CmoCh07G002600.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G002600.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Glycine-rich family protein
Location	Cmo_Chr07 : 1276893 .. 1277288 (-)
Sequence length	396

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCTCCACTCTTCTCGTCGCCGTCCTCCTTCTCTCGCCGGCCTTCTCTCTCGCCACCGCTCGGAACAGCGGAGGCGGCGGCTTCGATGGGATGTTCGGACCTGGTAATGGATTTGACGACATACCCGGCTTTGGAAAGGGCTGGGATAAGGGCATCATCGGTGGAGGATATGGCGGTGGCTACGGCGGCCCCAAAGGTGGATACGGGAAGGGCGGGATCATAAGGAACACTGTCGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCTAAGTGTTTCTCCTCCTACAGCCGATCGGGGAAGGGCTTCGGCGGCGGAGGCGGAGGCGGTGGCTGCACCATCGACTGCACTAAGAAATGTATCGGCTATTGTTAG

mRNA sequence

ATGGCTATCTCCACTCTTCTCGTCGCCGTCCTCCTTCTCTCGCCGGCCTTCTCTCTCGCCACCGCTCGGAACAGCGGAGGCGGCGGCTTCGATGGGATGTTCGGACCTGGTAATGGATTTGACGACATACCCGGCTTTGGAAAGGGCTGGGATAAGGGCATCATCGGTGGAGGATATGGCGGTGGCTACGGCGGCCCCAAAGGTGGATACGGGAAGGGCGGGATCATAAGGAACACTGTCGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCTAAGTGTTTCTCCTCCTACAGCCGATCGGGGAAGGGCTTCGGCGGCGGAGGCGGAGGCGGTGGCTGCACCATCGACTGCACTAAGAAATGTATCGGCTATTGTTAG

Coding sequence (CDS)

ATGGCTATCTCCACTCTTCTCGTCGCCGTCCTCCTTCTCTCGCCGGCCTTCTCTCTCGCCACCGCTCGGAACAGCGGAGGCGGCGGCTTCGATGGGATGTTCGGACCTGGTAATGGATTTGACGACATACCCGGCTTTGGAAAGGGCTGGGATAAGGGCATCATCGGTGGAGGATATGGCGGTGGCTACGGCGGCCCCAAAGGTGGATACGGGAAGGGCGGGATCATAAGGAACACTGTCGTGTGTAAAGAGAAAGGTCCTTGTTACAATAAGAAGGTGACTTGTCCGGCTAAGTGTTTCTCCTCCTACAGCCGATCGGGGAAGGGCTTCGGCGGCGGAGGCGGAGGCGGTGGCTGCACCATCGACTGCACTAAGAAATGTATCGGCTATTGTTAG

Homology

[Close]

BLAST of CmoCh07G002600.1 vs. TrEMBL
Match: A0A0A0KHJ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516980 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.0e-57
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 1


Query: 3   ISTLLVAVLLLSPAFSLATARNSGGGGFDGMFGPGNGFDDIPGFGKGWDKGIIGGGYGGG 62
           I   L+A+LLLSP+ SLATAR  GG  FDGMFGPGNGF DIPGFGKGWDKGIIGGGYGGG
Sbjct: 7   IFPFLIAILLLSPSISLATARKDGG--FDGMFGPGNGFGDIPGFGKGWDKGIIGGGYGGG 66

Query: 63  YGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTID 122
           YGGPKGGYGKGGIIRN+VVCK KGPCYNKKVTCPAKCFSSYSRSGKG+GGGGGGGGCTID
Sbjct: 67  YGGPKGGYGKGGIIRNSVVCKVKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTID 126

Query: 123 CTKKCIGYC 132
           CTKKCIGYC
Sbjct: 127 CTKKCIGYC 133

[Close]

BLAST of CmoCh07G002600.1 vs. TrEMBL
Match: A0A067JDR6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21379 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-39
Identity = 85/113 (75.22%), Postives = 90/113 (79.65%), Query Frame = 1


Query: 23  RNSGGG----GFDGMFGPGNGFDDIPGFGKGWDKGIIGGGYGGGYGGPKGGYGKGGIIRN 82
           R  GGG    G  G FGPG GF  IPGFGKGW  GI+GGGYG GYGGP GGY KGGIIR 
Sbjct: 41  RTRGGGNDNPGMGGYFGPGAGFG-IPGFGKGWGNGIVGGGYGAGYGGPNGGYSKGGIIRP 100

Query: 83  TVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCTKKCIGYC 132
           TVVCKE+GPCY KK+TCPAKCF+SYSRSGKG+G GGGGGGCTIDC KKC  YC
Sbjct: 101 TVVCKERGPCYKKKLTCPAKCFTSYSRSGKGYGAGGGGGGCTIDCKKKCTAYC 152

[Close]

