CmoCh08G006880.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAACTTTCTCCACAAAAACGCTGGTACAACGCAGAATTCTCTCTCACGATCTCTCAGAGAATCCCACCGGAAAGATTCGCCTGAAACTTTACCATATGACTGGTGACCGGAAAATGTCGTCTGTGTCGGAGGTAGCGGTGCAGCTACCGGAGATGACGAAGGTGGCGGCTATGGCGTCCAAGAGCGGCACGATTGGTGGACTGATTGAACCGTCGGACCGAAGCTTAGACCGCCTGAGAGCTGATTTGTGTCAGTTGATGCTGAGGCTGATTTGTGTTGCTACGTCGGTGACGGCAATGTCCTTGATGGTTACGGCGGCGGAGTCTAGCACGGTTTCCATTTACGGATTTGAACTTCCCGTTCATTCCAAGTGGTCGTTCTCGGACGTATTCGAGTAAGTTTCGTCGTTTGTTTTGTTGGTGCTTAATGCCTTAGAGGTTTTTGTGATTTGAATCTGTGATTGGCTTGTAAGCAAGGAAGAACCGTGAGATCCATCAGTTGAAACGTGACTGCTCTGTGGAGGAATGGCGGTCCTCTGTAACTTATAATTTCTTGTTTTCCTCTCTTCATCGTTTGTTCTCCTTCAATCTTTTATTGGAATGCTTCAGATATTCATCCAAGGAGAGGAGAGGAGAGGAGAAAATTGGAGGGCTAAGGATTGGACGGTGTTTTCTGTCTGCTTTTGGGGGAAACATTTTACTGCATTTTCTTTTTGTTTCTTACTGAGATTTCTTCGCATCCAAACAGAATGTCATCTATTTTTTCTTTTCGTTCCCGAACACTTTTGATTTCATTATTACTGGTTTGCCTACTTTGGTAAAGGCCACATTAAATCTTACGGTTGATTCAGTCGTTTTTCCACTGTTTGGATGCTGACAAACCTGCCTTTCTTCGAATGGAGAAAATGGAATCTGGAAAATCCTCCTCATCCAAGTTTTATGGCTTCGTCTAAATGTAATGAACAGAATTGAACCCGTGAACCCAATTTCTTCTTTCCTCAAAATATTCCCTATTTCATGTTTGTCTTCTTCTGGACCGGTTTATGACTATCTATACAAAATTCTAACCAACTGCCTTCCGCATAATTTCTTCGTCTTTCTTTATTATTCTTATTGCTTCAATGGTGCCACAGATCACCGTGTTGATTATTTTTTAATGGATAATAAAACAAAGAGTTTGTTGCATTTGCATAGACTTGTGTTATTATAAAAATGAATTACGTGTTGAATACAACAGAAATTGGATTGTGGGGTTTTTGTTCTAATGAGTTGAAATTCGTTGAACCCCGTGAGTTTTTTGTGAGTGTAGGTATCTTGTTGGAGTTTCAGGGGCTGTCGCTGCCTACTCTTTGCTGCAGCTTCTTGTTACTACTTCCAAGCTTGTCAGGAAGTCCCCAGTGCTTGGCTCCAGACGTCAAGCCTGGCTTATTTTCGCTGTTGATCTGGTAAGGGAAATAGTAGCATATTGATTATAATTTCTGGAAGAAATGTTCTTGAGACTAGACTAGACGGTTGTTTTATGCGATTCATGAAAGGGAGTGTCCTATTAGGACTGTTTTTTCAAGAATTTGTTGTGTGGGTCGTAGGCCTTGGCATATGCACTGATGAGTGCTGGATCAGCTGCAGCTGGGATCTCAAATCTGAACCGCACTGGCATTCGGCACACAACTCTGCCTAACTTTTGTAAGCCATTACAACGCTTTTGTAACCACGTTGCCATATCTATTGCCTTCACATTCTTTACCTGCTGCTTGCTCACCACTTCTGCTATCCAATATGTTATTTGGCTCTCCAAAAACTGAACCCTCATGAGAAATGAACCTTCTGCCTATGGGAAAACTTAATGTAAAGAATATGGTGTTTCTTTCTGTCCCTTCTGGTTTCATAGTGTCCTTAAATCAAATGAAACTTGTACGGTGTGTATACATGGTAGCATCCCACTGCTTTTTTAGCTCAGATTGTTCATTTAGATAGCTATTAGTGGTTTTATGGTGTATTAACTTTGATCTCGAGTGTTTTAAAGAATGAGGTTGTTTGGAAC TAAACTTTCTCCACAAAAACGCTGGTACAACGCAGAATTCTCTCTCACGATCTCTCAGAGAATCCCACCGGAAAGATTCGCCTGAAACTTTACCATATGACTGGTGACCGGAAAATGTCGTCTGTGTCGGAGGTAGCGGTGCAGCTACCGGAGATGACGAAGGTGGCGGCTATGGCGTCCAAGAGCGGCACGATTGGTGGACTGATTGAACCGTCGGACCGAAGCTTAGACCGCCTGAGAGCTGATTTGTGTCAGTTGATGCTGAGGCTGATTTGTGTTGCTACGTCGGTGACGGCAATGTCCTTGATGGTTACGGCGGCGGAGTCTAGCACGGTTTCCATTTACGGATTTGAACTTCCCGTTCATTCCAAGTGGTCGTTCTCGGACGTATTCGAGTATCTTGTTGGAGTTTCAGGGGCTGTCGCTGCCTACTCTTTGCTGCAGCTTCTTGTTACTACTTCCAAGCTTGTCAGGAAGTCCCCAGTGCTTGGCTCCAGACGTCAAGCCTGGCTTATTTTCGCTGTTGATCTGGCCTTGGCATATGCACTGATGAGTGCTGGATCAGCTGCAGCTGGGATCTCAAATCTGAACCGCACTGGCATTCGGCACACAACTCTGCCTAACTTTTGTAAGCCATTACAACGCTTTTGTAACCACGTTGCCATATCTATTGCCTTCACATTCTTTACCTGCTGCTTGCTCACCACTTCTGCTATCCAATATGTTATTTGGCTCTCCAAAAACTGAACCCTCATGAGAAATGAACCTTCTGCCTATGGGAAAACTTAATGTAAAGAATATGGTGTTTCTTTCTGTCCCTTCTGGTTTCATAGTGTCCTTAAATCAAATGAAACTTGTACGGTGTGTATACATGGTAGCATCCCACTGCTTTTTTAGCTCAGATTGTTCATTTAGATAGCTATTAGTGGTTTTATGGTGTATTAACTTTGATCTCGAGTGTTTTAAAGAATGAGGTTGTTTGGAAC ATGACTGGTGACCGGAAAATGTCGTCTGTGTCGGAGGTAGCGGTGCAGCTACCGGAGATGACGAAGGTGGCGGCTATGGCGTCCAAGAGCGGCACGATTGGTGGACTGATTGAACCGTCGGACCGAAGCTTAGACCGCCTGAGAGCTGATTTGTGTCAGTTGATGCTGAGGCTGATTTGTGTTGCTACGTCGGTGACGGCAATGTCCTTGATGGTTACGGCGGCGGAGTCTAGCACGGTTTCCATTTACGGATTTGAACTTCCCGTTCATTCCAAGTGGTCGTTCTCGGACGTATTCGAGTATCTTGTTGGAGTTTCAGGGGCTGTCGCTGCCTACTCTTTGCTGCAGCTTCTTGTTACTACTTCCAAGCTTGTCAGGAAGTCCCCAGTGCTTGGCTCCAGACGTCAAGCCTGGCTTATTTTCGCTGTTGATCTGGCCTTGGCATATGCACTGATGAGTGCTGGATCAGCTGCAGCTGGGATCTCAAATCTGAACCGCACTGGCATTCGGCACACAACTCTGCCTAACTTTTGTAAGCCATTACAACGCTTTTGTAACCACGTTGCCATATCTATTGCCTTCACATTCTTTACCTGCTGCTTGCTCACCACTTCTGCTATCCAATATGTTATTTGGCTCTCCAAAAACTGA
BLAST of CmoCh08G006880.1 vs. Swiss-Prot
Match: CSPLD_VITVI (CASP-like protein 3A1 OS=Vitis vinifera GN=VIT_09s0002g03780 PE=2 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 3.8e-63 Identity = 130/206 (63.11%), Postives = 166/206 (80.58%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. Swiss-Prot
Match: CSPLF_RICCO (CASP-like protein 3A1 OS=Ricinus communis GN=RCOM_1491260 PE=2 SV=1) HSP 1 Score: 239.2 bits (609), Expect = 4.2e-62 Identity = 137/222 (61.71%), Postives = 168/222 (75.68%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. Swiss-Prot
Match: CSPLO_POPTR (CASP-like protein 3A1 OS=Populus trichocarpa GN=POPTRDRAFT_553757 PE=3 SV=2) HSP 1 Score: 236.1 bits (601), Expect = 3.6e-61 Identity = 132/223 (59.19%), Postives = 169/223 (75.78%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. Swiss-Prot
Match: CSPLN_POPTR (CASP-like protein 3A2 OS=Populus trichocarpa GN=POPTRDRAFT_751837 PE=2 SV=2) HSP 1 Score: 231.1 bits (588), Expect = 1.1e-59 Identity = 125/216 (57.87%), Postives = 161/216 (74.54%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. Swiss-Prot
Match: CSPL7_PICSI (CASP-like protein 3A1 OS=Picea sitchensis PE=2 SV=1) HSP 1 Score: 177.6 bits (449), Expect = 1.5e-43 Identity = 95/205 (46.34%), Postives = 135/205 (65.85%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. TrEMBL
Match: A0A0A0KCU6_CUCSA (CASP-like protein OS=Cucumis sativus GN=Csa_7G453000 PE=3 SV=1) HSP 1 Score: 337.0 bits (863), Expect = 1.7e-89 Identity = 175/216 (81.02%), Postives = 189/216 (87.50%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. TrEMBL
Match: A0A151SHG8_CAJCA (CASP-like protein OS=Cajanus cajan GN=KK1_000336 PE=3 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 2.9e-62 Identity = 129/199 (64.82%), Postives = 161/199 (80.90%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. TrEMBL
