CmoCh08G002440.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh08G002440.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Peptidyl-prolyl cis-trans isomerase
Location	Cmo_Chr08 : 1483536 .. 1487198 (-)
Sequence length	790

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATCAATAACAAAGATTTATACAATTTCTGATATGTTGAAAGATTTTCAATATGATCGGTGGAGATAACGAAAATGTCTGAAATGTAGCCCGATCACCGCTTCTTCTGACGCGTCTCTCTAGATTTGCGACGAATCAGCCAATTTTTTTGGATCAGGTAATGAAAATTAGTTTGTTTAATTGTTAATCTGCTTCTTATTTCCCTTTACGAGATATTATTATTTGGATTTTAGCAATCGATCAACACAATCGCACTCTCAGAACAAATTCCAGGTGAATAATGAAGGCTTCTCTAATTTTCTTCTTGCTTGCGTGCACTTCAGGTATGCTATTCTATTGTATTGTGATCGTAGTTCGTCATAAATCGGTTGTCGTTCTTCCGATTCCATTTAATGGATTCATTTTTGTTGGTGGTTTGAATTAATTTCAGTCTACGCGATGTCGGATGAAGATGTAACTGAGTTACAGATTGATGTTACGGTAATTTGTTTATTTTATCTATTATTTCAGAAATTGGTTCTGATTTTTCGTACATTATTCCTTTTGCTATGAATCTGGAGGTCTCTCCATTTTCAAGTTTGATAGGAATTTAACGATCTTGGATACTAACGAATGGATTTTATGTTCTACAAGTTGTTCTTGTCTAGTGAAAGCTCTATGGTCACTGACACTGTAATATTACAGACTTATGAACGTATATTTGACTTGCATGTTGTTAAAATGAGATCCATATGTCCAATGAAAAGTGTAAAGTTGTGTTAGTTTCTGGATTGTGTTGAGATCAATTTATGAGATGGAGTTTTCCCCCTGTCATAATATGAAGTGAATTTGATATGAATATGTCGTCTTCTTCACAAAAAAAATTCCTCTGAGACCTTCATTGAGCTGTTCCCGTGGGGTAGGAAAATGAATTGTGGAACTTTTCTTTGAAATGATTCATAGGTCCGACTCGCTAAGGCTTGACTAAGAGTCTCATTAGGGCATCCTCCCCCACCATTCCGGCCTATTATTCATAGGGATTTGACCGATGGGGAAGGTATTGATCCCATTCATTAGTTCGACATTATTTGAGGAAGTAGGTCAACATGCTTGAATTGATTCCTAGCCTTGATGCTAGTATAACGCAATTGAACTTTTCTTTTGGTAACATTTTGAGCCTAAGTCCCAGGTGGGAAGTTGAGCCATGAGAATCAATAACCACTGATAATGGTCTTATAAAGTTGTAATTTCTGCAATTTTGTGAGAAAACGTTGAATGGTCAGATCTTTTGGTTACTCTCATACTTTTGTATCGCGAAATTAACGTTAGCTGGTAATGTGGTAAAGAACTGCTTGACGAAGAGGCAGTTAGTCTTTTCCATTATTGCTCAGACAAACATCTACTATATGCTAAAATATGAATTTGGTTTCATGAGATCCGTGTCTGCAAGTTGCGTTTTTTCCCTAGCTTTTCACAGTTCCAATGAATGTTTGATATTGCACTGCCAGCCTTTAGATTCTGGAATGTGTTACTCTGGACCACTCCCCAAGCCTTTTCTTGCTAATTCTTTGTTTTGATGCTTTTTTTCTTTTCTCTTTGTTTCTTCTTTTGCAGAGTAGGCCATCATCTTGTGATATTGAAACTCGTAAAGGAGATAAAATCAAAGTTCATTATCGTGTAAGTTGAACAATATTTTAGTTCGACTCTTGCTTTTGTGTGTGCGCATAAAACAAACACGGTCAATTTGTTAATGAGTCAATGAATTATAAAGGAAGAATTGGGGAGATGTCAAGAGCTGGGAAGGTAAGGCACTGCCTCTGTTAGAAAAAGGGCATTCTTGATTTCACGACGGATGTTGTAATGTTCACAAATAAAACTAACTGGGTTACACCAGAATTTGAATTTGTCTGAGAACTTTATCATTCAGTATATTTGAAGGAATGATCCCGAATTTGAATCATTACACAGTTGCTGCTGATACAAACATGATAGATTGATGATTTTCACTGATATGGTTATGAACACAGTCGATTCATTTATAATTAAGATTTTTCTTTTAGCTCCGCACATCTTCTTGACTGATATCTGTTATCCTATGATTCAATAGGGGATGTTCACAGATGGGACTGTTTTTGACTCTAGTTTTGAAAGGGGTGTCCCATTTGAGTTTCAGCTTGGCGCTGGTAAAGTAATTAAAGGTATTTGTGCACAAAACACATACATCTAGTAATTAGTAGAAAAGTTTCTGGTGCAGCCAAGATAGTTTATTTGTTCTTGTTACTATTTTTATTTTTTTTTAGTTTGAATGTTTCCATATTGTTCACCATTGTCTCGACTCATGTGTTCGAGCTCAGCTGTGGTCAAGTAACAATTCATCTTTTGTGATAGATCTCTTATGAGTTGCACCATATTAGTTAATTGGTTTATTATTCTCATAATCTATAATTAGGATATATCTTGGAACTGATGTTGGTTTAAAATCCGCTCATCTGTTCATGTTGCTTGAACTTAACAAATTGCTGTACGCTCCCTCATTTTCGCGTTTTCGCGTTTTCGCATAATTTGTTCCTTCACTCGTTCAAATTTTTCATGACCTTTGATCTGTGAACTCAAGTCTACAAAATTGTATATTAAGCTCAAAAGATCCAATAAAATGGTCATTACGCAAAGATCTGTACTGAATAAACTTTGCTAATTGCTCTGTGAATACTCATTCTGATGTTGTGCATGGGAAGTTACTGAGAGTTGAAAATTCCTTCATTTTCAGGATGGGACCAAGGATTACTAGGAATGTGCGTTGGTGAGAAACGGAAATTGACCATTCCTTCAAAGTTAGGATATGGACCGCACGGCGTTCCACCAACCATACCAGGTAATCCAAGACTACCACTTATCTATAAAGAACTCAAGCTTTTACCGAACTAGTAAGGTGTTCTCGAAAGGGGACAAACAAAGATTGAATGCACTCCTATGCCATATTTGTACAAATAGAATAGTCAATTTATACATAATGGTAAAAGGGTCCCTCTATGATCATACAAGCATGAACAAGCATGCATGAACCATTTCACGAAGTATGCATCCAGATAGCCCAAAGTCTCCGATCGTTAGCTCTCGGTCTCCAATTAAAAAACAACGTCGATGAAGATGAAATCTATGGACTCTTAGAAACATTTGCATTTAATCCTTGACATTAGTTACAAGTGTTCTGAAAAGAAGCAACTATAAGGACTAATTATTTACATTAAGTTCACAACCCAACTCAAACGATGATGATTTGAATTTATTCACGGCTGAAGTATGTGGAGTTTTGTGTTGTTCCCTTGTTGGATTTTGAATATACAGGTGGTGTAACACTTGTCTTTGACACTGAGCTTGTTGCTATTAATGGGAAACCATCAAGTGGTGGAAACTCAGTCAAGGAAGAGAGTGATGATCTATAAGTGAAACCACCTATTCTACCATTGGAGCCCCTTCGGTTGAGATGCTTATCAATCTTCTCCAACTTTAGTTTCTTCCATTTTTCATACTCTTTTCACTTTCTACTTTTCCTTATAGCTACTTTAGAGTACGAGTTTTCGATTTATTTGCCTCTCGTTTAAGTTTTGATGAGATGCTAATTTACGATATTTATTTTGAATTCTTAGAATTAATGAAGAGCAACTCTCGATTTATTTGCCGCT