BLAST of CmoCh07G002600.1 vs. TrEMBL
Match: C6SVW2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G244800 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.6e-39
Identity = 95/145 (65.52%), Postives = 105/145 (72.41%), Query Frame = 1


Query: 3   ISTLLVAVLLLSPAFSLATA-------------RNSGGG---GFDGMFGPGNGFDDIPGF 62
           I+ LL+++LLL  + SLAT               N GGG   G  G FGPG GF  IPGF
Sbjct: 25  ITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGGFFGPGGGFS-IPGF 84

Query: 63  GKGWDKGIIGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRS 122
           G G+  GIIGGGYG GYGGP GG  KGGIIR TVVCK+KGPC+ KKVTCPAKCFSS+SRS
Sbjct: 85  GNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVVCKDKGPCFQKKVTCPAKCFSSFSRS 144

Query: 123 GKGFGGGGGGGGCTIDCTKKCIGYC 132
           GKG+GGGGGGGGCTIDC KKCI YC
Sbjct: 145 GKGYGGGGGGGGCTIDCKKKCIAYC 168

[Close]

BLAST of CmoCh07G002600.1 vs. TrEMBL
Match: A0A0B2PLW1_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_014337 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.0e-39
Identity = 94/145 (64.83%), Postives = 105/145 (72.41%), Query Frame = 1


Query: 3   ISTLLVAVLLLSPAFSLATA-------------RNSGGG---GFDGMFGPGNGFDDIPGF 62
           I+ LL+++LLL  + SLAT               N GGG   G  G FGPG GF  IPGF
Sbjct: 25  ITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGGFFGPGGGFS-IPGF 84

Query: 63  GKGWDKGIIGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRS 122
           G G+  GIIGGGYG GYGGP GG  KGGIIR TV+CK+KGPC+ KKVTCPAKCFSS+SRS
Sbjct: 85  GNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVLCKDKGPCFQKKVTCPAKCFSSFSRS 144

Query: 123 GKGFGGGGGGGGCTIDCTKKCIGYC 132
           GKG+GGGGGGGGCTIDC KKCI YC
Sbjct: 145 GKGYGGGGGGGGCTIDCKKKCIAYC 168

[Close]

BLAST of CmoCh07G002600.1 vs. TrEMBL
Match: B9S5Z9_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1062760 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-38
Identity = 93/144 (64.58%), Postives = 104/144 (72.22%), Query Frame = 1


Query: 7   LVAVLLLSPAFSLATA--------------RNSGG-----GGFDGMFGPGNGFDDIPGFG 66
           L+A+LLLS +FS AT               +N GG     GG  G FGPG+GF  IPG+G
Sbjct: 9   LLAILLLSGSFSSATRPEPKPTKGKSTNNPKNKGGSGNDAGGMGGFFGPGSGFG-IPGYG 68

Query: 67  KGWDKGIIGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSG 126
            G    IIGGGYG G+GGP GGY KGGIIR TVVCKEKGPCY KK+TCPAKCF+SYSRSG
Sbjct: 69  NG----IIGGGYGAGFGGPNGGYSKGGIIRPTVVCKEKGPCYKKKLTCPAKCFTSYSRSG 128

Query: 127 KGFGGGGGGGGCTIDCTKKCIGYC 132
           KG+GGGGGGGGCT+DC KKCI YC
Sbjct: 129 KGYGGGGGGGGCTMDCKKKCIAYC 147

[Close]

BLAST of CmoCh07G002600.1 vs. TAIR10
Match: AT4G21620.1 (AT4G21620.1 glycine-rich protein)

HSP 1 Score: 150.2 bits (378), Expect = 8.8e-37
Identity = 77/125 (61.60%), Postives = 94/125 (75.20%), Query Frame = 1


Query: 7   LVAVLLLSPAFSLATARNSGGGGFDGMFGPGNGFDDIPGFGKGWDKGIIGGGYGGGYGGP 66
           L+ ++L+S   S      + G GF G+  PG+GF  IPGFG G+    +GGGYGGG+GGP
Sbjct: 11  LLIIILVSATESARQKSGNDGLGFGGV--PGSGF--IPGFGNGFPGTGVGGGYGGGFGGP 70

Query: 67  KGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCTKK 126
            GG+GKGG++R TV CKEKGPC  KK+ CPAKCF S+SRSGKG+GGGGGGGGCT+DC KK
Sbjct: 71  SGGFGKGGVVRPTVTCKEKGPCNGKKLRCPAKCFKSFSRSGKGYGGGGGGGGCTMDCKKK 130

Query: 127 CIGYC 132
           CI YC
Sbjct: 131 CIAYC 131

[Close]

BLAST of CmoCh07G002600.1 vs. TAIR10
Match: AT1G61255.1 (AT1G61255.1 BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.2))

