CmoCh06G003890.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G003890.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DUF4050 family protein
Location	Cmo_Chr06 : 1900679 .. 1904005 (-)
Sequence length	1031

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGCCATTAAAACAAGAGACCCAGAATGCAGGATTCCCAAATCCATTGCAGCCCAGATCTGTTCTTCAAATGTTGGGGTCCCATATGGGTTTTTGACAGTAACCCTCAACCATAGATCTATCAACACCTGGCTCAGTTTCGGCCCTTGGATCAAAGGAAACTGCCACTGTGATTCGCCGTTTAGTGCAGAAGAATCTGCGCCGAGTCCACTTTCTTTTCTCTCGTTCTTTCGGGTTTAATCTGTGGCGAATGCTGAAGAGGGGGGCCTTTTCTTCTTCGGTAATTTCGCTCGAGATCAACCCCATACTTGACGATTCCTTACAGGGTTCACTGTTTACTCTGTTTTTGGGGATTAAAAGGTACTGCCCATCTGCCCTACTTCCTGAAATTCTCGTGCCATTTCTGCTTGTTTGGGAACCTTTGTTGGTGTTTTTCTTTCTGGATTTTTTTAATTTTCATTGTTGGGTGATCTGAATCATCGTTGCTTTATGGTGATTGCTGTTTTTGTCTTGTGATTTGTGTTCTGAAATGTGGTTGGGAAGTAACAAAGTTAGGGGATGATTTGGAAACCGTGGATTTGTGAACTTATTGAGAAAGATTGAACTGTTTGATTAGATTAAGGTTGAGATTCCATTGATGGGTCTGTGGATTTCTTCAAATGGTTAAATGTTGTTTGGGTATATAATGAAGAAAGTGTTTAACAAGCTAGAGCTTCAGTGCAATGTTTTGGATGTGGCTTTTAAGTTATTTAGTGCCTTGAAAATAACATAGACACGGCCAGAGTCAATGAATCTAAGCATTCATTGAGAAGGAATAAGAGATAACAAATGGTACACAAAAAGATAGCCTGACCAAAGGGGCTAAACTGAAACAAAAATGGCTCCCTAATCTAACAAAATGAGACCTAAAGAAGCTTTTGAGTATCATGGGAGAGGGGATGTTCGAAGGGACAAAGTTGATGGGTTAAAGGATTGGAATGAAGGTGATATGTTTGTAAGGTGATATGTTATATGAGCGTGGGAAAGGGTAAAGGTACTGTAATACCCAAGCTTACCGCTAGCAGATATTGTCCGCTTTGACTTGTTACTATCGCCGTTAGCCTCGTAGTTTTAAAACGCGTCTACTAGGGAGATGTTTCCACACTCTTATAAGGAATGCTTCGTTCTCCTCTCCAACCGATGTGAGATTTCACAATCCACCCCTTGGGGCTAGCGTCCTTGCTGGCTGGCTCTGATACTATTTATAACAGCCCAAGTCCACCGCTAGTAATTATGGTTCTCTTTGGGCTTTCCCTTTTGAGTTTCCTCCCAAGGTTCTAAAACGCGTCGACTAAGGAGAGGTTTCCACGCTCTTATAAGGAATGTTTTGTTCCCCTCTCCAACCGATGTGGGATCTCACAATCCACCCTCTTGGGGTCCAACGTCCTTGCTGACACATTGCCCAGTGTCTGGCTCTGATACCATTGTAACAACCCAAGCCCACCACTAGTAGATATTGTTCTCTTTGGGCTTCCCCTTCTGGTCTTCCCCTCAAGGTTTTAAAACGCGTCTACTAGGGAGATGTAGGTGTCTGGCTCTAATATCATTTGTAACAATCCAAGCCCACCAATAGTAGATATTGTTTTCTTTGCGCTTTCCCTTATGGCCTTCCCCTCAAGCTTTTGAAACGCGTCTACTAGGGAGAGGTTTCCACACTCTTATAAGTAATGTTTCGTTTCCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCCCTAGTGCCCATCATCCTCATTAGTACATGACCCAGTGTCTGGCTCTGATACCATTTGTAACAGTCTAAGCCCACCACTAACAGATATTGTCCTTTTTGGACTTTCCCTTATGGGGTTCCTTCAAGGTTTCAAAACGCATGTACTAGAGAGAGAGGTTCCACACTCTTATAAGGAATGTTTTGTTCCCATCTCCAACCGATGTGGGATCTCACAAGTATGCATCGGTTTAGTAGTTGGCTTAGGCTTGAGTGAAAGGATTCGTGAGAGAGAGAGAGGGTTAAAGTACCTCAAATTATGATAGTTACTTCCCAAATTACAGTGTTCTTAGACCACATGCATATACAACTCATCTTACTCAAGCTCATACCTTACTTTGTGCTTTGCTCATAGGCCCTATCCTAGAGGCATCTACATGTTAGACCTTGTGCCTTAAAAAACACCTACGCCGGAGGGGATATTGTATTATTATATGGACCCATAAATGGGACTACATCAAAGTTTCCGAAACGTATATCAATTCTTCTCATGGGACTCTTTATCTTTGTTTCATGTACAGACCAGTCTTTTAAGGCAATGTTTGGTCGTTCATTATGGAGAAAATGGAAATCAGCTATACAAATCCTAATTTGAATGGAAATGGAAACCATTCTTCAGTTGATTCAAAGGTTGCCATTAATGACAAGTCCAACGAGACCACCGCATTTGTCAACCACGGTAAATCTTCTTTGTTCAAACCACTGATCGTTAAAATCTAGGATTGAATCTCATACTCTTTGATATTGGTCAAGACATATATGATCGACTAAGAGGAATGAAGTTTGAATCTCCCACCCTCGCATCAAATATCATAGTAAAAGTCGTGTTGTGCATCGTTTTCTGAACAGCGGAGATAGCTTGGCATGAACAAAGAAGGGAATGGGTAGGCGACCGTTTTGAAAACGTGCAACGAGCACCACCGATGGAACCAATCTTGAGGTATTCATTTAGCTTCAAGCATCAGTTTCAAAGCCATTCTTGGGCTACCGTTTCCAAGTGTTTAGCCATTGACGATGCGTTCCATGTTGCAGCTGGACGACAACTTATGAAGATCTTCTTTTGACTGCAGAGCCCTTTCAGCAGCCTATTCCATTAGCTGTAAGGTTTTGTTTGTTCATCCTCATCCTCATCCTTCCCTTTCGATTACTTTAATGAAACTTGTCTGGATTGGATTGTGCAGGAAATGGTAGACTTCTTGGTTGATATCTGGCATGAAGATGGCCTTTATGATTAGGTGTTCTCATACAATCTATCAGAATTGTATTCTTTTTCTTAAAGGTTACTATTCATTTCTGCCATTACCAATGAACGTAATGAATGATCAGAATAGACTGTTATCTTGTACTGAATAGTAACTTAGTGACTTGTAAATGTTATAGTGGCTTACTACATAGACACTGATATGGTGTTGGATACTGCAAATTTGTAGTTTACTATCGTAAGCTCACCGCTAGTAGGTATAGTCCGCTTTGATCCGTTATGTATTGCTGTTAGCTTTACGGTTTTAAAACGTGTTTGTCAGGGAGATGTTTCC