mRNA sequence

AAAATCAATAACAAAGATTTATACAATTTCTGATATGTTGAAAGATTTTCAATATGATCGGTGGAGATAACGAAAATGTCTGAAATGTAGCCCGATCACCGCTTCTTCTGACGCGTCTCTCTAGATTTGCGACGAATCAGCCAATTTTTTTGGATCAGCAATCGATCAACACAATCGCACTCTCAGAACAAATTCCAGGTGAATAATGAAGGCTTCTCTAATTTTCTTCTTGCTTGCGTGCACTTCAGTCTACGCGATGTCGGATGAAGATGTAACTGAGTTACAGATTGATGTTACGAGTAGGCCATCATCTTGTGATATTGAAACTCGTAAAGGAGATAAAATCAAAGTTCATTATCGTGGGATGTTCACAGATGGGACTGTTTTTGACTCTAGTTTTGAAAGGGGTGTCCCATTTGAGTTTCAGCTTGGCGCTGGTAAAGTAATTAAAGGTGGTGTAACACTTGTCTTTGACACTGAGCTTGTTGCTATTAATGGGAAACCATCAAGTGGTGGAAACTCAGTCAAGGAAGAGAGTGATGATCTATAAGTGAAACCACCTATTCTACCATTGGAGCCCCTTCGGTTGAGATGCTTATCAATCTTCTCCAACTTTAGTTTCTTCCATTTTTCATACTCTTTTCACTTTCTACTTTTCCTTATAGCTACTTTAGAGTACGAGTTTTCGATTTATTTGCCTCTCGTTTAAGTTTTGATGAGATGCTAATTTACGATATTTATTTTGAATTCTTAGAATTAATGAAGAGCAACTCTCGATTTATTTGCCGCT

Coding sequence (CDS)

ATGAAGGCTTCTCTAATTTTCTTCTTGCTTGCGTGCACTTCAGTCTACGCGATGTCGGATGAAGATGTAACTGAGTTACAGATTGATGTTACGAGTAGGCCATCATCTTGTGATATTGAAACTCGTAAAGGAGATAAAATCAAAGTTCATTATCGTGGGATGTTCACAGATGGGACTGTTTTTGACTCTAGTTTTGAAAGGGGTGTCCCATTTGAGTTTCAGCTTGGCGCTGGTAAAGTAATTAAAGGTGGTGTAACACTTGTCTTTGACACTGAGCTTGTTGCTATTAATGGGAAACCATCAAGTGGTGGAAACTCAGTCAAGGAAGAGAGTGATGATCTATAA

Homology

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BLAST of CmoCh08G002440.1 vs. Swiss-Prot
Match: FK151_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP15-1 OS=Arabidopsis thaliana GN=FKBP15-1 PE=2 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-25
Identity = 68/145 (46.90%), Postives = 77/145 (53.10%), Query Frame = 1


Query: 1   MKA-SLIFFLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGT 60
           MKA   +  L   T  YA    DVTELQI V  +P  CD++  KGDKIKVHYRG  TDGT
Sbjct: 8   MKAVGFLLLLTILTLAYAKKSGDVTELQIGVKYKPQKCDLQAHKGDKIKVHYRGKLTDGT 67

Query: 61  VFDSSFERGVPFEFQLGAGKV-----------------------------------IKGG 110
           VFDSSFERG P EF+LG G+V                                   I GG
Sbjct: 68  VFDSSFERGDPIEFELGTGQVIPGWDQGLLGACVGEKRKLKIPSKLGYGDNGSPPKIPGG 127

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BLAST of CmoCh08G002440.1 vs. Swiss-Prot
Match: FK152_ARATH (Peptidyl-prolyl cis-trans isomerase FKBP15-2 OS=Arabidopsis thaliana GN=FKBP15-2 PE=2 SV=2)

HSP 1 Score: 114.8 bits (286), Expect = 6.3e-25
Identity = 64/144 (44.44%), Postives = 80/144 (55.56%), Query Frame = 1


Query: 5   LIFFLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGTVFDSS 64
           LIFF L     +A    DV+ELQI V  +P +C+++  KGD IKVHYRG  TDGTVFDSS
Sbjct: 13  LIFFSLISLQGFAKKTGDVSELQIGVKFKPKTCEVQAHKGDTIKVHYRGKLTDGTVFDSS 72

Query: 65  FERGVPFEFQLGAGKVIK-----------------------------------GGVTLVF 114
           FERG PFEF+LG+G+VIK                                   GG TL+F
Sbjct: 73  FERGDPFEFKLGSGQVIKGWDQGLLGACVGEKRKLKIPAKLGYGEQGSPPTIPGGATLIF 132

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BLAST of CmoCh08G002440.1 vs. Swiss-Prot
Match: FKB15_VICFA (FK506-binding protein 2 OS=Vicia faba GN=FKBP15 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.5e-23
Identity = 64/143 (44.76%), Postives = 77/143 (53.85%), Query Frame = 1


