CmoCh07G013040.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G013040.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Thioredoxin-like 3-1
Location	Cmo_Chr07 : 7263762 .. 7265771 (-)
Sequence length	1059

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACATTATTTCAATTTATAATACTAAGAAATAGTCAGAAAAATTAATTTGATTGGATGGATATGCCATCCCTTCCTCCCACGTGTGGCCCCCAACTCTCACCTTATGGATAAGCCAAGCCCTTCCCAAAACGCTCCCATTTCAATCCCAAACCCCAAAAAACCTCAAAAAAGTAAAAGAAAAAACCCCTCTTCACAGATCGAAGCCATGACCTCCTAGAGAACAAGAGGAAGAGAGGATCTACAGATATGTCTGTGTTGGCTGCGACCACTGCTCAGATTCTGTACAGCGAAGCTCATCATAATCAACACCAAATTCCGAGCAATGGGGGGAGGCGGTGTTTTGTGAACAGAGATTTTGGGTCTGTTTTATTTGGTCGGAGAAATGGAGAGCGGCGGAGGTTGCGGCGGAGGGAGTTGAAAATGGGGCCGGAAGCTGGGTTTTGGCCGGATCTGTCCCGGCCGGCGATGGTGGAGATGGAGTCCATCGAGGATTCCGAGCAGCTTGATCGGATTTTGGCTCACGCCCAGGAACTGTCTCAGCCGGTTCTTATCGACTGGTTCGTATCTCTTCCTTCTTTTATCTCGAAAGGATTTAATCGTCATTTCACCCCAATTAGCTTAATTAGCTTTTATTATTATTTTTAACTAAATTACTAAAACACCCTTAATAATATCATTTAATGTTAAAAAAAATCTCAAATATTTTTTATATTAATTTTACACTAAAATATTTTTGAAACGTGGTACTAATAGTAAGAGTATTTTTTAAAAAAAAGTTTAGCAGTGGAGACACCGGTCCTAAAAGGGAGTGGATTGTGAAATCTCGGTTAGAGAGGGGAACAAAGCGTTCTCTTTATAAGGGTGTGAAACGTTCGCCTTAGAAGAAACCCAGAAGAAGATAGTATCAGCTAACGGTGGGGTTGGCTAATTACAAATATACCCTTGTTGGTGGAATTAAATTAGAGTGTATTAGTTATTTATGTAATTAAATTGAAATTAATTAATGGAATATTTGGAATGAATGGGGAATAGGATGGCAACGTGGTGTAGGAAATGCATCTACTTGAAGCCTAAATTGGAGAAACTTGCTGCTGATTATCTTACCAAGTAACATTTATTATTTATTTTTTTTTTTTTTACATTTCATTTATTTAATTATTTTAATTATTTACTAACTTTTCTCAGTAAAATTAAATATTTTTGCAGAGTAAAATTTTACTATGTGGATGTGAATAAGGTCCCTCAATCTCTGGTTAAACGTGGAAACATCTCTGTAAGTATTTTTATATATATATATATATATATTTTTTTACCTATCCTTCTCATTTTTTAAGTTATTAATTTATATATTTTCTTATTATGCAGAAAATGCCAACAATTCAGGTGATCTATTTTATTTTTTTAATTTTAGATTATTGATGTCATTTCAATCTTAAAATCATTTAATGAAAAATCAGCTTCGGGTGTTGGTTTTATGTTCTTAAAATCGTTTGAATGTGTTTTTCGATGAAACTCTCGGGTTAAAAGCTTTTCAAGAAGTGCTTTCTCGTGAAACATTCTCTGCATATTTGACTCCGGTGGAGTAGTTCCTTATCATTTTCAAGTCTTGTTGAGTACCCCGAAACGTCATTTGGCATTTTGGGTCGAGAGAGGGACAAATAAGGTGTTCGAAATTTTTGCAAAATTATTATTATTTTTTTTTAGCTTTGGAAGGATGGAGAAATGAAAGCGGAAGTGATTGGAGGGCATAAAGCTTGGCTTGTGATCGAAGAAGTTAGAGAAATGATTCATAAGTTTATTTTATAATCGAGTTCGAGTTCCACACGAGAAGCACGTTCCTCATTTTGTTCGGTTGTTCAGTCTCTAGGCAATGGTTCTTAAGACTTCATTATTTTTCGTTTACATGTTTTTATCTTCTGAAAATTTAATGTACATATATTATAAAAAAAAATATCAATGTCGATGAAAATGTTGTATGCAAATATAAGCTAATTTCAAGTTCATCC