Match: V7AQS0_PHAVU (CASP-like protein OS=Phaseolus vulgaris GN=PHAVU_010G146500g PE=3 SV=1) HSP 1 Score: 241.1 bits (614), Expect = 1.2e-60 Identity = 127/210 (60.48%), Postives = 163/210 (77.62%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. TrEMBL
Match: A0A0L9TB84_PHAAN (CASP-like protein OS=Phaseolus angularis GN=LR48_Vigan406s019400 PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 5.2e-59 Identity = 126/210 (60.00%), Postives = 161/210 (76.67%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. TrEMBL
Match: A0A0S3T0N8_PHAAN (CASP-like protein OS=Vigna angularis var. angularis GN=Vigan.09G214200 PE=3 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 5.2e-59 Identity = 126/210 (60.00%), Postives = 161/210 (76.67%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. TAIR10
Match: AT3G16300.1 (AT3G16300.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 164.5 bits (415), Expect = 7.4e-41 Identity = 84/169 (49.70%), Postives = 117/169 (69.23%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. TAIR10
Match: AT1G79780.1 (AT1G79780.1 Uncharacterised protein family (UPF0497)) HSP 1 Score: 152.1 bits (383), Expect = 3.8e-37 Identity = 81/165 (49.09%), Postives = 107/165 (64.85%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. NCBI nr
Match: gi|778730032|ref|XP_011659686.1| (PREDICTED: CASP-like protein 3A1 [Cucumis sativus]) HSP 1 Score: 337.0 bits (863), Expect = 2.4e-89 Identity = 175/216 (81.02%), Postives = 189/216 (87.50%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. NCBI nr
Match: gi|659124975|ref|XP_008462445.1| (PREDICTED: CASP-like protein GSVIVT00034332001 [Cucumis melo]) HSP 1 Score: 332.4 bits (851), Expect = 5.8e-88 Identity = 175/216 (81.02%), Postives = 190/216 (87.96%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. NCBI nr
Match: gi|1012342969|gb|KYP54161.1| (UPF0497 membrane protein 14 [Cajanus cajan]) HSP 1 Score: 246.5 bits (628), Expect = 4.2e-62 Identity = 129/199 (64.82%), Postives = 161/199 (80.90%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. NCBI nr
Match: gi|225442513|ref|XP_002284038.1| (PREDICTED: CASP-like protein 3A1 [Vitis vinifera]) HSP 1 Score: 242.7 bits (618), Expect = 6.1e-61 Identity = 130/206 (63.11%), Postives = 166/206 (80.58%), Query Frame = 1
BLAST of CmoCh08G006880.1 vs. NCBI nr
Match: gi|593266936|ref|XP_007135646.1| (hypothetical protein PHAVU_010G146500g [Phaseolus vulgaris]) HSP 1 Score: 241.1 bits (614), Expect = 1.8e-60 Identity = 127/210 (60.48%), Postives = 163/210 (77.62%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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