Query: 5   LIF--FLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGTVFD 64
           LIF  F++A   V A S  DVTELQI V  +P+SC+++  KGDK+KVHYRG  TDGTVFD
Sbjct: 8   LIFTIFIIASALVAAKSAADVTELQIGVKYKPASCEVQAHKGDKVKVHYRGKLTDGTVFD 67

Query: 65  SSFERGVPFEFQLGAGKVIK-----------------------------------GGVTL 111
           SSFER  P +F+LG G+VIK                                   GG TL
Sbjct: 68  SSFERNSPIDFELGGGQVIKGWDQGLLGMCLGEKRKLKIPAKLGYGEQGSPPTIPGGATL 127

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BLAST of CmoCh08G002440.1 vs. Swiss-Prot
Match: FKBP2_NEUCR (FK506-binding protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fkr-5 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-14
Identity = 52/127 (40.94%), Postives = 67/127 (52.76%), Query Frame = 1


Query: 9   LLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMF-TDGTVFDSSFER 68
           LLA  +V  ++ E   EL IDVT  P  CD +TRKGDKI VHYRG   ++G  FD+S++R
Sbjct: 10  LLASATVGVLAAE---ELGIDVTV-PVECDRKTRKGDKINVHYRGTLQSNGQQFDASYDR 69

Query: 69  GVPFEFQLGAGKVIKG----------------------------------GVTLVFDTEL 101
           G PF F+LG G+VIKG                                  G TL+F+TEL
Sbjct: 70  GTPFSFKLGGGQVIKGWDEGLVDMCIGEKRTLTVPPSYGYGQRSIGPIPAGSTLIFETEL 129

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BLAST of CmoCh08G002440.1 vs. Swiss-Prot
Match: FKBP2_DICDI (FK506-binding protein 2 OS=Dictyostelium discoideum GN=fkbp2 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.9e-13
Identity = 32/59 (54.24%), Postives = 43/59 (72.88%), Query Frame = 1


Query: 25 ELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGTVFDSSFERGVPFEFQLGAGKVIKG 84
          +LQI V  RP  C ++T+ GDK+K+HY G   +G  FDSS +RG PFEF++G G+VIKG
Sbjct: 26 KLQIGVKYRPDECTVKTKSGDKLKIHYTGTLLNGDKFDSSVDRGTPFEFKIGVGQVIKG 84

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BLAST of CmoCh08G002440.1 vs. TrEMBL
Match: A0A0A0K598_CUCSA (Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_7G363070 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.0e-33
Identity = 82/150 (54.67%), Postives = 96/150 (64.00%), Query Frame = 1


Query: 1   MKASLIF-FLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGT 60
           MKASL+F FLL CT +YA + +DVTELQI VT RP+SCDI+  KGD+IKVHYRG  TDGT
Sbjct: 1   MKASLVFLFLLGCTLIYAKTTKDVTELQIGVTGRPASCDIQAHKGDRIKVHYRGKLTDGT 60

Query: 61  VFDSSFERGVPFEFQLGAGKVIK-----------------------------------GG 115
           VFDSSFERG P EF+LG+G+VIK                                   GG
Sbjct: 61  VFDSSFERGDPIEFELGSGQVIKGWDQGLLGMCVGEKRKLKIPAKLGYGPQGSPPTIPGG 120

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BLAST of CmoCh08G002440.1 vs. TrEMBL
Match: A0A103Y758_CYNCS (Peptidyl-prolyl cis-trans isomerase OS=Cynara cardunculus var. scolymus GN=Ccrd_017911 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 7.3e-28
Identity = 66/104 (63.46%), Postives = 76/104 (73.08%), Query Frame = 1


Query: 3   ASLIFFLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGTVFD 62
           AS I  LL   +V +    DVTELQI V  +P+SC I+  KGDKIKVHYRG  TDG VFD
Sbjct: 9   ASSISILLIAATVVSAYSRDVTELQISVQHKPTSCTIQAHKGDKIKVHYRGKLTDGKVFD 68

Query: 63  SSFERGVPFEFQLGAGKVIKGGVTLVFDTELVAINGK-PSSGGN 106
           SSFERG P EF LG+G+VIKGG TL+FDTEL+A+NGK P  G N
Sbjct: 69  SSFERGTPLEFVLGSGQVIKGGATLIFDTELIAVNGKRPGEGDN 112