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-18
Identity = 61/137 (44.53%), Postives = 76/137 (55.47%), Query Frame = 1


Query: 5   TLLVAVLLLSPAFSLATARNSGGGGFDGMFGPGNGFDDIPGFGKGWDKGII--------- 64
           T+L+  L LS +       +S  G +       +  +   G+G G   G+          
Sbjct: 10  TILLLTLTLSHSRPARPESSSSTGSYSDQLKKHSKDNYNKGYGSGGYPGLTTEPATGFIL 69

Query: 65  -GGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGG 124
            G G GG Y    GGY KG  +R TV+C+EKG CY KK+TCPAKCF S SR GKG+  GG
Sbjct: 70  PGSGPGGSYSELSGGYSKGRGVRLTVMCEEKGHCYMKKLTCPAKCFKSLSRKGKGY--GG 129

Query: 125 GGGGCTIDCTKKCIGYC 132
           GGGGCTIDC KKC+ YC
Sbjct: 130 GGGGCTIDC-KKCVAYC 143

[Close]

BLAST of CmoCh07G002600.1 vs. NCBI nr
Match: gi|449433888|ref|XP_004134728.1| (PREDICTED: ctenidin-3-like [Cucumis sativus])

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-57
Identity = 114/129 (88.37%), Postives = 119/129 (92.25%), Query Frame = 1


Query: 3   ISTLLVAVLLLSPAFSLATARNSGGGGFDGMFGPGNGFDDIPGFGKGWDKGIIGGGYGGG 62
           I   L+A+LLLSP+ SLATAR  GG  FDGMFGPGNGF DIPGFGKGWDKGIIGGGYGGG
Sbjct: 7   IFPFLIAILLLSPSISLATARKDGG--FDGMFGPGNGFGDIPGFGKGWDKGIIGGGYGGG 66

Query: 63  YGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTID 122
           YGGPKGGYGKGGIIRN+VVCK KGPCYNKKVTCPAKCFSSYSRSGKG+GGGGGGGGCTID
Sbjct: 67  YGGPKGGYGKGGIIRNSVVCKVKGPCYNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTID 126

Query: 123 CTKKCIGYC 132
           CTKKCIGYC
Sbjct: 127 CTKKCIGYC 133

[Close]

BLAST of CmoCh07G002600.1 vs. NCBI nr
Match: gi|659078783|ref|XP_008439905.1| (PREDICTED: RNA-binding protein cabeza-like [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 6.1e-56
Identity = 110/129 (85.27%), Postives = 117/129 (90.70%), Query Frame = 1


Query: 3   ISTLLVAVLLLSPAFSLATARNSGGGGFDGMFGPGNGFDDIPGFGKGWDKGIIGGGYGGG 62
           I   L+A+LLLSP+ SLAT+R  GG  F GMFGPGNGFDDIPGFGKGWDKGI+GGGYGGG
Sbjct: 7   IFPFLIAILLLSPSLSLATSRKDGG--FGGMFGPGNGFDDIPGFGKGWDKGIVGGGYGGG 66

Query: 63  YGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTID 122
           YGGPKGGYGKGGIIR  VVCKEKGPC+NKKVTCPAKCFSSYSRSGKG+GGGGGGGGCTID
Sbjct: 67  YGGPKGGYGKGGIIRKPVVCKEKGPCFNKKVTCPAKCFSSYSRSGKGYGGGGGGGGCTID 126

Query: 123 CTKKCIGYC 132
           C KKCIGYC
Sbjct: 127 CAKKCIGYC 133

[Close]

BLAST of CmoCh07G002600.1 vs. NCBI nr
Match: gi|1009108847|ref|XP_015887003.1| (PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 170.6 bits (431), Expect = 1.8e-39
Identity = 82/108 (75.93%), Postives = 91/108 (84.26%), Query Frame = 1


Query: 24  NSGGGGFDGMFGPGNGFDDIPGFGKGWDKGIIGGGYGGGYGGPKGGYGKGGIIRNTVVCK 83
           +  GGG  G+FGPG GF  IPGFGKG+  GIIGGGYG GYGGP GGY KGG+IR TVVCK
Sbjct: 54  DDAGGGAPGVFGPGGGFG-IPGFGKGFGSGIIGGGYGSGYGGPNGGYSKGGVIRPTVVCK 113

Query: 84  EKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCTKKCIGYC 132
           EKGPCY KK+TCPAKCF+SYSRSGKG+G GGGGGGCT+DC KKC+ YC
Sbjct: 114 EKGPCYQKKLTCPAKCFTSYSRSGKGYGSGGGGGGCTMDCKKKCVAYC 160

[Close]

BLAST of CmoCh07G002600.1 vs. NCBI nr
Match: gi|802782727|ref|XP_012091528.1| (PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas])

