CmoCh08G002490.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAAGGGAAGAAAGAGAAGGGGGGTAGAGCGAGTGCCTTTAATTGCGCACACATGGATTCCGATTACCAATGTGAATTCATGAGCATGCTATCAAAGCCAGTTGGGACCCAATTCAAGCGCCAAAAAGTTGATTATATTTACGAATTTCCCGATAATCATGGCGTATTTCAGTGCCTCCTGTCATGAGGTTGTAGTTATAGTCATTACTATCCATTTCGGACCGCACAAAAACCTCCATTGCAAGCTTCTTCATCTTCTTCATCTGCATCAATGGCGAGTGACGAGGATCAGGGCGGTGAGGAGTACTTGTACAAGATTGTCCTTATTGGCGACTCTGCTGTGGGCAAATCGAACCTCCTCTCGCGATTTGCTCGGAATGAGTTCGATACCAACTCCAAGGCTACAATCGGCGTCGAGTTTCAGACTCAAGTGGTGGAAATCGACGGCAAAGAGGTGAAGGCTCAGATCTGGGATACTGCTGGCCAGGAGCGATTTAGGGCTGTCACTTCGGCCTACTATCGCGGCGCTTTTGGTGCGCTGATTGTCTACGATATCAGCCGTCGGACAACCTTCGACAGTGTCAAGCGGTGGCTCGACGAGCTTGGCGGTACGTTCTCTTTGAATCTTTCTGGTTGCTTTACTGTTCAGTTTGTTTGCAGAAGCTTTATAAATCCAATTTTTTGCTTTTGTGTACTAGAATCTGTCGCTGGTTTTGTTTATTGATTCTTTGATTTGTGTAGAACTGTAAGTAAGACAAGAATGATGGAAAATTCAGGGTTATTGTTCATTCTTCTTTTGTTGGGGGAAAGCTGGATTAGATTGGTGAAAAAGGTTGAATCATGTGTTCTTTTACTTCTTAAAGTTGCTTCAGTGAGTAGTTTTTAATGTACTAAAGGATGAACAGTGTTGAGGTTTGCCAAATTTACATCCAAGAGAATTGTATATTGTTTAGACCCGTGTACTGGTTGAAATCAGATACAAAAGGAAAAGTGTGGAGGGACCTTAATTGTTAATTTTGTTCACTTTGAGCATAAGTTCTTATGACTTTGGACTTCCCCAAAAGGCCTCATACCAATGGAGAGAGTATTCTTTGATCATAAACCTATGATCATTCCCTAAATTAGTGGATGTGGGACTTTCATCATCCAACACCTCCCCTCGAACAAAGTACGCCTCCCCTTAATCGAGACTCGACTTCTTTTTCTTTTGGAGTCTTAGTCATTTTTACTATGCCTTCGAGGAAGCTCGACTCCTTTTCTTTTGGAGTCCTTTGTTCGACATTTGAGGATTTACCAATCTATTGGCACGACTAAGTTTAGGGCATGACTCTAATACCATATTAGATGAACACGACTCTCCACCATGGTATGATATTGTCCACTTTGAGCATAAGTTCTCACGGTTTTGCTTTGGGCTTCTCCAGAAGGCCTCACTCCACGTCGAGGGACTTTCAATATCTAGTCAAATTTAGGGCAACTGCTTGTCAACCCATTATAGTGAAGTTTGAACTTCAGTTTGTGGCATTTGAAGGTATTACGGAATAGTTGCTTAGTCGGTCCAGGCCTATCCTAACAAGTGACTAGATGTTAGTTACTTATTGTTTTTTTTTTTAGTTCAACCATCAACATACGTTTTGATCTCCAATTTATGCCTTAACCAAATGAACTTTGCTTAGGTTGGTAGGGGTTAGTCACCATTGAATCAAGGACCTAATAACTTCTTTTTCCAAAATTTGAATGGTATGCTTTCTCATTTGAAAATGAATAAGAAACCAATGGATATATTTTTTAGTCTCTATATTTCACGATGTTGTCCTGTAACAACCTAAGTCTACCGCTACCAAATATTGTATTCTTGGGTTTTTCCCTTGGCTTCCTTTTCAGAGTTTCAAAGGAGAAGTTTCCACACCTTTATAAGGAATGCTTCATTTTCATATGAGAAGTTTCCACGCTTACCCTTTGCTTCCTTCTCAAAGTCTTAAAGGATAAGTTTCCACACTCTTACAAGGAATGCTTCATTTTCATAGAAGTTTCCACATTTTCCCTGGCTCCCTTCTCAGAGTTTCAAAGGAGAAATTTCCACACCCTTATAAGGAATGCTTCATTTTCATAGAAGTTTGCACGTTTTCTCTTAGCTCCCTTCTCAAAGTTTCAAAGGAGAAGTTTCTACACCCTTATAAGGAATGCTTCATTTTCATAGGAGAAGTTTCCACACCTTTATAAGGAACGATGCTTCATTTTCATTGGGCATCTTCTCCGATGTCTGGCTCTGATACCATTTGTAATGGCTAGCCCACTAGCAAACATTGTCTTCTTTGAGCTTTTCCTTCTGGGATTTCCTCAAAGTTTTTAAATGCATATACTAGGAGGAGAGGTTTCCATACTCTTATAAGGGATGATTCGTTCTTCTCTCAAACCAACGTGGAATCTCACATATCAACCCTAAACTAAACTAAATTTTAATGTTAATAGTGATATTGCTTATACTTGAACATAGTTGTTTCTCTTGCTAGGGTATGGGTTACATTGACATCTTTGTATCTCTAGATAGGTCTATAAAGCAAGCAAGAAACCATCCCTCTGTGAACATGATCTCATACCTTCATTGTGGTTTGCAATTTGTAAGATTATAATAAACTAACGTATCCCTCCCGAAACGATTACAGTTCATTGTGATACCGCGACGGTGAAGATGCTGGTAGGAAACAAGTGTGATTTGGAGAACATCAGAGATGTGAGTGTGGAGGAAGGCAAGAATCTGGCAGAAGAGGAAGGACTGTTCTTCATGGAGACCTCTGCTCTTGATTCCACCAATGTCAGAACAGCCTTTGAGCTTGTGATTAAGGAGATTTACAACAATGTCAGCAGGAAAGTCCTCAACTCTGATTCTTATAAAGCTGAGCTTTCTGTAAATCGAGTAAGTTTGGCTGATGGGGCTGCCTCCTCCAAAAAAGGCTTCTCTTGTTGTTCTCAATGAGTTTCGAATTTTTTTTTTTTTTTCGGGTCAAATTTTAAAAAATATTTAATAGGCCAAATTCCTGTCAGACGTATTGAAAGTGAGATTTATTAGATATCAAATGGAAAGTTTATGGACTTATTAGTTACATTTAAAAATTTAAAAATATATTACACATCTTAAAAGATGTTCACGAGCTAAACTTGAAATTTAACGTTTTTTTTTAGTGTCATGGTTTTGTGGTGTTCATGAATACTCAAATGTGGGTATGTTTGGCTACAAAAGTTTTAAAAGGACATTGTATTCATTACTTATAAATTTATGATCTTTCTCTTG AAAAGGGAAGAAAGAGAAGGGGGGTAGAGCGAGTGCCTTTAATTGCGCACACATGGATTCCGATTACCAATGTGAATTCATGAGCATGCTATCAAAGCCAGTTGGGACCCAATTCAAGCGCCAAAAAGTTGATTATATTTACGAATTTCCCGATAATCATGGCGTATTTCAGTGCCTCCTGTCATGAGGTTGTAGTTATAGTCATTACTATCCATTTCGGACCGCACAAAAACCTCCATTGCAAGCTTCTTCATCTTCTTCATCTGCATCAATGGCGAGTGACGAGGATCAGGGCGGTGAGGAGTACTTGTACAAGATTGTCCTTATTGGCGACTCTGCTGTGGGCAAATCGAACCTCCTCTCGCGATTTGCTCGGAATGAGTTCGATACCAACTCCAAGGCTACAATCGGCGTCGAGTTTCAGACTCAAGTGGTGGAAATCGACGGCAAAGAGGTGAAGGCTCAGATCTGGGATACTGCTGGCCAGGAGCGATTTAGGGCTGTCACTTCGGCCTACTATCGCGGCGCTTTTGGTGCGCTGATTGTCTACGATATCAGCCGTCGGACAACCTTCGACAGTGTCAAGCGGTGGCTCGACGAGCTTGGCGTTCATTGTGATACCGCGACGGTGAAGATGCTGGTAGGAAACAAGTGTGATTTGGAGAACATCAGAGATGTGAGTGTGGAGGAAGGCAAGAATCTGGCAGAAGAGGAAGGACTGTTCTTCATGGAGACCTCTGCTCTTGATTCCACCAATGTCAGAACAGCCTTTGAGCTTGTGATTAAGGAGATTTACAACAATGTCAGCAGGAAAGTCCTCAACTCTGATTCTTATAAAGCTGAGCTTTCTGTAAATCGAGTAAGTTTGGCTGATGGGGCTGCCTCCTCCAAAAAAGGCTTCTCTTGTTGTTCTCAATGAGTTTCGAATTTTTTTTTTTTTTTCGGGTCAAATTTTAAAAAATATTTAATAGGCCAAATTCCTGTCAGACGTATTGAAAGTGAGATTTATTAGATATCAAATGGAAAGTTTATGGACTTATTAGTTACATTTAAAAATTTAAAAATATATTACACATCTTAAAAGATGTTCACGAGCTAAACTTGAAATTTAACGTTTTTTTTTAGTGTCATGGTTTTGTGGTGTTCATGAATACTCAAATGTGGGTATGTTTGGCTACAAAAGTTTTAAAAGGACATTGTATTCATTACTTATAAATTTATGATCTTTCTCTTG ATGGCGAGTGACGAGGATCAGGGCGGTGAGGAGTACTTGTACAAGATTGTCCTTATTGGCGACTCTGCTGTGGGCAAATCGAACCTCCTCTCGCGATTTGCTCGGAATGAGTTCGATACCAACTCCAAGGCTACAATCGGCGTCGAGTTTCAGACTCAAGTGGTGGAAATCGACGGCAAAGAGGTGAAGGCTCAGATCTGGGATACTGCTGGCCAGGAGCGATTTAGGGCTGTCACTTCGGCCTACTATCGCGGCGCTTTTGGTGCGCTGATTGTCTACGATATCAGCCGTCGGACAACCTTCGACAGTGTCAAGCGGTGGCTCGACGAGCTTGGCGTTCATTGTGATACCGCGACGGTGAAGATGCTGGTAGGAAACAAGTGTGATTTGGAGAACATCAGAGATGTGAGTGTGGAGGAAGGCAAGAATCTGGCAGAAGAGGAAGGACTGTTCTTCATGGAGACCTCTGCTCTTGATTCCACCAATGTCAGAACAGCCTTTGAGCTTGTGATTAAGGAGATTTACAACAATGTCAGCAGGAAAGTCCTCAACTCTGATTCTTATAAAGCTGAGCTTTCTGTAAATCGAGTAAGTTTGGCTGATGGGGCTGCCTCCTCCAAAAAAGGCTTCTCTTGTTGTTCTCAATGA