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BLAST of CmoCh08G002440.1 vs. TrEMBL
Match: A0A067LA05_JATCU (Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_15141 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 2.8e-27
Identity = 74/145 (51.03%), Postives = 86/145 (59.31%), Query Frame = 1


Query: 2   KASLIFFLLACTS-VYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGTV 61
           KA++IFF LA  + V A    DVTELQI V  +P SC+I+  KGD+IKVHYRG  TDGTV
Sbjct: 8   KAAIIFFFLALFALVSAKKSGDVTELQIGVKHKPKSCEIQAHKGDRIKVHYRGKLTDGTV 67

Query: 62  FDSSFERGVPFEFQLGAGKVIK-----------------------------------GGV 111
           FDSSFERG P EF+LG+G+VIK                                   GG 
Sbjct: 68  FDSSFERGDPIEFELGSGQVIKGWDQGLLGMCVGEKRKLKIPAKLGYGEQGSPPKIPGGA 127

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BLAST of CmoCh08G002440.1 vs. TrEMBL
Match: A0A0J8ER90_BETVU (Peptidyl-prolyl cis-trans isomerase OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g168190 PE=4 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 4.7e-27
Identity = 71/146 (48.63%), Postives = 87/146 (59.59%), Query Frame = 1


Query: 4   SLIFFLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGTVFDS 63
           +++ FL+  T VYA   +DV ELQI V  +P+SC+I+  KGDKIKVHYRG  TDGTVFDS
Sbjct: 6   AILLFLVLITLVYAKKSDDVKELQIGVKYKPASCEIKAHKGDKIKVHYRGQLTDGTVFDS 65

Query: 64  SFERGVPFEFQLGAGKVIK-----------------------------------GGVTLV 114
           SFERG P EFQLG+G+VIK                                   GG TL+
Sbjct: 66  SFERGEPIEFQLGSGQVIKGWDQGLLGMCVGEKRKLKIPSKLGYGDQGSPPTIPGGATLI 125

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BLAST of CmoCh08G002440.1 vs. TrEMBL
Match: A0A0D3BD94_BRAOL (Peptidyl-prolyl cis-trans isomerase OS=Brassica oleracea var. oleracea GN=FKBP15-1 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.0e-26
Identity = 73/145 (50.34%), Postives = 84/145 (57.93%), Query Frame = 1


Query: 1   MKASLIFFLLAC-TSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGT 60
           MKA+ +  LLA  TSVYA    DVTELQI V  +P +CD +  KGDKIKVHYRG  TDGT
Sbjct: 9   MKAAGVLVLLAVLTSVYAKKSGDVTELQIGVKFKPKTCDAQAHKGDKIKVHYRGKLTDGT 68

Query: 61  VFDSSFERGVPFEFQLGAGKV-----------------------------------IKGG 110
           VFDSSFERG P EF+LG+G+V                                   I GG
Sbjct: 69  VFDSSFERGDPIEFELGSGQVIPGWDQGLLGACVGEKRKLKIPSKLGYGDNGSPPKIPGG 128

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BLAST of CmoCh08G002440.1 vs. TAIR10
Match: AT3G25220.1 (AT3G25220.1 FK506-binding protein 15 kD-1)

HSP 1 Score: 116.7 bits (291), Expect = 9.4e-27
Identity = 68/145 (46.90%), Postives = 77/145 (53.10%), Query Frame = 1


Query: 1   MKA-SLIFFLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGT 60
           MKA   +  L   T  YA    DVTELQI V  +P  CD++  KGDKIKVHYRG  TDGT
Sbjct: 8   MKAVGFLLLLTILTLAYAKKSGDVTELQIGVKYKPQKCDLQAHKGDKIKVHYRGKLTDGT 67

Query: 61  VFDSSFERGVPFEFQLGAGKV-----------------------------------IKGG 110
           VFDSSFERG P EF+LG G+V                                   I GG
Sbjct: 68  VFDSSFERGDPIEFELGTGQVIPGWDQGLLGACVGEKRKLKIPSKLGYGDNGSPPKIPGG 127

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BLAST of CmoCh08G002440.1 vs. TAIR10
Match: AT5G48580.1 (AT5G48580.1 FK506- and rapamycin-binding protein 15 kD-2)

HSP 1 Score: 114.8 bits (286), Expect = 3.6e-26
Identity = 64/144 (44.44%), Postives = 80/144 (55.56%), Query Frame = 1