mRNA sequence

CTTCACATTATTTCAATTTATAATACTAAGAAATAGTCAGAAAAATTAATTTGATTGGATGGATATGCCATCCCTTCCTCCCACGTGTGGCCCCCAACTCTCACCTTATGGATAAGCCAAGCCCTTCCCAAAACGCTCCCATTTCAATCCCAAACCCCAAAAAACCTCAAAAAAGTAAAAGAAAAAACCCCTCTTCACAGATCGAAGCCATGACCTCCTAGAGAACAAGAGGAAGAGAGGATCTACAGATATGTCTGTGTTGGCTGCGACCACTGCTCAGATTCTGTACAGCGAAGCTCATCATAATCAACACCAAATTCCGAGCAATGGGGGGAGGCGGTGTTTTGTGAACAGAGATTTTGGGTCTGTTTTATTTGGTCGGAGAAATGGAGAGCGGCGGAGGTTGCGGCGGAGGGAGTTGAAAATGGGGCCGGAAGCTGGGTTTTGGCCGGATCTGTCCCGGCCGGCGATGGTGGAGATGGAGTCCATCGAGGATTCCGAGCAGCTTGATCGGATTTTGGCTCACGCCCAGGAACTGTCTCAGCCGGTTCTTATCGACTGGATGGCAACGTGGTGTAGGAAATGCATCTACTTGAAGCCTAAATTGGAGAAACTTGCTGCTGATTATCTTACCAAAGTAAAATTTTACTATGTGGATGTGAATAAGGTCCCTCAATCTCTGGTTAAACGTGGAAACATCTCTATTATTGATGTCATTTCAATCTTAAAATCATTTAATGAAAAATCAGCTTCGGGTCTTTGGAAGGATGGAGAAATGAAAGCGGAAGTGATTGGAGGGCATAAAGCTTGGCTTGTGATCGAAGAAGTTAGAGAAATGATTCATAAGTTTATTTTATAATCGAGTTCGAGTTCCACACGAGAAGCACGTTCCTCATTTTGTTCGGTTGTTCAGTCTCTAGGCAATGGTTCTTAAGACTTCATTATTTTTCGTTTACATGTTTTTATCTTCTGAAAATTTAATGTACATATATTATAAAAAAAAATATCAATGTCGATGAAAATGTTGTATGCAAATATAAGCTAATTTCAAGTTCATCC

Coding sequence (CDS)

ATGTCTGTGTTGGCTGCGACCACTGCTCAGATTCTGTACAGCGAAGCTCATCATAATCAACACCAAATTCCGAGCAATGGGGGGAGGCGGTGTTTTGTGAACAGAGATTTTGGGTCTGTTTTATTTGGTCGGAGAAATGGAGAGCGGCGGAGGTTGCGGCGGAGGGAGTTGAAAATGGGGCCGGAAGCTGGGTTTTGGCCGGATCTGTCCCGGCCGGCGATGGTGGAGATGGAGTCCATCGAGGATTCCGAGCAGCTTGATCGGATTTTGGCTCACGCCCAGGAACTGTCTCAGCCGGTTCTTATCGACTGGATGGCAACGTGGTGTAGGAAATGCATCTACTTGAAGCCTAAATTGGAGAAACTTGCTGCTGATTATCTTACCAAAGTAAAATTTTACTATGTGGATGTGAATAAGGTCCCTCAATCTCTGGTTAAACGTGGAAACATCTCTATTATTGATGTCATTTCAATCTTAAAATCATTTAATGAAAAATCAGCTTCGGGTCTTTGGAAGGATGGAGAAATGAAAGCGGAAGTGATTGGAGGGCATAAAGCTTGGCTTGTGATCGAAGAAGTTAGAGAAATGATTCATAAGTTTATTTTATAA

Homology

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BLAST of CmoCh07G013040.1 vs. Swiss-Prot
Match: TRL31_ARATH (Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3)

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-44
Identity = 99/203 (48.77%), Postives = 134/203 (66.01%), Query Frame = 1


Query: 6   ATTAQILYSEAHHNQHQI-----PSNGGRRC-FVNRDFGSVLFGRRNGERR-RLRRRELK 65
           A+  Q+L  +AH N+ +        N  ++C F    + +   GR + E+  RL+     
Sbjct: 30  ASNPQMLTRQAHGNKKEQLWRKESLNLEKKCGFCVSVYSNEKLGRSHMEKEWRLK----- 89

Query: 66  MGPEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLKPK 125
                 FW ++++P  +EME I + E+LD +L+HA++LSQP++I+WMA+WCRKCIYLKPK
Sbjct: 90  -----AFWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPK 149

Query: 126 LEKLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWKDGEMKA 185
           LEKLAA+Y  + KFYYVDVNKVPQ+LVKRGNIS +  I             LWK+ EMK 
Sbjct: 150 LEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISKMPTIQ------------LWKEDEMKE 209