BLAST of CmoCh08G002490.1 vs. Swiss-Prot
Match: RAA5B_ARATH (Ras-related protein RABA5b OS=Arabidopsis thaliana GN=RABA5B PE=2 SV=1) HSP 1 Score: 339.7 bits (870), Expect = 2.3e-92 Identity = 175/214 (81.78%), Postives = 193/214 (90.19%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. Swiss-Prot
Match: RAA5E_ARATH (Ras-related protein RABA5e OS=Arabidopsis thaliana GN=RABA5E PE=2 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 4.8e-90 Identity = 169/215 (78.60%), Postives = 189/215 (87.91%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. Swiss-Prot
Match: RAA5C_ARATH (Ras-related protein RABA5c OS=Arabidopsis thaliana GN=RABA5C PE=1 SV=1) HSP 1 Score: 328.6 bits (841), Expect = 5.3e-89 Identity = 164/213 (77.00%), Postives = 187/213 (87.79%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. Swiss-Prot
Match: RAA5D_ARATH (Ras-related protein RABA5d OS=Arabidopsis thaliana GN=RABA5D PE=1 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 6.4e-87 Identity = 167/216 (77.31%), Postives = 191/216 (88.43%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. Swiss-Prot
Match: RAA5A_ARATH (Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2 SV=1) HSP 1 Score: 266.2 bits (679), Expect = 3.2e-70 Identity = 144/216 (66.67%), Postives = 169/216 (78.24%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. TrEMBL
Match: A0A0A0K5A2_CUCSA (RAB11G OS=Cucumis sativus GN=Csa_7G368110 PE=4 SV=1) HSP 1 Score: 401.0 bits (1029), Expect = 9.3e-109 Identity = 203/215 (94.42%), Postives = 210/215 (97.67%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. TrEMBL
Match: A0A061DLV5_THECC (RAB GTPase A5B OS=Theobroma cacao GN=TCM_002700 PE=4 SV=1) HSP 1 Score: 365.5 bits (937), Expect = 4.3e-98 Identity = 184/213 (86.38%), Postives = 201/213 (94.37%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. TrEMBL
Match: A0A0D2VJK7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_N003900 PE=4 SV=1) HSP 1 Score: 359.0 bits (920), Expect = 4.0e-96 Identity = 179/213 (84.04%), Postives = 201/213 (94.37%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. TrEMBL
Match: A0A0D2NCZ6_GOSRA (Uncharacterized protein (Fragment) OS=Gossypium raimondii GN=B456_001G229200 PE=4 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 2.6e-95 Identity = 179/215 (83.26%), Postives = 198/215 (92.09%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. TrEMBL
Match: B9GQQ0_POPTR (GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0002s25100g PE=4 SV=1) HSP 1 Score: 353.6 bits (906), Expect = 1.7e-94 Identity = 176/212 (83.02%), Postives = 198/212 (93.40%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. TAIR10