Query: 5   LIFFLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGTVFDSS 64
           LIFF L     +A    DV+ELQI V  +P +C+++  KGD IKVHYRG  TDGTVFDSS
Sbjct: 13  LIFFSLISLQGFAKKTGDVSELQIGVKFKPKTCEVQAHKGDTIKVHYRGKLTDGTVFDSS 72

Query: 65  FERGVPFEFQLGAGKVIK-----------------------------------GGVTLVF 114
           FERG PFEF+LG+G+VIK                                   GG TL+F
Sbjct: 73  FERGDPFEFKLGSGQVIKGWDQGLLGACVGEKRKLKIPAKLGYGEQGSPPTIPGGATLIF 132

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BLAST of CmoCh08G002440.1 vs. TAIR10
Match: AT5G48570.1 (AT5G48570.1 FKBP-type peptidyl-prolyl cis-trans isomerase family protein)

HSP 1 Score: 57.8 bits (138), Expect = 5.2e-09
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 1


Query: 43  KGDKIKVHYRGMFTDGTVFDSSFERGVPFEFQLGAGKVIKG 84
            GD+++VHY G   DGT FDSS +RG PF+F LG G VIKG
Sbjct: 64  NGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFTLGQGHVIKG 104

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BLAST of CmoCh08G002440.1 vs. TAIR10
Match: AT3G25230.2 (AT3G25230.2 rotamase FKBP 1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-08
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1


Query: 43 KGDKIKVHYRGMFTDGTVFDSSFERGVPFEFQLGAGKVIKG 84
           GD+++VHY G   DGT FDSS +R  PF+F LG G+VIKG
Sbjct: 56 NGDEVEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKG 96

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BLAST of CmoCh08G002440.1 vs. TAIR10
Match: AT5G45680.1 (AT5G45680.1 FK506-binding protein 13)

HSP 1 Score: 53.5 bits (127), Expect = 9.7e-08
Identity = 24/44 (54.55%), Postives = 29/44 (65.91%), Query Frame = 1


Query: 40  ETRKGDKIKVHYRGMFTDGTVFDSSFERGVPFEFQLGAGKVIKG 84
           E  KG  IK HY G   +G VFDSS+ RG P  F++G G+VIKG
Sbjct: 105 EAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKG 148

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BLAST of CmoCh08G002440.1 vs. NCBI nr
Match: gi|449463206|ref|XP_004149325.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP15-1 [Cucumis sativus])

HSP 1 Score: 149.8 bits (377), Expect = 2.8e-33
Identity = 82/150 (54.67%), Postives = 96/150 (64.00%), Query Frame = 1


Query: 1   MKASLIF-FLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGT 60
           MKASL+F FLL CT +YA + +DVTELQI VT RP+SCDI+  KGD+IKVHYRG  TDGT
Sbjct: 1   MKASLVFLFLLGCTLIYAKTTKDVTELQIGVTGRPASCDIQAHKGDRIKVHYRGKLTDGT 60

Query: 61  VFDSSFERGVPFEFQLGAGKVIK-----------------------------------GG 115
           VFDSSFERG P EF+LG+G+VIK                                   GG
Sbjct: 61  VFDSSFERGDPIEFELGSGQVIKGWDQGLLGMCVGEKRKLKIPAKLGYGPQGSPPTIPGG 120

[Close]

BLAST of CmoCh08G002440.1 vs. NCBI nr
Match: gi|659116449|ref|XP_008458077.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP15-1 [Cucumis melo])

HSP 1 Score: 149.4 bits (376), Expect = 3.7e-33
Identity = 82/150 (54.67%), Postives = 96/150 (64.00%), Query Frame = 1


Query: 1   MKASLIF-FLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGT 60
           MKASL+F FLL CT +YA + +DVTELQI VT RP+SCDI+  KGD+IKVHYRG  TDGT
Sbjct: 1   MKASLLFLFLLGCTLIYAKTTKDVTELQIGVTGRPASCDIQAHKGDRIKVHYRGKLTDGT 60

Query: 61  VFDSSFERGVPFEFQLGAGKVIK-----------------------------------GG 115
           VFDSSFERG P EF+LGAG+VIK                                   GG
Sbjct: 61  VFDSSFERGDPIEFELGAGQVIKGWDQGLLGMCVGEKRKLKIPAKLGYGPQGSPPTIPGG 120