Query: 186 EVIGGHKAWLVIEEVREMIHKFI 202
           EVIGGHK WLVIEEVRE+I+KF+
Sbjct: 210 EVIGGHKGWLVIEEVRELINKFV 210

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BLAST of CmoCh07G013040.1 vs. Swiss-Prot
Match: TRL31_ORYSJ (Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774100 PE=3 SV=2)

HSP 1 Score: 157.9 bits (398), Expect = 1.2e-37
Identity = 86/157 (54.78%), Postives = 109/157 (69.43%), Query Frame = 1


Query: 43  GRRNGERRRLRRRELKMGPEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLI 102
           G   G+ RR  R +  +  EA FW D+S+P  VEME I+  E+LD  L  + E  QP++I
Sbjct: 51  GGGGGKGRRRERGDGMLRAEAYFW-DVSKP--VEMEEIDSMEKLDDALRWSVENKQPIII 110

Query: 103 DWMATWCRKCIYLKPKLEKLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSF 162
           DWMA+WCRKCIYLKP+LEK+A ++   V+FY+VDVNKVPQ++VKRGNI+ +  I      
Sbjct: 111 DWMASWCRKCIYLKPRLEKIAGEF-PGVRFYFVDVNKVPQTVVKRGNITKMPTIQ----- 170

Query: 163 NEKSASGLWKDGEMKAEVIGGHKAWLVIEEVREMIHK 200
                  LWKDGE  AEVIGGHKAWLV++EVREMI K
Sbjct: 171 -------LWKDGEWAAEVIGGHKAWLVMDEVREMIQK 191

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BLAST of CmoCh07G013040.1 vs. Swiss-Prot
Match: TRL32_ARATH (Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.3e-28
Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 1


Query: 72  PAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLKPKLEKLAADYLTKVK 131
           P  VE+  I      D+++  AQ+L + V+I WMA WCRKCIYLKPKLEKLAA++  +++
Sbjct: 73  PVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLR 132

Query: 132 FYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWKDGEMKAEVIGGHKAWLVIE 191
           FY+VDVN VP  LV R  ++ +  I             LW+DG+ +AEVIGGHKA  V+ 
Sbjct: 133 FYHVDVNAVPYRLVSRAGVTKMPTIQ------------LWRDGQKQAEVIGGHKAHFVVN 186

Query: 192 EVREMI 198
           EVREMI
Sbjct: 193 EVREMI 186

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BLAST of CmoCh07G013040.1 vs. Swiss-Prot
Match: TRXM4_ARATH (Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.1e-06
Identity = 40/150 (26.67%), Postives = 71/150 (47.33%), Query Frame = 1


Query: 53  RRRELKMGPEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKC 112
           RR  +  G         +  A VE+ ++ DSE   ++L    E   PVL+++ A WC  C
Sbjct: 64  RRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVL----ESDVPVLVEFWAPWCGPC 123

Query: 113 IYLKPKLEKLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWK 172
             + P +++LA D+  K KFY ++ ++ P +  + G  S+  VI             ++K
Sbjct: 124 RMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVI-------------IFK 183

Query: 173 DGEMKAEVIGGHKAWLVIEEVREMIHKFIL 203
            GE K  +IG     +  E + + I +F++
Sbjct: 184 GGEKKDSIIGA----VPRETLEKTIERFLV 192

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BLAST of CmoCh07G013040.1 vs. Swiss-Prot
Match: TRXM_PEA (Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06
Identity = 36/128 (28.12%), Postives = 63/128 (49.22%), Query Frame = 1


Query: 70  SRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLKPKLEKLAADYLTK 129
           +R A+ E++ + DS   + ++        PVL+D+ A WC  C  + P +++LA +Y  K
Sbjct: 62  AREAVNEVQVVNDSSWDELVIGS----ETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGK 121

Query: 130 VKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWKDGEMKAEVIGGHKAWLV 189
           +K Y ++ ++ P +  K G  SI  V+              +K+GE K  VIG      +
Sbjct: 122 IKCYKLNTDESPNTATKYGIRSIPTVL-------------FFKNGERKDSVIGAVPKATL 172

Query: 190 IEEVREMI 198
            E+V + I
Sbjct: 182 SEKVEKYI 172

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BLAST of CmoCh07G013040.1 vs. TrEMBL
Match: A0A0A0KZ53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496780 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 5.9e-65
Identity = 136/200 (68.00%), Postives = 148/200 (74.00%), Query Frame = 1


Query: 1   MSVLAATTAQILYSEAHHNQHQIPSNGGRRCFVNRDFGSVLFGRRNGERRRLRRRELKMG 60
           MSVL A+T+ ILY   H  QH   +N  R  F++ DFG              RRREL++ 
Sbjct: 1   MSVLGASTSHILYPPLH--QHHFLTNAKRCSFLSTDFGDH------------RRRELRIK 60

