CmoCh09G006880.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CATTATGTTTACAGACCAGCGAAGGTTTACATTTTTCATCTCCTCTGCACTGCACTACAGTCACTATACCACTGTACTGTTGAATTTGAATGACGAACAAATCGTATTTATTCTTTCATGGCTGCCTCTGCTTTCCTGCTAATCCTGTTCGCTTTTCTACCTGGGTTGCCCACCAAGTGTTTGTATAAATGCCGCTTCGAGCTCAAAACATTTGAACAGCTCATTGAGCTATGGAGCGATTGTGGGTTGTCTTTTTTTACATCTCTATTGCCTTTTTACACACTGCCCTGGCTATTCGAAGTGGTAATTGATTGTGTTTTACATTTTCATCTCCTCTGCATTGCACCACACTCACTATATCACTGTGCTGTTGAATTTGATTGATGAACGAATCGTATTTATTCTTTCATGGCTACCTCTGCTTTCTTCCTAATTCTACTCGCTTTTCTACCTGGTTTGCCCACCAAGTGTTTGTATAAATGCCGCTTCGAGCTCAAAACATTTGAACAGCTCATTGAGCTATGGAGCGATTGTGGGTTGTCTTTTTTTTACATCTCTATTGCTTTTTTATCCACTTCCCTGGCTATTCCAAGTGGTATTGATTATGTTTTTACATTTTCAAGCTCTGTTCTTTTGACTGTGGTGTCTGTTTTTATAAGATTTCATGAGACTTCTTTCTTGCAGATGCTGGTAGAAGCTCAACCAGTGAGTTCTTGAAGAAGGTGAAACTTCAAATTCAAGAGGGGATTATTTCAAAACCCCAACTGAAATTCTTGACTGTTAACTCTCCATTTTCATTGCCTCCTTTTGATTCACTTGCACCAATCCCATTGCCTGTAAAGTCTCCTCCTTTCTGTGAAGATGAACCTCCCCAAACTCCTCAGTCACCACCACCACCGCCGCCGCCGCCGTCACCACCTGGGATGATGTATTCCCACGCCCCACCACCGCCACCACCTGGGATGATGTATTCCCGCGCCCCACCACCGCCAGGTTTTCAGCCCAATGTACCTTCCAGAAGCCGAAGCCCTCCACCAGGCCCACCTAGCATCATCCCAATGACCCCTTCCGTCCCCTTAGGCCCATATCCTCCTAAGAACATTTCCAGCCCCACCCCACCAACTGGTCCTCCAAGCCCACCTCACCACTATGGTCCTACCCGACCTAAACATGCTTCTGGGCCACCCAGTCATGGGGGGCTTAGCCAACCAGTGGGGTTCTCTCCGCCACCTGATTCACCTCCTGCAGCACATGGGGGGAAGCCACGGTCGTCTGGTGCAGCATGGTGTGTGGCTAAGCCGTCCGTGGCTGATGCAATAATTCAAGAAGCCATGGATTATGCTTGTGGGTCAGGAGCCGATTGCATGGCCATTCAGCCTAATGGACATTGCTATGAACCTGACACTATTGTGGCACACGCCTCGTATGCTTTCAATAGCTACTGGCAGAAAACCAAGGTCACTGGCGGTACCTGCGATTTTGGAGGAACTGCCATGCTTGTAACAGTGGATCCAAGTGAGTTCATCACTCGCCATCTGTTTTCCAACATGTTCCTTTCAAATTCAACACAACCACTAGTTTAAACTAAACATTTAAAATTTTAAAAAATCCTCAATTACAATTTGAAAAAATCATAATAAGAATGTTTAAGAGGACAACATAAATTTCAAAGAATAAGAACGATATCGCTATCAAACGGGATCTTAATTATAAAAAATCTACTCGCTCCCTTTGATCCAATAACTTAAAGTTTTGTTTTTTTTTTTTTGGCTTGATTGTGGCAGGTTTTGAAGGGTGTAAGTTCGTCCTCGGTTGAGATTAGAGATGGAGACACTCCTACTTCATCATTTTTGATATATTGAATCTATGAAAAAATTTAGCTCTCTCTCAATACTGCTTTCACTTTTCTTAATTATTATTATTATTATTATATGCATTAATGCCAATTTTGGAAACACGGTTCTATGATATTGCCTATTATAAGCTCTCGTAGTTTTACTTTGGTATTCACCAAAAGAGCTCGTACCAATGGAG CATTATGTTTACAGACCAGCGAAGGTTTACATTTTTCATCTCCTCTGCACTGCACTACAGTCACTATACCACTGTACTGTTGAATTTGAATGACGAACAAATCGTATTTATTCTTTCATGGCTGCCTCTGCTTTCCTGCTAATCCTGTTCGCTTTTCTACCTGGGTTGCCCACCAAGTGTTTGTATAAATGCCGCTTCGAGCTCAAAACATTTGAACAGCTCATTGAGCTATGGAGCGATTGTGGGTTGTCTTTTTTTACATCTCTATTGCCTTTTTACACACTGCCCTGGCTATTCGAAGTGATGCTGGTAGAAGCTCAACCAGTGAGTTCTTGAAGAAGGTGAAACTTCAAATTCAAGAGGGGATTATTTCAAAACCCCAACTGAAATTCTTGACTGTTAACTCTCCATTTTCATTGCCTCCTTTTGATTCACTTGCACCAATCCCATTGCCTGTAAAGTCTCCTCCTTTCTGTGAAGATGAACCTCCCCAAACTCCTCAGTCACCACCACCACCGCCGCCGCCGCCGTCACCACCTGGGATGATGTATTCCCACGCCCCACCACCGCCACCACCTGGGATGATGTATTCCCGCGCCCCACCACCGCCAGGTTTTCAGCCCAATGTACCTTCCAGAAGCCGAAGCCCTCCACCAGGCCCACCTAGCATCATCCCAATGACCCCTTCCGTCCCCTTAGGCCCATATCCTCCTAAGAACATTTCCAGCCCCACCCCACCAACTGGTCCTCCAAGCCCACCTCACCACTATGGTCCTACCCGACCTAAACATGCTTCTGGGCCACCCAGTCATGGGGGGCTTAGCCAACCAGTGGGGTTCTCTCCGCCACCTGATTCACCTCCTGCAGCACATGGGGGGAAGCCACGGTCGTCTGGTGCAGCATGGTGTGTGGCTAAGCCGTCCGTGGCTGATGCAATAATTCAAGAAGCCATGGATTATGCTTGTGGGTCAGGAGCCGATTGCATGGCCATTCAGCCTAATGGACATTGCTATGAACCTGACACTATTGTGGCACACGCCTCGTATGCTTTCAATAGCTACTGGCAGAAAACCAAGGTCACTGGCGGTACCTGCGATTTTGGAGGAACTGCCATGCTTGTAACAGTGGATCCAAGTTTTGAAGGGTGTAAGTTCGTCCTCGGTTGAGATTAGAGATGGAGACACTCCTACTTCATCATTTTTGATATATTGAATCTATGAAAAAATTTAGCTCTCTCTCAATACTGCTTTCACTTTTCTTAATTATTATTATTATTATTATATGCATTAATGCCAATTTTGGAAACACGGTTCTATGATATTGCCTATTATAAGCTCTCGTAGTTTTACTTTGGTATTCACCAAAAGAGCTCGTACCAATGGAG ATGGAGCGATTGTGGGTTGTCTTTTTTTACATCTCTATTGCCTTTTTACACACTGCCCTGGCTATTCGAAGTGATGCTGGTAGAAGCTCAACCAGTGAGTTCTTGAAGAAGGTGAAACTTCAAATTCAAGAGGGGATTATTTCAAAACCCCAACTGAAATTCTTGACTGTTAACTCTCCATTTTCATTGCCTCCTTTTGATTCACTTGCACCAATCCCATTGCCTGTAAAGTCTCCTCCTTTCTGTGAAGATGAACCTCCCCAAACTCCTCAGTCACCACCACCACCGCCGCCGCCGCCGTCACCACCTGGGATGATGTATTCCCACGCCCCACCACCGCCACCACCTGGGATGATGTATTCCCGCGCCCCACCACCGCCAGGTTTTCAGCCCAATGTACCTTCCAGAAGCCGAAGCCCTCCACCAGGCCCACCTAGCATCATCCCAATGACCCCTTCCGTCCCCTTAGGCCCATATCCTCCTAAGAACATTTCCAGCCCCACCCCACCAACTGGTCCTCCAAGCCCACCTCACCACTATGGTCCTACCCGACCTAAACATGCTTCTGGGCCACCCAGTCATGGGGGGCTTAGCCAACCAGTGGGGTTCTCTCCGCCACCTGATTCACCTCCTGCAGCACATGGGGGGAAGCCACGGTCGTCTGGTGCAGCATGGTGTGTGGCTAAGCCGTCCGTGGCTGATGCAATAATTCAAGAAGCCATGGATTATGCTTGTGGGTCAGGAGCCGATTGCATGGCCATTCAGCCTAATGGACATTGCTATGAACCTGACACTATTGTGGCACACGCCTCGTATGCTTTCAATAGCTACTGGCAGAAAACCAAGGTCACTGGCGGTACCTGCGATTTTGGAGGAACTGCCATGCTTGTAACAGTGGATCCAAGTTTTGAAGGGTGTAAGTTCGTCCTCGGTTGA
BLAST of CmoCh09G006880.1 vs. Swiss-Prot
Match: PDCB2_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 2 OS=Arabidopsis thaliana GN=PDCB2 PE=1 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 8.0e-22 Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. Swiss-Prot
Match: PDCB3_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 3.4e-20 Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. Swiss-Prot
Match: PDCB1_ARATH (PLASMODESMATA CALLOSE-BINDING PROTEIN 1 OS=Arabidopsis thaliana GN=PDCB1 PE=1 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 5.7e-20 Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 1.4e-18 Identity = 40/96 (41.67%), Postives = 62/96 (64.58%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2) HSP 1 Score: 93.6 bits (231), Expect = 4.1e-18 Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. TrEMBL
Match: A0A0A0KZY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G620610 PE=4 SV=1) HSP 1 Score: 397.1 bits (1019), Expect = 1.9e-107 Identity = 231/339 (68.14%), Postives = 252/339 (74.34%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. TrEMBL
Match: A0A068V0Y2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00038547001 PE=4 SV=1) HSP 1 Score: 201.1 bits (510), Expect = 2.0e-48 Identity = 146/288 (50.69%), Postives = 169/288 (58.68%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. TrEMBL
Match: A0A061DME6_THECC (Carbohydrate-binding X8 domain superfamily protein, putative OS=Theobroma cacao GN=TCM_002061 PE=4 SV=1) HSP 1 Score: 199.1 bits (505), Expect = 7.7e-48 Identity = 147/312 (47.12%), Postives = 173/312 (55.45%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. TrEMBL