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BLAST of CmoCh08G002440.1 vs. NCBI nr
Match: gi|976918604|gb|KVI03776.1| (Peptidyl-prolyl cis-trans isomerase, FKBP-type [Cynara cardunculus var. scolymus])

HSP 1 Score: 131.3 bits (329), Expect = 1.0e-27
Identity = 66/104 (63.46%), Postives = 76/104 (73.08%), Query Frame = 1


Query: 3   ASLIFFLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGTVFD 62
           AS I  LL   +V +    DVTELQI V  +P+SC I+  KGDKIKVHYRG  TDG VFD
Sbjct: 9   ASSISILLIAATVVSAYSRDVTELQISVQHKPTSCTIQAHKGDKIKVHYRGKLTDGKVFD 68

Query: 63  SSFERGVPFEFQLGAGKVIKGGVTLVFDTELVAINGK-PSSGGN 106
           SSFERG P EF LG+G+VIKGG TL+FDTEL+A+NGK P  G N
Sbjct: 69  SSFERGTPLEFVLGSGQVIKGGATLIFDTELIAVNGKRPGEGDN 112

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BLAST of CmoCh08G002440.1 vs. NCBI nr
Match: gi|802546504|ref|XP_012085211.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP15-1 [Jatropha curcas])

HSP 1 Score: 129.4 bits (324), Expect = 4.0e-27
Identity = 74/145 (51.03%), Postives = 86/145 (59.31%), Query Frame = 1


Query: 2   KASLIFFLLACTS-VYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGTV 61
           KA++IFF LA  + V A    DVTELQI V  +P SC+I+  KGD+IKVHYRG  TDGTV
Sbjct: 8   KAAIIFFFLALFALVSAKKSGDVTELQIGVKHKPKSCEIQAHKGDRIKVHYRGKLTDGTV 67

Query: 62  FDSSFERGVPFEFQLGAGKVIK-----------------------------------GGV 111
           FDSSFERG P EF+LG+G+VIK                                   GG 
Sbjct: 68  FDSSFERGDPIEFELGSGQVIKGWDQGLLGMCVGEKRKLKIPAKLGYGEQGSPPKIPGGA 127

[Close]

BLAST of CmoCh08G002440.1 vs. NCBI nr
Match: gi|731347670|ref|XP_010685106.1| (PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP15-1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 128.6 bits (322), Expect = 6.8e-27
Identity = 71/146 (48.63%), Postives = 87/146 (59.59%), Query Frame = 1


Query: 4   SLIFFLLACTSVYAMSDEDVTELQIDVTSRPSSCDIETRKGDKIKVHYRGMFTDGTVFDS 63
           +++ FL+  T VYA   +DV ELQI V  +P+SC+I+  KGDKIKVHYRG  TDGTVFDS
Sbjct: 6   AILLFLVLITLVYAKKSDDVKELQIGVKYKPASCEIKAHKGDKIKVHYRGQLTDGTVFDS 65

Query: 64  SFERGVPFEFQLGAGKVIK-----------------------------------GGVTLV 114
           SFERG P EFQLG+G+VIK                                   GG TL+
Sbjct: 66  SFERGEPIEFQLGSGQVIKGWDQGLLGMCVGEKRKLKIPSKLGYGDQGSPPTIPGGATLI 125

The following BLAST results are available for this feature:

BLAST of CmoCh08G002440.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FK151_ARATH	1.7e-25	46.90	Peptidyl-prolyl cis-trans isomerase FKBP15-1 OS=Arabidopsis thaliana GN=FKBP15-1...	[more]
FK152_ARATH	6.3e-25	44.44	Peptidyl-prolyl cis-trans isomerase FKBP15-2 OS=Arabidopsis thaliana GN=FKBP15-2...	[more]
FKB15_VICFA	4.5e-23	44.76	FK506-binding protein 2 OS=Vicia faba GN=FKBP15 PE=1 SV=1	[more]
FKBP2_NEUCR	2.9e-14	40.94	FK506-binding protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / C...	[more]
FKBP2_DICDI	1.9e-13	54.24	FK506-binding protein 2 OS=Dictyostelium discoideum GN=fkbp2 PE=3 SV=1	[more]