Query: 61  PEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLKPKLE 120
            EAGFWPDLSRPA VEMESI+DS+QLDRIL HAQ LSQP+LIDWMATWCRKCIYLKPKLE
Sbjct: 61  AEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLE 120

Query: 121 KLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWKDGEMKAEV 180
           KLAADY+TK KFYYVDVNKVPQSLVKRGNIS +  I             LWKDGEMKAEV
Sbjct: 121 KLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQ------------LWKDGEMKAEV 174

Query: 181 IGGHKAWLVIEEVREMIHKF 201
           IGGHKAWLVIEEVREMI KF
Sbjct: 181 IGGHKAWLVIEEVREMIQKF 174

[Close]

BLAST of CmoCh07G013040.1 vs. TrEMBL
Match: M1ATA3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011420 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.6e-54
Identity = 121/203 (59.61%), Postives = 148/203 (72.91%), Query Frame = 1


Query: 1   MSVLAATTAQILYSEAHH--NQHQIPSNGGRRCFVNRDFGSVLFGRRNGERRRLRRRELK 60
           MS+LA  + QILY E ++  NQH + ++GG    V + +G     +R G+ ++  +RE++
Sbjct: 29  MSILAPNS-QILYREIYNRENQHLVLNSGGNLNIV-KSYGFCFVDKRRGDWKKKIKREIR 88

Query: 61  MGPEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLKPK 120
           +      W DLSRPA VEM+ IE SEQLD+IL  A+ELSQP++IDWMATWCRKCIYLKPK
Sbjct: 89  IHAS---WADLSRPAAVEMQPIESSEQLDQILDSAKELSQPIIIDWMATWCRKCIYLKPK 148

Query: 121 LEKLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWKDGEMKA 180
           LEKLAA++ TK+KFYYVDVNKVPQ+LVKRGNIS +  I             LWKDGEMKA
Sbjct: 149 LEKLAAEFDTKLKFYYVDVNKVPQTLVKRGNISKMPTIQ------------LWKDGEMKA 208

Query: 181 EVIGGHKAWLVIEEVREMIHKFI 202
           EVIGGHKAWLVIEEVREMI  FI
Sbjct: 209 EVIGGHKAWLVIEEVREMIKNFI 214

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BLAST of CmoCh07G013040.1 vs. TrEMBL
Match: W9SW93_9ROSA (Thioredoxin-like 3-1 OS=Morus notabilis GN=L484_028031 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.7e-54
Identity = 118/205 (57.56%), Postives = 141/205 (68.78%), Query Frame = 1


Query: 1   MSVLAATTAQILYSEAHHNQH----QIPSNGGRRCFVNRDFGSVLFGRRNGERRRLRRRE 60
           MSVLAA++ QIL+ E HH  H    Q+ ++ G   F     G      RN E ++  +R+
Sbjct: 1   MSVLAASS-QILWREFHHRDHHHHQQLCASSGNYSFFAGKSGGFWGDFRNREDKKTSKRD 60

Query: 61  LKMGPEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLK 120
           ++      FWPDLS+PA VEME I D + LDRIL+HAQE+SQP+LIDWMA+WCRKCIYLK
Sbjct: 61  MRA---EAFWPDLSKPASVEMEPINDCDHLDRILSHAQEISQPILIDWMASWCRKCIYLK 120

Query: 121 PKLEKLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWKDGEM 180
           PKLEKLAADY TK+KFY VDVNKVPQ LVKRGNI+I                  WKDGEM
Sbjct: 121 PKLEKLAADYDTKIKFYCVDVNKVPQDLVKRGNITI------------------WKDGEM 180

Query: 181 KAEVIGGHKAWLVIEEVREMIHKFI 202
           KAEVIGGHKAW+VI EV EM+ KF+
Sbjct: 181 KAEVIGGHKAWIVINEVTEMVKKFV 183

[Close]

BLAST of CmoCh07G013040.1 vs. TrEMBL
Match: A0A067JKZ0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25562 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.7e-54
Identity = 122/209 (58.37%), Postives = 149/209 (71.29%), Query Frame = 1


Query: 1   MSVLAATTAQILYSEAHHN----QHQIPSNGGRRC----FVNRDFGSVLFGRRNGERRRL 60
           MS++AA +  ILY EA +N    Q Q+ S+ G  C     V R  G   F  RNG+ + +
Sbjct: 1   MSIIAANS-HILYREAVYNYQQQQLQLRSSSGGSCCSSFLVQRTCG--FFDLRNGKPKGI 60

Query: 61  RRRELKMGPEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKC 120
            +R++K+     FW D++ P  VEME+I DS+QLD+IL  AQ+LSQP+LIDWMA+WCRKC
Sbjct: 61  SKRDMKL---EAFWADMTEPTSVEMEAINDSDQLDQILIQAQQLSQPILIDWMASWCRKC 120