mRNA sequence

AAATGCCATTAAAACAAGAGACCCAGAATGCAGGATTCCCAAATCCATTGCAGCCCAGATCTGTTCTTCAAATGTTGGGGTCCCATATGGGTTTTTGACAGTAACCCTCAACCATAGATCTATCAACACCTGGCTCAGTTTCGGCCCTTGGATCAAAGGAAACTGCCACTGTGATTCGCCGTTTAGTGCAGAAGAATCTGCGCCGAGTCCACTTTCTTTTCTCTCGTTCTTTCGGGTTTAATCTGTGGCGAATGCTGAAGAGGGGGGCCTTTTCTTCTTCGGTAATTTCGCTCGAGATCAACCCCATACTTGACGATTCCTTACAGGGTTCACTGTTTACTCTGTTTTTGGGGATTAAAAGACCAGTCTTTTAAGGCAATGTTTGGTCGTTCATTATGGAGAAAATGGAAATCAGCTATACAAATCCTAATTTGAATGGAAATGGAAACCATTCTTCAGTTGATTCAAAGGTTGCCATTAATGACAAGTCCAACGAGACCACCGCATTTGTCAACCACGCGGAGATAGCTTGGCATGAACAAAGAAGGGAATGGGTAGGCGACCGTTTTGAAAACGTGCAACGAGCACCACCGATGGAACCAATCTTGAGCTGGACGACAACTTATGAAGATCTTCTTTTGACTGCAGAGCCCTTTCAGCAGCCTATTCCATTAGCTGAAATGGTAGACTTCTTGGTTGATATCTGGCATGAAGATGGCCTTTATGATTAGGTGTTCTCATACAATCTATCAGAATTGTATTCTTTTTCTTAAAGGTTACTATTCATTTCTGCCATTACCAATGAACGTAATGAATGATCAGAATAGACTGTTATCTTGTACTGAATAGTAACTTAGTGACTTGTAAATGTTATAGTGGCTTACTACATAGACACTGATATGGTGTTGGATACTGCAAATTTGTAGTTTACTATCGTAAGCTCACCGCTAGTAGGTATAGTCCGCTTTGATCCGTTATGTATTGCTGTTAGCTTTACGGTTTTAAAACGTGTTTGTCAGGGAGATGTTTCC

Coding sequence (CDS)

ATGGAGAAAATGGAAATCAGCTATACAAATCCTAATTTGAATGGAAATGGAAACCATTCTTCAGTTGATTCAAAGGTTGCCATTAATGACAAGTCCAACGAGACCACCGCATTTGTCAACCACGCGGAGATAGCTTGGCATGAACAAAGAAGGGAATGGGTAGGCGACCGTTTTGAAAACGTGCAACGAGCACCACCGATGGAACCAATCTTGAGCTGGACGACAACTTATGAAGATCTTCTTTTGACTGCAGAGCCCTTTCAGCAGCCTATTCCATTAGCTGAAATGGTAGACTTCTTGGTTGATATCTGGCATGAAGATGGCCTTTATGATTAG

Homology

[Close]

BLAST of CmoCh06G003890.1 vs. TrEMBL
Match: A0A0A0LAJ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G740820 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.2e-46
Identity = 96/111 (86.49%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 1   MEKMEISYTNPNLNGNGNHSSVDSKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFEN 60
           MEKMEI+  NPNLNGNGNHSS DSKVA+N KSNE   F+NHAEIAWHE+RREWVGDR EN
Sbjct: 1   MEKMEINGRNPNLNGNGNHSSNDSKVALNGKSNEMPTFINHAEIAWHERRREWVGDRAEN 60

Query: 61  VQRAPPMEPILSWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           VQR  PMEPILSWTTTYED LLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD
Sbjct: 61  VQR-EPMEPILSWTTTYED-LLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 109

[Close]

BLAST of CmoCh06G003890.1 vs. TrEMBL
Match: M5W7Y3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017312mg PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 64/100 (64.00%), Postives = 75/100 (75.00%), Query Frame = 1


Query: 12  NLNGNGNHSSVDSKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFENVQRAPPMEPIL 71
           N N      S  S +   +K  E   F+NHAEIAWHE+RREWVGD  + ++RAP  EPI+
Sbjct: 7   NSNFQEKQPSDASNIVGREKRTEKEVFINHAEIAWHERRREWVGDESQKLRRAP-REPIM 66

Query: 72  SWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           SWTTTYEDLLL+ EPFQ+ IPLAEMVDFLVDIWHE+GLYD
Sbjct: 67  SWTTTYEDLLLSTEPFQESIPLAEMVDFLVDIWHEEGLYD 105