HSP 1 Score: 170.2 bits (430), Expect = 2.3e-39
Identity = 85/113 (75.22%), Postives = 90/113 (79.65%), Query Frame = 1


Query: 23  RNSGGG----GFDGMFGPGNGFDDIPGFGKGWDKGIIGGGYGGGYGGPKGGYGKGGIIRN 82
           R  GGG    G  G FGPG GF  IPGFGKGW  GI+GGGYG GYGGP GGY KGGIIR 
Sbjct: 41  RTRGGGNDNPGMGGYFGPGAGFG-IPGFGKGWGNGIVGGGYGAGYGGPNGGYSKGGIIRP 100

Query: 83  TVVCKEKGPCYNKKVTCPAKCFSSYSRSGKGFGGGGGGGGCTIDCTKKCIGYC 132
           TVVCKE+GPCY KK+TCPAKCF+SYSRSGKG+G GGGGGGCTIDC KKC  YC
Sbjct: 101 TVVCKERGPCYKKKLTCPAKCFTSYSRSGKGYGAGGGGGGCTIDCKKKCTAYC 152

[Close]

BLAST of CmoCh07G002600.1 vs. NCBI nr
Match: gi|351721048|ref|NP_001235149.1| (uncharacterized protein LOC100499725 precursor [Glycine max])

HSP 1 Score: 169.1 bits (427), Expect = 5.2e-39
Identity = 95/145 (65.52%), Postives = 105/145 (72.41%), Query Frame = 1


Query: 3   ISTLLVAVLLLSPAFSLATA-------------RNSGGG---GFDGMFGPGNGFDDIPGF 62
           I+ LL+++LLL  + SLAT               N GGG   G  G FGPG GF  IPGF
Sbjct: 25  ITILLLSLLLLITSPSLATRPASNPDQVKHNKNNNQGGGAGAGAGGFFGPGGGFS-IPGF 84

Query: 63  GKGWDKGIIGGGYGGGYGGPKGGYGKGGIIRNTVVCKEKGPCYNKKVTCPAKCFSSYSRS 122
           G G+  GIIGGGYG GYGGP GG  KGGIIR TVVCK+KGPC+ KKVTCPAKCFSS+SRS
Sbjct: 85  GNGFGNGIIGGGYGSGYGGPNGGSSKGGIIRPTVVCKDKGPCFQKKVTCPAKCFSSFSRS 144

Query: 123 GKGFGGGGGGGGCTIDCTKKCIGYC 132
           GKG+GGGGGGGGCTIDC KKCI YC
Sbjct: 145 GKGYGGGGGGGGCTIDCKKKCIAYC 168

The following BLAST results are available for this feature:

BLAST of CmoCh07G002600.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh07G002600.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KHJ2_CUCSA	1.0e-57	88.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G516980 PE=4 SV=1	[more]
A0A067JDR6_JATCU	1.6e-39	75.22	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21379 PE=4 SV=1	[more]
C6SVW2_SOYBN	3.6e-39	65.52	Uncharacterized protein OS=Glycine max GN=GLYMA_13G244800 PE=2 SV=1	[more]
A0A0B2PLW1_GLYSO	8.0e-39	64.83	Uncharacterized protein OS=Glycine soja GN=glysoja_014337 PE=4 SV=1	[more]
B9S5Z9_RICCO	1.1e-38	64.58	Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1062760 PE=4 ...	[more]

BLAST of CmoCh07G002600.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21620.1	8.8e-37	61.60	glycine-rich protein	[more]
AT1G61255.1	1.4e-18	44.53	BEST Arabidopsis thaliana protein match is: glycine-rich protein (TA...	[more]

BLAST of CmoCh07G002600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433888\|ref\|XP_004134728.1\|	1.5e-57	88.37	PREDICTED: ctenidin-3-like [Cucumis sativus]	[more]
gi\|659078783\|ref\|XP_008439905.1\|	6.1e-56	85.27	PREDICTED: RNA-binding protein cabeza-like [Cucumis melo]	[more]
gi\|1009108847\|ref\|XP_015887003.1\|	1.8e-39	75.93	PREDICTED: glycine-rich cell wall structural protein 2-like isoform X1 [Ziziphus...	[more]
gi\|802782727\|ref\|XP_012091528.1\|	2.3e-39	75.22	PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]	[more]
gi\|351721048\|ref\|NP_001235149.1\|	5.2e-39	65.52	uncharacterized protein LOC100499725 precursor [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh07G002600	CmoCh07G002600	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh07G002600.1	CmoCh07G002600.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G002600.1.CDS.1	CmoCh07G002600.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh07G002600.1.exon.1	CmoCh07G002600.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34789	FAMILY NOT NAMED	coord: 24..131 score: 5.4
None	No IPR available	PANTHER	PTHR34789:SF1	SUBFAMILY NOT NAMED	coord: 24..131 score: 5.4