CmoCh06G000230.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G000230.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Expressed protein) (Transmembrane amino acid transporter family protein)
Location	Cmo_Chr06 : 147063 .. 149497 (-)
Sequence length	615

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGAAATTGCTTCCTTGACACTGCTCAAATATGCACTGTTGATGAATCCATTGGCAAGAAGTATAGAGGAGCTACTACCACGTAGAATTTCAAATAGCTTCTGGTGTTTCATTCTTCTAAGAACAGCACTTGTTGTTTCTTCTGTTTGCGTGGCCTTCCTTCTGCCCTTTTTTGGTAATTGTCTTCTTCAAGTGTTTTGTTATTAGTTTACTTTCATTTTGTAAGTCATCTTAACATAATGGATTGTAATATAATGGATGATTATTACCTTTCCACTGACGCAATAGATGATGATAACCCTCCAAAAACAAACTTTCATCTAGTACCCCCAAATTGTTAGCTCATATATTCTCATGATAGGAACTCATTGATTAAGCATCTTGCTGTAAAGCCAAATTGTTAACTTTCCATGAGTAGCTTTATCCAAACATGGCAGATGAATTGAGCGTAAATAAAGCAGATTACTATTTATCTTGATTGTAGGTCTCGTGATGGCTTTGATTGGCTCCCTTCTCAGCATACTTTTGGTAAGTGCATTTTGTTGGTTCCTTTTCTTGATGAGATTGTATTCTTGTTTCTCCATTGCCCTTCGTTTTAGCTCATAGCTAGTTGTACCTAATGATCGTCAATATGTCAGATTTTAAATGGTCAACCAGCGGGCTGTTAGCTGTTAGCTGTTAATTGTTGGTAGCTTTTGTTATATAACTGCCATTAACATTTATTTTTTGGGTTAAAGAAATATAACCTTTCATTTGAGCATTAAGATCCACCCCTTCCAATCGTGCTCTTCAAGGGATAATCAAGTCAATTTAGCACGTTTCCACTGTTTTTCTCTGACTGAGATTTCTTCCATAGCTAATCAGCCCCGACTTTTAATATGTATCCGAAATATTTGCTTGAACGAAGGAAGGGATAATCATATATTCTTTAGATGTGGGTACATTCAACTTGAAGTGCGTTCCTATTTACTTGAGCAATAGGTGAAAAGGTTGATGGAAAATTAAAAATATAATTTGTGTATGTCATTGTCTATTAATTTCCATTCTTCGATCATCTCCCCTTCACCCTCCTCTAGAGCCTATTGGTAGCTGAACCATGGTGAATTGCCCAGTTTGTTATCAGTCAAAATCTACTAAGAGTTGGACTTAGGCTTGTTCATTTGTCTTCTTATGGATATGGATGTGTTTCTAATTGTATGATATTTGATTCAGGCGGTAATAGTGCCAGCCGTATGTTTTTTGAAAATCATGGGAGGCGAAGCTTCAAAGATGCAGGTATGCATCTTTTTAACTTATTATTTTTTTCTTTTTTTTTTAATTAAGCTTCTTGATAAAGTTTTATGAATTACAATAGTAGGGAGATAGTCCTCTTATATCCAGTATTCCCTTCTCAAGAAATAACAATGGACGCAATATATTGTGAATTTCATGAGGAAACTAATAGAATGTTAAGAAAGTTACATAAAACTTCTTTAGAGGATCATGGATGAACTAACGCAAGTCTAATCACTCAACTAAGAAAACCAATTACACTCAGACCCTCACTGTAACTTGAGGTTTTATGAAGTTTGAGCTTGGTACACGGATATTTAAACGGTCGAGGCATTTTGCTATTTCGTGAGCTGTTTGAATTTCTGTTTTAACATATTTCTCGTAGGGAAAGAGAATGAGAAATATTGTAAGGGAAAAAAAAAGGAAAAAAAACTCTAGAATGGGTGGATTGGGTGGCTGTGTAATGCAGGAAATCATTTTCTCTTAATAGGACTTGGAGTTTGTTCTGCAGAGAGACAAGATAGGAAAAGGAGAGTTGGTGTAGGCACAGAATATAATTAATCAGTGTGATTACACATTAATATTCTTAGTGTAAGGTTTATGGAGAAAGTAAGAAATGAGTATGATTACACTAACATTCATAGAAATTTACCGCCTGAACATTGGGAAATTCAAAACCAGCAGCAGAACTTCTCACTATGATTACACAATTTTCTTAAAGCTGTCTTTGACTCTTTATAAAAATTCATGTTCTATCCGAAAACGTTAAATGAAACATCTGTAATTTCTTATTCATTTGGTTTCTTTATTCTCCTTCTTCGTGAAATCAGATGACTTGGAGCAGCTTTATCATTGGACTCGGTGTCCTTAGTGCAATCTTTGGAACATACTCTTCTGTGTCACAGATTGCAGAGAGTTACTGAAACATATATGGTCAGAATAAATTTTCTGTAGGCTTCGTGTCTTGTAGCTGTCGATAGCTTCAGGTCATACATTATGCAAGCAGTTGACTTCTAAATAATTGCATATCCATTATTGCTTAATTGTTGTGTTGCCTCTCTTTATTGGGTGAAGATGTTGATTTCATGTTTGCTTATGCTGCTTAGATTAGCTATTTCTTTTGTGGTTTCGTCTTCACAAACATTCCATTTGGTCTGCGC

