CmoCh06G010070.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGTTGAAGGCGTAGCCGGCTCGCTCTTTGTTCGTCTCCACTCTGCGGCCGCCATTGCTATAATCGAAGCTCTTGAACATGAAGGTTCGACCTCGTAGATTTCTTTCTTTCTGACTATTTCTTGAGTTTTACTGCTATGCTAATTTTGAGTTTTCGTGTTGATAGTTTAATATTGCGAATCCGACTACTGGATGCCAGAAGAAGCTCGAAATCGACGATGATCAGAAACTGTTAGCTTCCGAATTCCCTTATTCTTCAATCTGTTGTCTTAATCATGAATGTGCATTCTATGTGGATTAATTAATCTGTTCATCTTCAGTCGATTGTTCATATCATAAACATTACATAATTACATGGAGTTGGTCTAATGGAACGTTATCTTTTGGTTTTGACTGAGTTTTACCTAAGCGTGGCTTCATATCTTAGATCTTTGATTTCAATAGCAAGACTTTCTGGAACTAGGGGATTTGAGATGTATAATGAACAAACTGGCTCTCTTCTGATGAGTAGAGTAGTGTTAGCATCGTTTGTTCGATATGTTTGCAGTTATAATTTTTGAGTTAACGTTCAGTCTTATTACGGTGGATTTCAAATAGCTTATATATGACCTCGCTAGAAATCTATCTGCAGTATTTGCATTGCTTGTTGTGTTTTTCTTTCACTTATTTTTTTCTTAGTGAAGCAGCAATTTCTCCGAGAAACAATATTTAATGAGTTTTAAACGAGCAAAAAGAAAGATTCTAGCTATTTCCTTTTTGTTTGTATGTATGTATGTATGTTTGTCATTATTTTACTAAAGTTTAAATTTCTCTATGTATTAAAATTATCCCTTGTCTTTGTTCAGCCGTGCTTTTTTTGACAAGAGGATCTCCCAGGAGGTCAGTGGAGATTCCCTTGGAGAGGTATGCATGCTCTTCAGTTACAATAAATGAAATGTTAGTTCCTAGTTGCTGTCTCTGAGTTGACTATGGATGATTTTTCTCTTATCAGGAATTCAAGGGTTATGTTTTCAAGATTATGGGAGGTTGTGACAAGCAGGGATTCCCAATGAAACAGGGTGTTTTGACTCCTGGCCGTGTCCGTCTTTTACTACACAGAGGTTTGTGGAACTGTTTAGACTAGTGAATGTTTAACCATTTAATCATACTTTTGGCCTTCATTATTTTTTTTCAATAATTTATAGCAATATCACGAGTAATGGAAACATTTGTTTTAACTTTTTTGGACAGGTACCCCTTGTTTCCGTGGTTATGGTAGGCGTAATGGAGAGCGCAGGAGGAAGTCTGTGCGTGGATGCATTGTCAGCCAAGACCTTTCTGTTCTGAATCTGGTTATTGTGAAGAAGGGTGATAATGATCTTCCTGGCTTGACAGACACTGAGAAACCAAGAATGAGGGGTCCCAAGAGGGCATCCAAGATCCGCAAACTTTTCAATCTGTCAAAGGAGGATGATGTCCGAAAGTATGTTAACACATACCGTAGATCATTCACCACAAAATCTGGTATGGCTTACGAATGCTTTTTGTGGTTTTTTTTTATACGAAACAATTTTATTGATGTATAAAATTTACAAAAAGGATTGGGAGTCAGTGGATCAAAAAAAGATTCCTAGTTGGTTAAAAGGGATGCATAAGAATACGAAGCAAAATGATCTAACAATTGACTCCGAAGATATAGAATAACATTTGAGCAAGTAAAAGATATAGCATAATGTATGAGCAATTAAAAAAACTTATCAAAGGCTTGTTCATTGTCCACGAACAATCCACGGTTATGTGCATCCATGGCGTAGCCTTATCCTTTGCTGTTGTGGTTTCTAAACATGTCATATACTAACGAAGTAAGTTGGTGGTTATGTGTGTGATTTTCCGGCAGTGCTTGATAAATGGTGCAAGTACATGTCACGATCTGATATTTCTTTCATAAATTGGATAGTTCAATGAATGTATTCGTATGATAATCTATTCTTTGAATAGTCCCAACGTTTCTCGATGAACCTTGCATTACATTGTTGTTCAATGTTGCTCAATGTTGCTCCTGTTTTCATGTAGATGGATTGTGCTTATTAAAGCTGGAGACAAGGGAGTTGTAGGGGTTAATGATCATGTTGGCCATACTTAGGATTTAATATCCAACAAGTTACTTTGGCAACCAAAAGTAGTAGGCTTTAGGCGGTTGTTCCGTAAGAATAGTCGTCATGTCTGCAACTTGGTGTTGGATGCTCATGAATACAAGAAAAAATAGTAGTGTTGTATTAGTTCCCCAGTCTCATTTTGGCCATTTATAGTAATTGTTTTTTCAGCTGCGTTTATTATGGAATCAATCTGATGATTTATTTGATTGGCAGGCAAAAAGGTGAGCAAAGCCCCGAAGATTCAGAGGTTGGTTACCCCACTGACCCTGCAGAGGAAGCGAGGAAGAATTGCTGAGAAGAAGAAGAGAATTGCGAAGGCCAAGTCTGAGGCTGCTGAGTATCAGAAGCTCCTGGCCTCTAGGTTGAAGGAGCAAAGGGAACGTCGCAGCGAGAGTTTGGCCAAGAAGAGGTCCAGGCTCTCTGCTGCTTCAAAGCCATCCATTGCTGCTTAGTATGTTCACATTATTTATGTCAGTGTTCTGTTCTCTTTATATTTGCCATCTTGTTTTGCTTTTAGAAGAATGAACTTTTTGCGGCTGCATATAATATGAGATCTGGAATGTTTTGGTATTCTTTCGTGTCTGTTAGGGCCTTTGTGGTATTTTCTTCCCTTAATTGTACGCTTATTCTTTTTCTCATTATTAATACTCCCTAGAATCTCTCGCACTAAGACAGACTAAAACCTAAACAAAATTTGAAATTCTAGCTTGATGGTTGGTTCTTGGGCTAGTTTAGTGTAACACCCATGCCTAGGATTTAGGATTTGAAATTTGGATTTGGCACCTGATGGTCCCGTCTTTTCTATCTTCTGTGACATAAGGTTTAGGGTTTACTTCCTTTCAC TGTTGAAGGCGTAGCCGGCTCGCTCTTTGTTCGTCTCCACTCTGCGGCCGCCATTGCTATAATCGAAGCTCTTGAACATGAAGTTTAATATTGCGAATCCGACTACTGGATGCCAGAAGAAGCTCGAAATCGACGATGATCAGAAACTCCGTGCTTTTTTTGACAAGAGGATCTCCCAGGAGGTCAGTGGAGATTCCCTTGGAGAGGAATTCAAGGGTTATGTTTTCAAGATTATGGGAGGTTGTGACAAGCAGGGATTCCCAATGAAACAGGGTGTTTTGACTCCTGGCCGTGTCCGTCTTTTACTACACAGAGGTACCCCTTGTTTCCGTGGTTATGGTAGGCGTAATGGAGAGCGCAGGAGGAAGTCTGTGCGTGGATGCATTGTCAGCCAAGACCTTTCTGTTCTGAATCTGGTTATTGTGAAGAAGGGTGATAATGATCTTCCTGGCTTGACAGACACTGAGAAACCAAGAATGAGGGGTCCCAAGAGGGCATCCAAGATCCGCAAACTTTTCAATCTGTCAAAGGAGGATGATGTCCGAAAGTATGTTAACACATACCGTAGATCATTCACCACAAAATCTGGCAAAAAGGTGAGCAAAGCCCCGAAGATTCAGAGGTTGGTTACCCCACTGACCCTGCAGAGGAAGCGAGGAAGAATTGCTGAGAAGAAGAAGAGAATTGCGAAGGCCAAGTCTGAGGCTGCTGAGTATCAGAAGCTCCTGGCCTCTAGGTTGAAGGAGCAAAGGGAACGTCGCAGCGAGAGTTTGGCCAAGAAGAGGTCCAGGCTCTCTGCTGCTTCAAAGCCATCCATTGCTGCTTAGTATGTTCACATTATTTATGTCAGTGTTCTGTTCTCTTTATATTTGCCATCTTGTTTTGCTTTTAGAAGAATGAACTTTTTGCGGCTGCATATAATATGAGATCTGGAATGTTTTGGTATTCTTTCGTGTCTGTTAGGGCCTTTGTGGTATTTTCTTCCCTTAATTGTACGCTTATTCTTTTTCTCATTATTAATACTCCCTAGAATCTCTCGCACTAAGACAGACTAAAACCTAAACAAAATTTGAAATTCTAGCTTGATGGTTGGTTCTTGGGCTAGTTTAGTGTAACACCCATGCCTAGGATTTAGGATTTGAAATTTGGATTTGGCACCTGATGGTCCCGTCTTTTCTATCTTCTGTGACATAAGGTTTAGGGTTTACTTCCTTTCAC ATGAAGTTTAATATTGCGAATCCGACTACTGGATGCCAGAAGAAGCTCGAAATCGACGATGATCAGAAACTCCGTGCTTTTTTTGACAAGAGGATCTCCCAGGAGGTCAGTGGAGATTCCCTTGGAGAGGAATTCAAGGGTTATGTTTTCAAGATTATGGGAGGTTGTGACAAGCAGGGATTCCCAATGAAACAGGGTGTTTTGACTCCTGGCCGTGTCCGTCTTTTACTACACAGAGGTACCCCTTGTTTCCGTGGTTATGGTAGGCGTAATGGAGAGCGCAGGAGGAAGTCTGTGCGTGGATGCATTGTCAGCCAAGACCTTTCTGTTCTGAATCTGGTTATTGTGAAGAAGGGTGATAATGATCTTCCTGGCTTGACAGACACTGAGAAACCAAGAATGAGGGGTCCCAAGAGGGCATCCAAGATCCGCAAACTTTTCAATCTGTCAAAGGAGGATGATGTCCGAAAGTATGTTAACACATACCGTAGATCATTCACCACAAAATCTGGCAAAAAGGTGAGCAAAGCCCCGAAGATTCAGAGGTTGGTTACCCCACTGACCCTGCAGAGGAAGCGAGGAAGAATTGCTGAGAAGAAGAAGAGAATTGCGAAGGCCAAGTCTGAGGCTGCTGAGTATCAGAAGCTCCTGGCCTCTAGGTTGAAGGAGCAAAGGGAACGTCGCAGCGAGAGTTTGGCCAAGAAGAGGTCCAGGCTCTCTGCTGCTTCAAAGCCATCCATTGCTGCTTAG
BLAST of CmoCh06G010070.1 vs. Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1) HSP 1 Score: 443.7 bits (1140), Expect = 1.3e-123 Identity = 229/243 (94.24%), Postives = 236/243 (97.12%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3) HSP 1 Score: 435.3 bits (1118), Expect = 4.6e-121 Identity = 225/249 (90.36%), Postives = 237/249 (95.18%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2) HSP 1 Score: 434.1 bits (1115), Expect = 1.0e-120 Identity = 225/250 (90.00%), Postives = 238/250 (95.20%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. Swiss-Prot
Match: RS6_TOBAC (40S ribosomal protein S6 (Fragment) OS=Nicotiana tabacum GN=RPS6 PE=2 SV=2) HSP 1 Score: 318.5 bits (815), Expect = 6.3e-86 Identity = 178/204 (87.25%), Postives = 185/204 (90.69%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. Swiss-Prot
Match: RS6_MOUSE (40S ribosomal protein S6 OS=Mus musculus GN=Rps6 PE=1 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 4.1e-77 Identity = 159/241 (65.98%), Postives = 190/241 (78.84%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. TrEMBL
Match: A0A0A0L5R5_CUCSA (40S ribosomal protein S6 OS=Cucumis sativus GN=Csa_3G118140 PE=3 SV=1) HSP 1 Score: 474.2 bits (1219), Expect = 1.0e-130 Identity = 248/249 (99.60%), Postives = 249/249 (100.00%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. TrEMBL
Match: A0A0A0LL90_CUCSA (40S ribosomal protein S6 OS=Cucumis sativus GN=Csa_2G369060 PE=3 SV=1) HSP 1 Score: 471.5 bits (1212), Expect = 6.5e-130 Identity = 246/249 (98.80%), Postives = 249/249 (100.00%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. TrEMBL
Match: A0A0D2T2W0_GOSRA (40S ribosomal protein S6 OS=Gossypium raimondii GN=B456_008G090300 PE=3 SV=1) HSP 1 Score: 467.2 bits (1201), Expect = 1.2e-128 Identity = 242/249 (97.19%), Postives = 248/249 (99.60%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. TrEMBL