BLAST of CmoCh08G002440.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K598_CUCSA	2.0e-33	54.67	Peptidyl-prolyl cis-trans isomerase OS=Cucumis sativus GN=Csa_7G363070 PE=4 SV=1	[more]
A0A103Y758_CYNCS	7.3e-28	63.46	Peptidyl-prolyl cis-trans isomerase OS=Cynara cardunculus var. scolymus GN=Ccrd_...	[more]
A0A067LA05_JATCU	2.8e-27	51.03	Peptidyl-prolyl cis-trans isomerase OS=Jatropha curcas GN=JCGZ_15141 PE=4 SV=1	[more]
A0A0J8ER90_BETVU	4.7e-27	48.63	Peptidyl-prolyl cis-trans isomerase OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g1...	[more]
A0A0D3BD94_BRAOL	4.0e-26	50.34	Peptidyl-prolyl cis-trans isomerase OS=Brassica oleracea var. oleracea GN=FKBP15...	[more]

BLAST of CmoCh08G002440.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G25220.1	9.4e-27	46.90	FK506-binding protein 15 kD-1	[more]
AT5G48580.1	3.6e-26	44.44	FK506- and rapamycin-binding protein 15 kD-2	[more]
AT5G48570.1	5.2e-09	60.98	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	[more]
AT3G25230.2	1.5e-08	58.54	rotamase FKBP 1	[more]
AT5G45680.1	9.7e-08	54.55	FK506-binding protein 13	[more]

BLAST of CmoCh08G002440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463206\|ref\|XP_004149325.1\|	2.8e-33	54.67	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP15-1 [Cucumis sativus]	[more]
gi\|659116449\|ref\|XP_008458077.1\|	3.7e-33	54.67	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP15-1 [Cucumis melo]	[more]
gi\|976918604\|gb\|KVI03776.1\|	1.0e-27	63.46	Peptidyl-prolyl cis-trans isomerase, FKBP-type [Cynara cardunculus var. scolymus...	[more]
gi\|802546504\|ref\|XP_012085211.1\|	4.0e-27	51.03	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP15-1 [Jatropha curcas]	[more]
gi\|731347670\|ref\|XP_010685106.1\|	6.8e-27	48.63	PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP15-1 [Beta vulgaris subsp. vu...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001179	PPIase_FKBP_dom
IPR023566	PPIase_FKBP

Vocabulary: **Biological Process**
Term	Definition
GO:0006457	protein folding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh08G002440	CmoCh08G002440	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh08G002440.1	CmoCh08G002440.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G002440.1.three_prime_UTR.1	CmoCh08G002440.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G002440.1.CDS.5	CmoCh08G002440.1.CDS.5	CDS
CmoCh08G002440.1.CDS.4	CmoCh08G002440.1.CDS.4	CDS
CmoCh08G002440.1.CDS.3	CmoCh08G002440.1.CDS.3	CDS
CmoCh08G002440.1.CDS.2	CmoCh08G002440.1.CDS.2	CDS
CmoCh08G002440.1.CDS.1	CmoCh08G002440.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G002440.1.five_prime_UTR.2	CmoCh08G002440.1.five_prime_UTR.2	five_prime_UTR
CmoCh08G002440.1.five_prime_UTR.1	CmoCh08G002440.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh08G002440.1.exon.6	CmoCh08G002440.1.exon.6	exon
CmoCh08G002440.1.exon.5	CmoCh08G002440.1.exon.5	exon
CmoCh08G002440.1.exon.4	CmoCh08G002440.1.exon.4	exon
CmoCh08G002440.1.exon.3	CmoCh08G002440.1.exon.3	exon
CmoCh08G002440.1.exon.2	CmoCh08G002440.1.exon.2	exon
CmoCh08G002440.1.exon.1	CmoCh08G002440.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	PFAM	PF00254	FKBP_C	coord: 40..83 score: 1.2
IPR001179	FKBP-type peptidyl-prolyl cis-trans isomerase domain	PROFILE	PS50059	FKBP_PPIASE	coord: 44..83 score: 13
IPR023566	Peptidyl-prolyl cis-trans isomerase, FKBP-type	PANTHER	PTHR10516	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	coord: 22..101 score: 9.9
None	No IPR available	GENE3D	G3DSA:3.10.50.40		coord: 21..83 score: 1.6
None	No IPR available	PANTHER	PTHR10516:SF293	SUBFAMILY NOT NAMED	coord: 22..101 score: 9.9
None	No IPR available	unknown	SSF54534	FKBP-like	coord: 26..97 score: 5.11