[Close]

BLAST of CmoCh06G003890.1 vs. TrEMBL
Match: A0A061ESX9_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_022272 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-26
Identity = 62/94 (65.96%), Postives = 70/94 (74.47%), Query Frame = 1


Query: 18  NHSSVDSKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFENVQRAPPMEPILSWTTTY 77
           N     S  A  D+S E   FVN AEI+WHE RR+WVGDR +  +R P  EPI+SWTTTY
Sbjct: 13  NQPPTSSNNANKDQSTENEVFVNCAEISWHEIRRQWVGDRSQKSKRMP-REPIMSWTTTY 72

Query: 78  EDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           EDLL + EPFQQ IPLAEMVDFLVDIWHE+GLYD
Sbjct: 73  EDLLCSTEPFQQSIPLAEMVDFLVDIWHEEGLYD 105

[Close]

BLAST of CmoCh06G003890.1 vs. TrEMBL
Match: B9S0F1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1353860 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-26
Identity = 61/103 (59.22%), Postives = 76/103 (73.79%), Query Frame = 1


Query: 14  NGNGNHSSVDSKVAINDKSN-----ETTAFVNHAEIAWHEQRREWVGDRFENVQRAPPME 73
           NG+ +HS  +  +   +  N     E   FVNHAEI WH++R++WVGDR +  Q+ P  E
Sbjct: 4   NGSNSHSHDNGHLGGTEDPNKENCTEKDVFVNHAEITWHKKRKQWVGDRSQKSQKMP-RE 63

Query: 74  PILSWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           PI+SWT TYEDLL ++EPFQQPIPLAEMVDFLVDIWHE+GLYD
Sbjct: 64  PIMSWTATYEDLLCSSEPFQQPIPLAEMVDFLVDIWHEEGLYD 105

[Close]

BLAST of CmoCh06G003890.1 vs. TrEMBL
Match: A0A0D9WYS5_9ORYZ (Uncharacterized protein OS=Leersia perrieri PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.5e-25
Identity = 62/111 (55.86%), Postives = 84/111 (75.68%), Query Frame = 1


Query: 1   MEKMEISYTNPNLNGNGNHSSVDSKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFEN 60
           +E ME +  + +++  GN SS+ + + IND + + T+F+NHA IAW E RR+W GD+ E 
Sbjct: 170 LEAME-NNVSVSVSLEGNISSLPNSI-INDSNGKDTSFINHAAIAWAEMRRQWTGDQ-EK 229

Query: 61  VQRAPPMEPILSWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           V +    EPI+SW+TTY+DLL T+E FQQPIPL+EMVDFLVDIWHE+GLYD
Sbjct: 230 VPKETSREPIISWSTTYDDLLSTSERFQQPIPLSEMVDFLVDIWHEEGLYD 277

[Close]

BLAST of CmoCh06G003890.1 vs. TAIR10
Match: AT5G03440.1 (AT5G03440.1 unknown protein)

HSP 1 Score: 99.0 bits (245), Expect = 2.0e-21
Identity = 47/99 (47.47%), Postives = 62/99 (62.63%), Query Frame = 1


Query: 13  LNGNGNHSSVDSKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFENVQRAPPMEPILS 72
           +  N    +V S  + + + +    FVNHAEIAW E R++WVGD        P  EP++ 
Sbjct: 1   MEANKEPGNVSSNSSNDKEKSSEEIFVNHAEIAWQEMRKKWVGDPSNRTSEMPD-EPVIG 60

Query: 73  WTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           +  TYEDLL +  PF +PIPLAEMVDFL DIWH DGL++
Sbjct: 61  FNATYEDLLTSNTPFNKPIPLAEMVDFLFDIWHGDGLFE 98

[Close]

BLAST of CmoCh06G003890.1 vs. TAIR10
Match: AT3G54880.1 (AT3G54880.1 unknown protein)