Query: 121 IYLKPKLEKLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWK 180
           IYLKPKL+KLAA++ TK+KFYYVDVNKVPQ+LVKRGNIS +  I             LWK
Sbjct: 121 IYLKPKLKKLAAEFDTKIKFYYVDVNKVPQALVKRGNISKMPTIQ------------LWK 180

Query: 181 DGEMKAEVIGGHKAWLVIEEVREMIHKFI 202
           DGEMKAEVIGGHKAWLVIEEVREMI KFI
Sbjct: 181 DGEMKAEVIGGHKAWLVIEEVREMIQKFI 191

[Close]

BLAST of CmoCh07G013040.1 vs. TrEMBL
Match: K4D2D3_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 8.0e-54
Identity = 122/203 (60.10%), Postives = 146/203 (71.92%), Query Frame = 1


Query: 1   MSVLAATTAQILYSEAHH--NQHQIPSNGGRRCFVNRDFGSVLFGRRNGERRRLRRRELK 60
           MS+LA  + QILY E ++  NQH   ++GG    V + +G     +R G+ ++  +REL+
Sbjct: 1   MSILAPNS-QILYREIYNRENQHLFLNSGGNVNIV-KSYGFCFVDKRRGDWKKKMKRELR 60

Query: 61  MGPEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLKPK 120
           +      WPDLSRPA VEM+ IE SEQLD+IL  A+ELSQPV+IDWMA WCRKCIYLKPK
Sbjct: 61  IHAS---WPDLSRPAAVEMQPIESSEQLDQILDSAKELSQPVIIDWMAAWCRKCIYLKPK 120

Query: 121 LEKLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWKDGEMKA 180
           LEKLAA++ TKVKFYYVDVNKVPQ+LVKRGNIS +  I             LWK GEMKA
Sbjct: 121 LEKLAAEFDTKVKFYYVDVNKVPQTLVKRGNISKMPTIQ------------LWKYGEMKA 180

Query: 181 EVIGGHKAWLVIEEVREMIHKFI 202
           EVIGGHKAWLVIEEVREMI  F+
Sbjct: 181 EVIGGHKAWLVIEEVREMIKNFV 186

[Close]

BLAST of CmoCh07G013040.1 vs. TAIR10
Match: AT5G06690.2 (AT5G06690.2 WCRKC thioredoxin 1)

HSP 1 Score: 138.7 bits (348), Expect = 4.1e-33
Identity = 76/166 (45.78%), Postives = 110/166 (66.27%), Query Frame = 1


Query: 6   ATTAQILYSEAHHNQHQI-----PSNGGRRC-FVNRDFGSVLFGRRNGERR-RLRRRELK 65
           A+  Q+L  +AH N+ +        N  ++C F    + +   GR + E+  RL+     
Sbjct: 30  ASNPQMLTRQAHGNKKEQLWRKESLNLEKKCGFCVSVYSNEKLGRSHMEKEWRLK----- 89

Query: 66  MGPEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLKPK 125
                 FW ++++P  +EME I + E+LD +L+HA++LSQP++I+WMA+WCRKCIYLKPK
Sbjct: 90  -----AFWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPK 149

Query: 126 LEKLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNE 165
           LEKLAA+Y  + KFYYVDVNKVPQ+LVKRGNIS+  +  IL  F++
Sbjct: 150 LEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISVKCLNIILSFFSD 185

[Close]

BLAST of CmoCh07G013040.1 vs. TAIR10
Match: AT5G04260.1 (AT5G04260.1 WCRKC thioredoxin 2)

HSP 1 Score: 125.2 bits (313), Expect = 4.7e-29
Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 1


Query: 72  PAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLKPKLEKLAADYLTKVK 131
           P  VE+  I      D+++  AQ+L + V+I WMA WCRKCIYLKPKLEKLAA++  +++
Sbjct: 73  PVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLR 132

Query: 132 FYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWKDGEMKAEVIGGHKAWLVIE 191
           FY+VDVN VP  LV R  ++ +  I             LW+DG+ +AEVIGGHKA  V+ 
Sbjct: 133 FYHVDVNAVPYRLVSRAGVTKMPTIQ------------LWRDGQKQAEVIGGHKAHFVVN 186

Query: 192 EVREMI 198
           EVREMI
Sbjct: 193 EVREMI 186

[Close]

BLAST of CmoCh07G013040.1 vs. TAIR10
Match: AT3G15360.1 (AT3G15360.1 thioredoxin M-type 4)

HSP 1 Score: 55.1 bits (131), Expect = 5.9e-08
Identity = 40/150 (26.67%), Postives = 71/150 (47.33%), Query Frame = 1