Match: AT3G07410.1 (AT3G07410.1 RAB GTPase homolog A5B) HSP 1 Score: 339.7 bits (870), Expect = 1.3e-93 Identity = 175/214 (81.78%), Postives = 193/214 (90.19%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. TAIR10
Match: AT1G05810.1 (AT1G05810.1 RAB GTPase homolog A5E) HSP 1 Score: 332.0 bits (850), Expect = 2.7e-91 Identity = 169/215 (78.60%), Postives = 189/215 (87.91%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. TAIR10
Match: AT2G43130.1 (AT2G43130.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein) HSP 1 Score: 328.6 bits (841), Expect = 3.0e-90 Identity = 164/213 (77.00%), Postives = 187/213 (87.79%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. TAIR10
Match: AT2G31680.1 (AT2G31680.1 RAB GTPase homolog A5D) HSP 1 Score: 321.6 bits (823), Expect = 3.6e-88 Identity = 167/216 (77.31%), Postives = 191/216 (88.43%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. TAIR10
Match: AT5G47520.1 (AT5G47520.1 RAB GTPase homolog A5A) HSP 1 Score: 266.2 bits (679), Expect = 1.8e-71 Identity = 144/216 (66.67%), Postives = 169/216 (78.24%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. NCBI nr
Match: gi|449463200|ref|XP_004149322.1| (PREDICTED: ras-related protein RABA5e [Cucumis sativus]) HSP 1 Score: 401.0 bits (1029), Expect = 1.3e-108 Identity = 203/215 (94.42%), Postives = 210/215 (97.67%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. NCBI nr
Match: gi|659116458|ref|XP_008458081.1| (PREDICTED: ras-related protein RABA5b [Cucumis melo]) HSP 1 Score: 398.3 bits (1022), Expect = 8.6e-108 Identity = 202/212 (95.28%), Postives = 207/212 (97.64%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. NCBI nr
Match: gi|590713362|ref|XP_007049622.1| (RAB GTPase A5B [Theobroma cacao]) HSP 1 Score: 365.5 bits (937), Expect = 6.2e-98 Identity = 184/213 (86.38%), Postives = 201/213 (94.37%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. NCBI nr
Match: gi|823266802|ref|XP_012466092.1| (PREDICTED: ras-related protein RABA5e-like [Gossypium raimondii]) HSP 1 Score: 359.0 bits (920), Expect = 5.8e-96 Identity = 179/213 (84.04%), Postives = 201/213 (94.37%), Query Frame = 1
BLAST of CmoCh08G002490.1 vs. NCBI nr
Match: gi|823127027|ref|XP_012492242.1| (PREDICTED: ras-related protein RABA5e-like [Gossypium raimondii]) HSP 1 Score: 356.3 bits (913), Expect = 3.8e-95 Identity = 179/215 (83.26%), Postives = 198/215 (92.09%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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