HSP 1 Score: 97.8 bits (242), Expect = 4.4e-21
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 23  DSKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFENVQRAPPMEPILSWTTTYEDLLL 82
           D K ++   S  T   VNH    W E R +WVGD+    ++    + I+SW+TTYEDLL 
Sbjct: 25  DEKSSVKTNSENTLTLVNHGAKMWQENREKWVGDQSRQ-RKNTAKDQIISWSTTYEDLLS 84

Query: 83  TAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           T EPF + IPL EMVDFLVDIW+++GLYD
Sbjct: 85  THEPFSESIPLPEMVDFLVDIWYDEGLYD 112

[Close]

BLAST of CmoCh06G003890.1 vs. TAIR10
Match: AT3G15770.1 (AT3G15770.1 unknown protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.7e-17
Identity = 47/113 (41.59%), Postives = 65/113 (57.52%), Query Frame = 1


Query: 8   YTNPNLNGNGN-HSSVDSKVAIN---------DKSNETTAFVNHAEIAWHEQRREWVGDR 67
           +TN  L+   N H SV S    N           SNE   FVNH  + W++ R++WVGD+
Sbjct: 49  WTNTTLDMESNAHGSVSSISTTNLTIDSQGCGSSSNEPAEFVNHGLVLWNQTRQQWVGDK 108

Query: 68  FENVQRAPPMEPILSWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLY 111
               +++   EPIL+   TYE LL + + F +PIPL EMV FLV++W E+GLY
Sbjct: 109 RSESRKSVGREPILNENVTYESLLGSNKRFPRPIPLDEMVQFLVEVWEEEGLY 161

[Close]

BLAST of CmoCh06G003890.1 vs. TAIR10
Match: AT5G25360.1 (AT5G25360.1 unknown protein)

HSP 1 Score: 78.6 bits (192), Expect = 2.8e-15
Identity = 40/104 (38.46%), Postives = 61/104 (58.65%), Query Frame = 1


Query: 10  NPNLNGNGNHSSVD--SKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFENVQRAPPM 69
           N  L    + SS+   +  + +  ++  T FVNH    W++ R++W+ +     ++A   
Sbjct: 67  NSTLQSQRSMSSISFTNNTSTSASTSNPTEFVNHGLNLWNQTRQQWLANGTSQ-KKAKVR 126

Query: 70  EPILSWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           EP +SW  TYE LL   + F +PIPL EMVDFLVD+W ++GLYD
Sbjct: 127 EPTISWNATYESLLGMNKRFSRPIPLPEMVDFLVDVWEQEGLYD 169

[Close]

BLAST of CmoCh06G003890.1 vs. TAIR10
Match: AT4G32342.1 (AT4G32342.1 unknown protein)

HSP 1 Score: 77.0 bits (188), Expect = 8.0e-15
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 1


Query: 32  SNETTAFVNHAEIAWHEQRREWVGDRFENVQRAPPMEPILSWTTTYEDLLLTAEPFQQPI 91
           ++ +T FVNH  I W+  R++W  +     Q   P EP +SW +TY+ LL T + F QPI
Sbjct: 84  TSNSTEFVNHGLILWNHTRQQW-RECLTRQQCLVP-EPAISWNSTYDSLLSTNKLFPQPI 143

Query: 92  PLAEMVDFLVDIWHEDGLY 111
           PL EMV FLVD+W E+GLY
Sbjct: 144 PLKEMVHFLVDVWEEEGLY 160

[Close]

BLAST of CmoCh06G003890.1 vs. NCBI nr
Match: gi|449440137|ref|XP_004137841.1| (PREDICTED: uncharacterized protein LOC101221441 [Cucumis sativus])

HSP 1 Score: 193.7 bits (491), Expect = 1.7e-46
Identity = 96/111 (86.49%), Postives = 100/111 (90.09%), Query Frame = 1


Query: 1   MEKMEISYTNPNLNGNGNHSSVDSKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFEN 60
           MEKMEI+  NPNLNGNGNHSS DSKVA+N KSNE   F+NHAEIAWHE+RREWVGDR EN
Sbjct: 1   MEKMEINGRNPNLNGNGNHSSNDSKVALNGKSNEMPTFINHAEIAWHERRREWVGDRAEN 60