Match: A0A0D2QN24_GOSRA (40S ribosomal protein S6 OS=Gossypium raimondii GN=B456_003G041100 PE=3 SV=1) HSP 1 Score: 467.2 bits (1201), Expect = 1.2e-128 Identity = 242/249 (97.19%), Postives = 248/249 (99.60%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. TrEMBL
Match: A0A0B0MIQ0_GOSAR (40S ribosomal protein S6 OS=Gossypium arboreum GN=F383_17949 PE=3 SV=1) HSP 1 Score: 467.2 bits (1201), Expect = 1.2e-128 Identity = 242/249 (97.19%), Postives = 248/249 (99.60%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. TAIR10
Match: AT5G10360.1 (AT5G10360.1 Ribosomal protein S6e) HSP 1 Score: 435.3 bits (1118), Expect = 2.6e-122 Identity = 225/249 (90.36%), Postives = 237/249 (95.18%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. TAIR10
Match: AT4G31700.1 (AT4G31700.1 ribosomal protein S6) HSP 1 Score: 434.1 bits (1115), Expect = 5.8e-122 Identity = 225/250 (90.00%), Postives = 238/250 (95.20%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. NCBI nr
Match: gi|449431994|ref|XP_004133785.1| (PREDICTED: 40S ribosomal protein S6-like [Cucumis sativus]) HSP 1 Score: 474.2 bits (1219), Expect = 1.4e-130 Identity = 248/249 (99.60%), Postives = 249/249 (100.00%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. NCBI nr
Match: gi|659088196|ref|XP_008444852.1| (PREDICTED: LOW QUALITY PROTEIN: 40S ribosomal protein S6-like [Cucumis melo]) HSP 1 Score: 472.6 bits (1215), Expect = 4.2e-130 Identity = 247/249 (99.20%), Postives = 248/249 (99.60%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. NCBI nr
Match: gi|449469843|ref|XP_004152628.1| (PREDICTED: 40S ribosomal protein S6 [Cucumis sativus]) HSP 1 Score: 471.5 bits (1212), Expect = 9.3e-130 Identity = 246/249 (98.80%), Postives = 249/249 (100.00%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. NCBI nr
Match: gi|659074845|ref|XP_008437828.1| (PREDICTED: 40S ribosomal protein S6-like [Cucumis melo]) HSP 1 Score: 469.5 bits (1207), Expect = 3.5e-129 Identity = 246/249 (98.80%), Postives = 247/249 (99.20%), Query Frame = 1
BLAST of CmoCh06G010070.1 vs. NCBI nr
Match: gi|823206980|ref|XP_012437220.1| (PREDICTED: 40S ribosomal protein S6-like isoform X1 [Gossypium raimondii]) HSP 1 Score: 467.2 bits (1201), Expect = 1.8e-128 Identity = 242/249 (97.19%), Postives = 248/249 (99.60%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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