Query: 53  RRRELKMGPEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKC 112
           RR  +  G         +  A VE+ ++ DSE   ++L    E   PVL+++ A WC  C
Sbjct: 64  RRTRIARGGRIACEAQDTTAAAVEVPNLSDSEWQTKVL----ESDVPVLVEFWAPWCGPC 123

Query: 113 IYLKPKLEKLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWK 172
             + P +++LA D+  K KFY ++ ++ P +  + G  S+  VI             ++K
Sbjct: 124 RMIHPIVDQLAKDFAGKFKFYKINTDESPNTANRYGIRSVPTVI-------------IFK 183

Query: 173 DGEMKAEVIGGHKAWLVIEEVREMIHKFIL 203
            GE K  +IG     +  E + + I +F++
Sbjct: 184 GGEKKDSIIGA----VPRETLEKTIERFLV 192

[Close]

BLAST of CmoCh07G013040.1 vs. NCBI nr
Match: gi|659083001|ref|XP_008442136.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis melo])

HSP 1 Score: 262.3 bits (669), Expect = 6.9e-67
Identity = 139/200 (69.50%), Postives = 153/200 (76.50%), Query Frame = 1


Query: 1   MSVLAATTAQILYSEAHHNQHQIPSNGGRRCFVNRDFGSVLFGRRNGERRRLRRRELKMG 60
           M VL A+++ ILY++ H  QHQ  SNG R  F+N DFG              RRREL++ 
Sbjct: 1   MYVLGASSSHILYAQLH--QHQFLSNGKRCGFLNTDFGDH------------RRRELRIK 60

Query: 61  PEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLKPKLE 120
            EAGFWPDLSRPA VEMESI+DS+QLDRIL HAQ+LSQP+LIDWMATWCRKCIYLKPKLE
Sbjct: 61  AEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQQLSQPILIDWMATWCRKCIYLKPKLE 120

Query: 121 KLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWKDGEMKAEV 180
           KLAADY+TKVKFYYVDVNKVPQSLVKRGNIS +  I             LWKDGEMKAEV
Sbjct: 121 KLAADYVTKVKFYYVDVNKVPQSLVKRGNISKMPTIQ------------LWKDGEMKAEV 174

Query: 181 IGGHKAWLVIEEVREMIHKF 201
           IGGHKAWLVIEEVREMI KF
Sbjct: 181 IGGHKAWLVIEEVREMIQKF 174

[Close]

BLAST of CmoCh07G013040.1 vs. NCBI nr
Match: gi|700199630|gb|KGN54788.1| (hypothetical protein Csa_4G496780 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 8.5e-65
Identity = 136/200 (68.00%), Postives = 148/200 (74.00%), Query Frame = 1


Query: 1   MSVLAATTAQILYSEAHHNQHQIPSNGGRRCFVNRDFGSVLFGRRNGERRRLRRRELKMG 60
           MSVL A+T+ ILY   H  QH   +N  R  F++ DFG              RRREL++ 
Sbjct: 1   MSVLGASTSHILYPPLH--QHHFLTNAKRCSFLSTDFGDH------------RRRELRIK 60

Query: 61  PEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLKPKLE 120
            EAGFWPDLSRPA VEMESI+DS+QLDRIL HAQ LSQP+LIDWMATWCRKCIYLKPKLE
Sbjct: 61  AEAGFWPDLSRPASVEMESIDDSDQLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLE 120

Query: 121 KLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWKDGEMKAEV 180
           KLAADY+TK KFYYVDVNKVPQSLVKRGNIS +  I             LWKDGEMKAEV
Sbjct: 121 KLAADYVTKAKFYYVDVNKVPQSLVKRGNISKMPTIQ------------LWKDGEMKAEV 174

Query: 181 IGGHKAWLVIEEVREMIHKF 201
           IGGHKAWLVIEEVREMI KF
Sbjct: 181 IGGHKAWLVIEEVREMIQKF 174

[Close]

BLAST of CmoCh07G013040.1 vs. NCBI nr
Match: gi|778694930|ref|XP_004146393.2| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis sativus])

HSP 1 Score: 238.0 bits (606), Expect = 1.4e-59
Identity = 124/176 (70.45%), Postives = 134/176 (76.14%), Query Frame = 1


Query: 25  SNGGRRCFVNRDFGSVLFGRRNGERRRLRRRELKMGPEAGFWPDLSRPAMVEMESIEDSE 84
           +N  R  F++ DFG              RRREL++  EAGFWPDLSRPA VEMESI+DS+
Sbjct: 43  TNAKRCSFLSTDFGDH------------RRRELRIKAEAGFWPDLSRPASVEMESIDDSD 102

Query: 85  QLDRILAHAQELSQPVLIDWMATWCRKCIYLKPKLEKLAADYLTKVKFYYVDVNKVPQSL 144
           QLDRIL HAQ LSQP+LIDWMATWCRKCIYLKPKLEKLAADY+TK KFYYVDVNKVPQSL
Sbjct: 103 QLDRILIHAQHLSQPILIDWMATWCRKCIYLKPKLEKLAADYVTKAKFYYVDVNKVPQSL 162

Query: 145 VKRGNISIIDVISILKSFNEKSASGLWKDGEMKAEVIGGHKAWLVIEEVREMIHKF 201
           VKRGNIS +  I             LWKDGEMKAEVIGGHKAWLVIEEVREMI KF
Sbjct: 163 VKRGNISKMPTIQ------------LWKDGEMKAEVIGGHKAWLVIEEVREMIQKF 194

[Close]

BLAST of CmoCh07G013040.1 vs. NCBI nr
Match: gi|970058149|ref|XP_015055761.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Solanum pennellii])

HSP 1 Score: 220.3 bits (560), Expect = 3.0e-54
Identity = 122/203 (60.10%), Postives = 147/203 (72.41%), Query Frame = 1


Query: 1   MSVLAATTAQILYSEAHH--NQHQIPSNGGRRCFVNRDFGSVLFGRRNGERRRLRRRELK 60
           MS+LA  + QILY E ++  NQH   ++GG    V + +G     +R G+ ++  +REL+
Sbjct: 1   MSILAPIS-QILYREIYNRENQHLFLNSGGNVNIV-KSYGFCFVDKRRGDWKKKIKRELR 60

Query: 61  MGPEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWMATWCRKCIYLKPK 120
           +      WPDLSRPA VEM+ IE SEQLD+IL  A+ELSQP++IDWMA WCRKCIYLKPK
Sbjct: 61  IHAS---WPDLSRPAAVEMQPIESSEQLDQILDSAKELSQPIIIDWMAAWCRKCIYLKPK 120

Query: 121 LEKLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEKSASGLWKDGEMKA 180
           LEKLAA++ TKVKFYYVDVNKVPQ+LVKRGNIS +  I             LWKDGEMKA
Sbjct: 121 LEKLAAEFDTKVKFYYVDVNKVPQTLVKRGNISKMPTIQ------------LWKDGEMKA 180

Query: 181 EVIGGHKAWLVIEEVREMIHKFI 202
           EVIGGHKAWLVIEEVREMI  F+
Sbjct: 181 EVIGGHKAWLVIEEVREMIKNFV 186

[Close]

BLAST of CmoCh07G013040.1 vs. NCBI nr
Match: gi|1012185877|ref|XP_015969425.1| (PREDICTED: thioredoxin-like 3-1, chloroplastic [Arachis duranensis])

HSP 1 Score: 219.9 bits (559), Expect = 3.9e-54
Identity = 123/216 (56.94%), Postives = 146/216 (67.59%), Query Frame = 1


Query: 1   MSVLAATTAQILYSEA--------HHNQHQ--IPSNGGRRCFVNR-----DFGSVLFGRR 60
           MS        ILY E         H +QHQ  + S+ GR  F++        G+  FG+R
Sbjct: 1   MSATGLLYPHILYGEVVVYQRDQQHQHQHQCLVSSSSGRYVFLSSLKSSGGCGNASFGQR 60

Query: 61  NGERRRLRRRELKMGPEAGFWPDLSRPAMVEMESIEDSEQLDRILAHAQELSQPVLIDWM 120
                 +RRR L++      WPDLSRP+++EMESI+DSE LD+IL HAQ+ SQP++IDWM
Sbjct: 61  ------IRRRNLRV---EATWPDLSRPSVIEMESIDDSEHLDQILLHAQQNSQPIIIDWM 120

Query: 121 ATWCRKCIYLKPKLEKLAADYLTKVKFYYVDVNKVPQSLVKRGNISIIDVISILKSFNEK 180
           A WCRKCIYLKPKLEKLAA+Y TK+KFYYVDVNKVPQ+LVKRGNIS +  I         
Sbjct: 121 AAWCRKCIYLKPKLEKLAAEYDTKIKFYYVDVNKVPQTLVKRGNISKMPTIQ-------- 180

Query: 181 SASGLWKDGEMKAEVIGGHKAWLVIEEVREMIHKFI 202
               LWKDGEMKAEVIGGHKAWLVIEEVREMI KF+
Sbjct: 181 ----LWKDGEMKAEVIGGHKAWLVIEEVREMILKFV 195

The following BLAST results are available for this feature:

BLAST of CmoCh07G013040.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRL31_ARATH	1.3e-44	48.77	Thioredoxin-like 3-1, chloroplastic OS=Arabidopsis thaliana GN=WCRKC1 PE=2 SV=3	[more]
TRL31_ORYSJ	1.2e-37	54.78	Thioredoxin-like 3-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os02g0774...	[more]
TRL32_ARATH	8.3e-28	49.21	Thioredoxin-like 3-2, chloroplastic OS=Arabidopsis thaliana GN=WCRKC2 PE=2 SV=1	[more]
TRXM4_ARATH	1.1e-06	26.67	Thioredoxin M4, chloroplastic OS=Arabidopsis thaliana GN=At3g15360 PE=2 SV=2	[more]
TRXM_PEA	1.8e-06	28.13	Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1	[more]

BLAST of CmoCh07G013040.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZ53_CUCSA	5.9e-65	68.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G496780 PE=4 SV=1	[more]
M1ATA3_SOLTU	3.6e-54	59.61	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400011420 PE=4 SV=1	[more]
W9SW93_9ROSA	4.7e-54	57.56	Thioredoxin-like 3-1 OS=Morus notabilis GN=L484_028031 PE=4 SV=1	[more]
A0A067JKZ0_JATCU	4.7e-54	58.37	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25562 PE=4 SV=1	[more]
K4D2D3_SOLLC	8.0e-54	60.10	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of CmoCh07G013040.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G06690.2	4.1e-33	45.78	WCRKC thioredoxin 1	[more]
AT5G04260.1	4.7e-29	49.21	WCRKC thioredoxin 2	[more]
AT3G15360.1	5.9e-08	26.67	thioredoxin M-type 4	[more]

BLAST of CmoCh07G013040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659083001\|ref\|XP_008442136.1\|	6.9e-67	69.50	PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis melo]	[more]
gi\|700199630\|gb\|KGN54788.1\|	8.5e-65	68.00	hypothetical protein Csa_4G496780 [Cucumis sativus]	[more]
gi\|778694930\|ref\|XP_004146393.2\|	1.4e-59	70.45	PREDICTED: thioredoxin-like 3-1, chloroplastic [Cucumis sativus]	[more]
gi\|970058149\|ref\|XP_015055761.1\|	3.0e-54	60.10	PREDICTED: thioredoxin-like 3-1, chloroplastic [Solanum pennellii]	[more]
gi\|1012185877\|ref\|XP_015969425.1\|	3.9e-54	56.94	PREDICTED: thioredoxin-like 3-1, chloroplastic [Arachis duranensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005746	Thioredoxin
IPR012336	Thioredoxin-like_fold
IPR013766	Thioredoxin_domain

Vocabulary: **Biological Process**
Term	Definition
GO:0006662	glycerol ether metabolic process
GO:0045454	cell redox homeostasis

Vocabulary: **Molecular Function**
Term	Definition
GO:0015035	protein disulfide oxidoreductase activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005623	cell
molecular_function	GO:0015035	protein disulfide oxidoreductase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh07G013040	CmoCh07G013040	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh07G013040.1	CmoCh07G013040.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G013040.1.three_prime_UTR.1	CmoCh07G013040.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G013040.1.CDS.5	CmoCh07G013040.1.CDS.5	CDS
CmoCh07G013040.1.CDS.4	CmoCh07G013040.1.CDS.4	CDS
CmoCh07G013040.1.CDS.3	CmoCh07G013040.1.CDS.3	CDS
CmoCh07G013040.1.CDS.2	CmoCh07G013040.1.CDS.2	CDS
CmoCh07G013040.1.CDS.1	CmoCh07G013040.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G013040.1.five_prime_UTR.1	CmoCh07G013040.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G013040.1.exon.5	CmoCh07G013040.1.exon.5	exon
CmoCh07G013040.1.exon.4	CmoCh07G013040.1.exon.4	exon
CmoCh07G013040.1.exon.3	CmoCh07G013040.1.exon.3	exon
CmoCh07G013040.1.exon.2	CmoCh07G013040.1.exon.2	exon
CmoCh07G013040.1.exon.1	CmoCh07G013040.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005746	Thioredoxin	PANTHER	PTHR10438	THIOREDOXIN	coord: 3..201 score: 1.6
IPR012336	Thioredoxin-like fold	GENE3D	G3DSA:3.40.30.10		coord: 75..159 score: 8.2
IPR012336	Thioredoxin-like fold	unknown	SSF52833	Thioredoxin-like	coord: 76..193 score: 2.66
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 95..163 score: 1.2
IPR013766	Thioredoxin domain	PROFILE	PS51352	THIOREDOXIN_2	coord: 54..202 score: 8
None	No IPR available	PANTHER	PTHR10438:SF283	THIOREDOXIN-LIKE 3-1, CHLOROPLASTIC	coord: 3..201 score: 1.6