CmoCh11G012720.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh11G012720.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr11 : 8222555 .. 8226273 (+)
Sequence length545
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGGAGGTGGTGGATGGGAGGCACCACGGCAACATCCCAATGTCCGGCTGTGCGACCATACTCCCCCGCACTATATAGTATGTTCATATAAGTGAATGAAGAACACAAAATATGTATATCCTAGAGTTGGGAAGTGCTGGTTTCAAACTTCAAAAATGATGAAAATTTGATGAAAAACATTGTGTAATCCAATTTGAGACCCAAAACGGCCGTATTTTGGGTTGAAGGGTCGGACAAGCCGCCTCCGGCGACTTGCCAGGACATAGCTCTCGAAAAGTTACATGGAATCAAAAAAAAATTCATCAAATTTGATCAACGGAGCTCAAAGTTATGGACTCTCGAAGTTTCGACTTAGTTCAAAGTAATTTTTGGGAGATTTAAAGGTCCAGAAACTTTGAAGTTTTACTCTGTTTATGACCACGGTATTGTAGATGCCGAAAAAACGTATGAAAAAAAGTGCTTATTTGCTTAAAACAAACCAGAATCGAGAGAGATACGTTCTTCGAAAGGTTTGCTATCTGCTGTATTCGTATCAGTTCGACTGAATCGGAGAGAGCGGGGTTGTCCATCCTCTTATAAGATTTAAATACTTCCAGACAAACTAAGTTCAAATTCATTTATCGTCAAATTGGTACTCCAGTATATTTTACCCTTAGTAAGCCAACGTTCGAATCGTATCAAGAACGCTTTTTTTTTAAAAAAAAATTAAATTTCTGCATAAGCTCCTTGGCGCGTTTTCTTATTTTTGTTATATAAATTTATATATTTTCTTTTTTGTGTGTGCCGCGCGCAAAACTCGTAAAAAGGTCCCCTCCCGCCCACTCCCGCTCCACAAGAAATACCTTCCGACAAAGCAAAACCACGACGAGGAATTGGTGGATCCGAAAGCGAAAAAAGATGCGTTTAACAACAACAATGTTGATGCGTTGAAGTGGACGCATTTGTGCAGGGTGTTGGAGGGAGGAGCATGTTCGGATGGACGAATATGCGGTTGAAGACGGGAACATGAGAGTGATATTGGTGGAGGCCATTGGGAATCTGTATTCAGATATCACAAATAAAAAAGGCTTCTCTCCATACTATTATCACCCTTCACCTTCTCTTCAAAGGGAAACAAGGTAAATCTAAATTTGTCTGGTTTTGATTTCTTCATTTATTTTATACCTAATGTGCTGTAATTAGAGGTGATATCTACATTTTCTGATTAGAGGTCGTATCTTATATTACAAATCATATGACCTACAAGATTTCCTTCTTGTACCCCGCTCCTCACGAGATTCTCTATGGTTTTTATTTATGCCGTCGATAGGGCATATCATTGGATGGAATGTAAAACTATTGTCCTCTCACCTGTAATAGGGCATAGCATTGGATGGAATGTAAAACTATTGTCCTCTCACCTGTAATAGGGCATAGCATTGGATGGAATGTAAAACTATTGTCCTCTCACCTGTAATAGGGCATAGCATTGGATGGAATGTAAAACTATTGTCCTCTCACCTGTAATAGGGCATAGCATTGGATGGAATGTAAAACTATTGTCCTCTCACCTGTAATAGGGCATAGCATTGGATGGAATGTAAAACTATTGTCCTCTCACCTGTAATAGGGCATAGCATTGGATGGAATGTAAAACTATTGTCCTCTCACCTGTAATAGGACATATCATTTCAAGTAATATGACCTACTACTAGCATGTCAATAAAAACATTTGTCCGCTCACCTGTATTCCTTCTTAATCTAACCCTCCCAGAAAAACTTCCGTGCTGAGCCAGTCTATTATTCAAACTCCTTGATTAACTCATCAACAGAATCACAGTCCCATTGTACACATGAATACCTCAACTGGGAGGGAGGCAACATATATCCACTTCAAGTATGTAACGTGTGATAGGCAAACAATTACAACGTCCAACGGGGGAAAACAAAGCACTTCCATGCAACTGCTAAACTGAATAACTTTATTCAACAACCAACAGAAACTAATCTGAAAGACTTCAACCTTGAAAGAGACGTTAGTTCCTGTATGCTTTGGAATTGAGGCGTACAGGGTCCTTAGATGTATTGTTAGTTCCTGTATGACATCTCATTGTTATTCCATAATTTGGTTAAGTACCTGAAATATTATGTACGACGTACTAAAATTTTTCTTCAGATTGGCCATTGAATTTAACCTCGTGTTTGTTGTCACATATATAAAATTCTTCCATTACATCGTGTTGCCCGATCATCTAATTTAAGTTTTTGATCTCATATTGATGTGGCTAATACAAGTTTATCTTTGGTCATTCTTCCATAATATATTGAGGATTATTGAGAGTGAGTCTCATGGGTTTATAAGTGAGGAATGCTATCTCCATTGGTATGAGGCTTTTTGGGGAAGCCCAAAGCAAAGCCATGAAAGCTTATGCTCTAAGTGGACAATATCATACCATTGTGGAGTCCGTGGTTTCTAACACAATATTGCATAATTATCTAATTTTGAAATGTGATTTTTTAGCATGACAACATTGAGGAATATTAGTACATCTAATAGACATGAAATCGAACTTTTCCCTACTAATGTTGTGCATATTAGGTAATGGAAGCAAATGAGCCAACCACAGAAAAGAAAAGAGGCACTTCATGCATGAGAGCTCGACATATTAGGAGCCAAATAGAGCTATATTCCCTGCTTTTTTAAAAAAAGGTTGGTTAAGAACACTACTTCTGCGTTCATTTCCATGTCCCTGCACTTGATTTCGTTGCATTGTTTTCTATTTATCAACTATAGTCTATTATACTAGAAACAAGCTCCTTCTATTATTGTGTGGGGATTTTTGCAATGGCAGACTCAAAATATGTCATAAGTTCTTTTATTTATTATTATTATTTTTCTTTTTTCTCTTTTGGAAAAGTTAGAAACATAATGTATATGGTTGAGCATCAATCAGAAATGCCCCTTTTCATTCCATTTTTTTGCATTTCTGCAGCAAAACACCTTTCCAAACTAAACTTTTCAACCACCTTGCTATTGCATTATATGTAGTCAAAAGGTATAGAAGCAGTATTAATTACGTCACGACGAGCTAGTATGAGTTTAATTTTTCCATTAATTAAGTTATTACCAACATGGTGATAATAAAATAATTTGGTTGCCCTATCATTCGTTATTAGGGGTGACATGTATAAAAGCAGCGGGGGGAAGACTAATTTCATCTCTTCTTTTTATACACCTTTGCAGCTCCTTGTTTGCTTGATTTGTTCAAAGATTTCAATATCATGTCGGCTAATTCCTAACTAAGATCAGAATCTTGCTAGCATCTTCTTTATTAAATTGATTTCCAAGGTCAAGATATCATGGCTGCTTTCTGCGGAGATTATGGTACGGAATAAATAAGAGAATCTTCAGAGGGTAGGAAGCGTGTTCTTCCTCCTAGCTGGAGTCTTCACCTCCCCTTGGTGCACTCTTAAAGATTTTTGTAATTACAAGCTTGATTATATTTGCTAGTTGGTAGTTCTTTTTGTAACCTATTTGGCATCTTCTTGTAGGGAGTGTTCATAAGGGGTGCTCAATTTATAAGGTGAGATCTCTCTATTTCATGATAAATTTATTTCTAATAAGTTTTCATGTATAATGCGTAAAAAATAGTGGGAAGACCAACTTCGTCTCTTCTTTCTTTGTTACTTATTTTGATTTGTTCTAAATTTTCAATATTATCTAGGCTAATTCCT