Match: M5XHN7_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa024492mg PE=4 SV=1) HSP 1 Score: 196.4 bits (498), Expect = 5.0e-47 Identity = 129/257 (50.19%), Postives = 153/257 (59.53%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. TrEMBL
Match: B9RRP6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1425890 PE=4 SV=1) HSP 1 Score: 193.4 bits (490), Expect = 4.2e-46 Identity = 138/265 (52.08%), Postives = 163/265 (61.51%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. TAIR10
Match: AT1G79480.1 (AT1G79480.1 Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 139.8 bits (351), Expect = 2.8e-33 Identity = 116/246 (47.15%), Postives = 144/246 (58.54%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. TAIR10
Match: AT5G67460.1 (AT5G67460.1 O-Glycosyl hydrolases family 17 protein) HSP 1 Score: 131.0 bits (328), Expect = 1.3e-30 Identity = 81/164 (49.39%), Postives = 103/164 (62.80%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. TAIR10
Match: AT4G13600.1 (AT4G13600.1 Carbohydrate-binding X8 domain superfamily protein) HSP 1 Score: 110.9 bits (276), Expect = 1.4e-24 Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. TAIR10
Match: AT5G08000.1 (AT5G08000.1 glucan endo-1,3-beta-glucosidase-like protein 3) HSP 1 Score: 105.9 bits (263), Expect = 4.5e-23 Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. TAIR10
Match: AT2G05790.1 (AT2G05790.1 O-Glycosyl hydrolases family 17 protein) HSP 1 Score: 101.7 bits (252), Expect = 8.5e-22 Identity = 51/113 (45.13%), Postives = 65/113 (57.52%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. NCBI nr
Match: gi|449456665|ref|XP_004146069.1| (PREDICTED: leucine-rich repeat extensin-like protein 5 [Cucumis sativus]) HSP 1 Score: 397.1 bits (1019), Expect = 2.8e-107 Identity = 231/339 (68.14%), Postives = 252/339 (74.34%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. NCBI nr
Match: gi|659129330|ref|XP_008464632.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis melo]) HSP 1 Score: 390.2 bits (1001), Expect = 3.4e-105 Identity = 229/348 (65.80%), Postives = 253/348 (72.70%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. NCBI nr
Match: gi|1009127470|ref|XP_015880713.1| (PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 1 [Ziziphus jujuba]) HSP 1 Score: 206.8 bits (525), Expect = 5.3e-50 Identity = 161/328 (49.09%), Postives = 187/328 (57.01%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. NCBI nr
Match: gi|720015086|ref|XP_010260718.1| (PREDICTED: extensin [Nelumbo nucifera]) HSP 1 Score: 204.9 bits (520), Expect = 2.0e-49 Identity = 151/299 (50.50%), Postives = 182/299 (60.87%), Query Frame = 1
BLAST of CmoCh09G006880.1 vs. NCBI nr
Match: gi|661882555|emb|CDP13558.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 201.1 bits (510), Expect = 2.9e-48 Identity = 146/288 (50.69%), Postives = 169/288 (58.68%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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