Query: 61  VQRAPPMEPILSWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           VQR  PMEPILSWTTTYED LLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD
Sbjct: 61  VQR-EPMEPILSWTTTYED-LLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 109

[Close]

BLAST of CmoCh06G003890.1 vs. NCBI nr
Match: gi|659084110|ref|XP_008442713.1| (PREDICTED: uncharacterized protein LOC103486506 isoform X1 [Cucumis melo])

HSP 1 Score: 185.3 bits (469), Expect = 5.9e-44
Identity = 92/111 (82.88%), Postives = 97/111 (87.39%), Query Frame = 1


Query: 1   MEKMEISYTNPNLNGNGNHSSVDSKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFEN 60
           MEK EI+  NPNLNGNGNHSS DSKVA+N KSNE   F+NHAEIAWHE+R+EWVGDR EN
Sbjct: 1   MEKTEINGGNPNLNGNGNHSSGDSKVALNGKSNEMPTFINHAEIAWHERRKEWVGDRSEN 60

Query: 61  VQRAPPMEPILSWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           VQR  P EPILSWT TYED LLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD
Sbjct: 61  VQR-EPKEPILSWTMTYED-LLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 109

[Close]

BLAST of CmoCh06G003890.1 vs. NCBI nr
Match: gi|694367279|ref|XP_009362103.1| (PREDICTED: uncharacterized protein LOC103952265 [Pyrus x bretschneideri])

HSP 1 Score: 135.6 bits (340), Expect = 5.4e-29
Identity = 66/100 (66.00%), Postives = 76/100 (76.00%), Query Frame = 1


Query: 12  NLNGNGNHSSVDSKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFENVQRAPPMEPIL 71
           N N   N  S  S +A   K NE   FVN+AEIAWHE+RREW+GD+ +  QRAP  EPI+
Sbjct: 7   NSNSQENQPSDASNIASRGKLNEKEVFVNNAEIAWHEKRREWIGDQSQKSQRAP-REPIM 66

Query: 72  SWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           SWTTTYEDLL + EPFQ+PIPLAEMVDFLVDIW E+GLYD
Sbjct: 67  SWTTTYEDLLSSTEPFQEPIPLAEMVDFLVDIWQEEGLYD 105

[Close]

BLAST of CmoCh06G003890.1 vs. NCBI nr
Match: gi|658047874|ref|XP_008359625.1| (PREDICTED: uncharacterized protein LOC103423334 isoform X1 [Malus domestica])

HSP 1 Score: 133.7 bits (335), Expect = 2.0e-28
Identity = 64/100 (64.00%), Postives = 76/100 (76.00%), Query Frame = 1


Query: 12  NLNGNGNHSSVDSKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFENVQRAPPMEPIL 71
           N N N N  S  S +   +K  E   F+NHAE+AW E+RREWVGD+ +  QRAP  EPI+
Sbjct: 7   NSNSNENQPSDASNIDRREKLTEKEVFINHAEVAWQERRREWVGDQSQKSQRAP-REPIM 66

Query: 72  SWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           SWTTTYEDLLL+ EPFQ+PIPLAEMVDFLV+IW E+GLYD
Sbjct: 67  SWTTTYEDLLLSTEPFQEPIPLAEMVDFLVNIWQEEGLYD 105

[Close]

BLAST of CmoCh06G003890.1 vs. NCBI nr
Match: gi|595817151|ref|XP_007204169.1| (hypothetical protein PRUPE_ppa017312mg [Prunus persica])

HSP 1 Score: 133.3 bits (334), Expect = 2.7e-28
Identity = 64/100 (64.00%), Postives = 75/100 (75.00%), Query Frame = 1


Query: 12  NLNGNGNHSSVDSKVAINDKSNETTAFVNHAEIAWHEQRREWVGDRFENVQRAPPMEPIL 71
           N N      S  S +   +K  E   F+NHAEIAWHE+RREWVGD  + ++RAP  EPI+
Sbjct: 7   NSNFQEKQPSDASNIVGREKRTEKEVFINHAEIAWHERRREWVGDESQKLRRAP-REPIM 66