mRNA sequence

ATGGATGGGAGGTGGTGGATGGGAGGCACCACGGCAACATCCCAATGTCCGGCTGTGCGACCATACTCCCCCGCACTATATAGGTGTTGGAGGGAGGAGCATGTTCGGATGGACGAATATGCGGTTGAAGACGGGAACATGAGAGTGATATTGGTGGAGGCCATTGGGAATCTGTATTCAGATATCACAAATAAAAAAGGCTTCTCTCCATACTATTATCACCCTTCACCTTCTCTTCAAAGGGAAACAAGGTAATGGAAGCAAATGAGCCAACCACAGAAAAGAAAAGAGGCACTTCATGCATGAGAGCTCGACATATTAGGAGCCAAATAGAGCTATATTCCCTGCTTTTTTAAAAAAAGCTCCTTGTTTGCTTGATTTGTTCAAAGATTTCAATATCATGTCGGCTAATTCCTAACTAAGATCAGAATCTTGCTAGCATCTTCTTTATTAAATTGATTTCCAAGGTCAAGATATCATGGCTGCTTTCTGCGGAGATTATGGGAGTGTTCATAAGGGGTGCTCAATTTATAAGGCTAATTCCT

Coding sequence (CDS)

ATGGATGGGAGGTGGTGGATGGGAGGCACCACGGCAACATCCCAATGTCCGGCTGTGCGACCATACTCCCCCGCACTATATAGGTGTTGGAGGGAGGAGCATGTTCGGATGGACGAATATGCGGTTGAAGACGGGAACATGAGAGTGATATTGGTGGAGGCCATTGGGAATCTGTATTCAGATATCACAAATAAAAAAGGCTTCTCTCCATACTATTATCACCCTTCACCTTCTCTTCAAAGGGAAACAAGGTAA
Homology
The following BLAST results are available for this feature:
BLAST of CmoCh11G012720.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh11G012720.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh11G012720.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh11G012720.1 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh11G012720CmoCh11G012720gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh11G012720.1CmoCh11G012720.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh11G012720.1.exon.1CmoCh11G012720.1.exon.1exon
CmoCh11G012720.1.exon.2CmoCh11G012720.1.exon.2exon
CmoCh11G012720.1.exon.3CmoCh11G012720.1.exon.3exon
CmoCh11G012720.1.exon.4CmoCh11G012720.1.exon.4exon
CmoCh11G012720.1.exon.5CmoCh11G012720.1.exon.5exon
CmoCh11G012720.1.exon.6CmoCh11G012720.1.exon.6exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh11G012720.1.CDS.1CmoCh11G012720.1.CDS.1CDS
CmoCh11G012720.1.CDS.2CmoCh11G012720.1.CDS.2CDS
CmoCh11G012720.1.CDS.3CmoCh11G012720.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh11G012720.1.three_prime_UTR.1CmoCh11G012720.1.three_prime_UTR.1three_prime_UTR
CmoCh11G012720.1.three_prime_UTR.2CmoCh11G012720.1.three_prime_UTR.2three_prime_UTR
CmoCh11G012720.1.three_prime_UTR.3CmoCh11G012720.1.three_prime_UTR.3three_prime_UTR
CmoCh11G012720.1.three_prime_UTR.4CmoCh11G012720.1.three_prime_UTR.4three_prime_UTR