-80	59.18	PREDICTED: F-box protein At5g39250 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh12G006410	CmoCh12G006410	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh12G006410.1	CmoCh12G006410.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G006410.1.CDS.1	CmoCh12G006410.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G006410.1.exon.1	CmoCh12G006410.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 4..44 score: 4.
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 1..41 score: 1.
IPR001810	F-box domain	PROFILE	PS50181	FBOX	coord: 1..41 score: 9
IPR001810	F-box domain	unknown	SSF81383	F-box domain	coord: 3..68 score: 2.83
None	No IPR available	GENE3D	G3DSA:1.20.1280.50		coord: 4..72 score: 2.2
None	No IPR available	PANTHER	PTHR20995	FAMILY NOT NAMED	coord: 4..248 score: 2.0
None	No IPR available	PANTHER	PTHR20995:SF15	SUBFAMILY NOT NAMED	coord: 4..248 score: 2.0