Query: 72  SWTTTYEDLLLTAEPFQQPIPLAEMVDFLVDIWHEDGLYD 112
           SWTTTYEDLLL+ EPFQ+ IPLAEMVDFLVDIWHE+GLYD
Sbjct: 67  SWTTTYEDLLLSTEPFQESIPLAEMVDFLVDIWHEEGLYD 105

The following BLAST results are available for this feature:

BLAST of CmoCh06G003890.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G003890.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAJ4_CUCSA	1.2e-46	86.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G740820 PE=4 SV=1	[more]
M5W7Y3_PRUPE	1.9e-28	64.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017312mg PE=4 SV=1	[more]
A0A061ESX9_THECC	1.0e-26	65.96	Uncharacterized protein OS=Theobroma cacao GN=TCM_022272 PE=4 SV=1	[more]
B9S0F1_RICCO	1.0e-26	59.22	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1353860 PE=4 SV=1	[more]
A0A0D9WYS5_9ORYZ	1.5e-25	55.86	Uncharacterized protein OS=Leersia perrieri PE=4 SV=1	[more]

BLAST of CmoCh06G003890.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G03440.1	2.0e-21	47.47	unknown protein	[more]
AT3G54880.1	4.4e-21	50.56	unknown protein	[more]
AT3G15770.1	1.7e-17	41.59	unknown protein	[more]
AT5G25360.1	2.8e-15	38.46	unknown protein	[more]
AT4G32342.1	8.0e-15	48.10	unknown protein	[more]

BLAST of CmoCh06G003890.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449440137\|ref\|XP_004137841.1\|	1.7e-46	86.49	PREDICTED: uncharacterized protein LOC101221441 [Cucumis sativus]	[more]
gi\|659084110\|ref\|XP_008442713.1\|	5.9e-44	82.88	PREDICTED: uncharacterized protein LOC103486506 isoform X1 [Cucumis melo]	[more]
gi\|694367279\|ref\|XP_009362103.1\|	5.4e-29	66.00	PREDICTED: uncharacterized protein LOC103952265 [Pyrus x bretschneideri]	[more]
gi\|658047874\|ref\|XP_008359625.1\|	2.0e-28	64.00	PREDICTED: uncharacterized protein LOC103423334 isoform X1 [Malus domestica]	[more]
gi\|595817151\|ref\|XP_007204169.1\|	2.7e-28	64.00	hypothetical protein PRUPE_ppa017312mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025124	DUF4050

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009536	plastid
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G003890	CmoCh06G003890	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G003890.1	CmoCh06G003890.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G003890.1.three_prime_UTR.1	CmoCh06G003890.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G003890.1.CDS.4	CmoCh06G003890.1.CDS.4	CDS
CmoCh06G003890.1.CDS.3	CmoCh06G003890.1.CDS.3	CDS
CmoCh06G003890.1.CDS.2	CmoCh06G003890.1.CDS.2	CDS
CmoCh06G003890.1.CDS.1	CmoCh06G003890.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G003890.1.five_prime_UTR.2	CmoCh06G003890.1.five_prime_UTR.2	five_prime_UTR
CmoCh06G003890.1.five_prime_UTR.1	CmoCh06G003890.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G003890.1.exon.5	CmoCh06G003890.1.exon.5	exon
CmoCh06G003890.1.exon.4	CmoCh06G003890.1.exon.4	exon
CmoCh06G003890.1.exon.3	CmoCh06G003890.1.exon.3	exon
CmoCh06G003890.1.exon.2	CmoCh06G003890.1.exon.2	exon
CmoCh06G003890.1.exon.1	CmoCh06G003890.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025124	Domain of unknown function DUF4050	PFAM	PF13259	DUF4050	coord: 72..111 score: 3.0
None	No IPR available	PANTHER	PTHR33373	FAMILY NOT NAMED	coord: 31..111 score: 1.2