mRNA sequence

ATGATTGAAATTGCTTCCTTGACACTGCTCAAATATGCACTGTTGATGAATCCATTGGCAAGAAGTATAGAGGAGCTACTACCACGTAGAATTTCAAATAGCTTCTGGTGTTTCATTCTTCTAAGAACAGCACTTGTTGTTTCTTCTGTTTGCGTGGCCTTCCTTCTGCCCTTTTTTGGTCTCGTGATGGCTTTGATTGGCTCCCTTCTCAGCATACTTTTGGCGGTAATAGTGCCAGCCGTATGTTTTTTGAAAATCATGGGAGGCGAAGCTTCAAAGATGCAGATGACTTGGAGCAGCTTTATCATTGGACTCGGTGTCCTTAGTGCAATCTTTGGAACATACTCTTCTGTGTCACAGATTGCAGAGAGTTACTGAAACATATATGGTCAGAATAAATTTTCTGTAGGCTTCGTGTCTTGTAGCTGTCGATAGCTTCAGGTCATACATTATGCAAGCAGTTGACTTCTAAATAATTGCATATCCATTATTGCTTAATTGTTGTGTTGCCTCTCTTTATTGGGTGAAGATGTTGATTTCATGTTTGCTTATGCTGCTTAGATTAGCTATTTCTTTTGTGGTTTCGTCTTCACAAACATTCCATTTGGTCTGCGC

Coding sequence (CDS)

ATGATTGAAATTGCTTCCTTGACACTGCTCAAATATGCACTGTTGATGAATCCATTGGCAAGAAGTATAGAGGAGCTACTACCACGTAGAATTTCAAATAGCTTCTGGTGTTTCATTCTTCTAAGAACAGCACTTGTTGTTTCTTCTGTTTGCGTGGCCTTCCTTCTGCCCTTTTTTGGTCTCGTGATGGCTTTGATTGGCTCCCTTCTCAGCATACTTTTGGCGGTAATAGTGCCAGCCGTATGTTTTTTGAAAATCATGGGAGGCGAAGCTTCAAAGATGCAGATGACTTGGAGCAGCTTTATCATTGGACTCGGTGTCCTTAGTGCAATCTTTGGAACATACTCTTCTGTGTCACAGATTGCAGAGAGTTACTGA

Homology

[Close]

BLAST of CmoCh06G000230.1 vs. TrEMBL
Match: A0A0A0LBQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G820510 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 8.2e-41
Identity = 96/125 (76.80%), Postives = 114/125 (91.20%), Query Frame = 1


Query: 1   MIEIASLTLLKYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFG 60
           MIE ASLTLLKYALLMNPLARSIEELLP RIS S+ CFILLRTALV SSVCVAF+LPFFG
Sbjct: 1   MIEFASLTLLKYALLMNPLARSIEELLPPRISASYGCFILLRTALVASSVCVAFILPFFG 60

Query: 61  LVMALIGSLLSILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQ 120
           LVM+LIGSLLSIL++VIVP +C+LKIMG +A+K+Q+T S  ++GLG++SAI GTYSS+S+
Sbjct: 61  LVMSLIGSLLSILVSVIVPTMCYLKIMGSDATKIQITSSIVVVGLGIVSAIMGTYSSLSK 120

Query: 121 IAESY 126
           IA+SY
Sbjct: 121 IAKSY 125

[Close]

BLAST of CmoCh06G000230.1 vs. TrEMBL
Match: W9QTY5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013934 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 2.7e-36
Identity = 89/114 (78.07%), Postives = 101/114 (88.60%), Query Frame = 1


Query: 12  YALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIGSLLS 71
           YALLMNPLARSIEELLP R+SNS WCFILLRTALV SSVC AFLLPFFGLVMALIGSLLS
Sbjct: 731 YALLMNPLARSIEELLPIRVSNSPWCFILLRTALVASSVCAAFLLPFFGLVMALIGSLLS 790

Query: 72  ILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQIAESY 126
           IL+AVI+PA+CFLKI+G +A+ +Q+  S  I+ LG++SAI GTYSSVSQIA SY
Sbjct: 791 ILVAVIMPALCFLKIVGKKATTVQIVSSIAIVVLGIISAILGTYSSVSQIANSY 844

[Close]

BLAST of CmoCh06G000230.1 vs. TrEMBL
Match: V4MJN3_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016504mg PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-34
Identity = 80/115 (69.57%), Postives = 99/115 (86.09%), Query Frame = 1


Query: 11  KYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIGSLL 70
           KYALLMNPLARSIEELLP RIS + WCF+LLRTALV SSVC AFL+PFFGLVMALIGSLL
Sbjct: 414 KYALLMNPLARSIEELLPERISENIWCFLLLRTALVASSVCSAFLIPFFGLVMALIGSLL 473

Query: 71  SILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQIAESY 126
           SIL+A+++PA+CF+KIMG +A++ QM  SS I+ +G++S   GTYSSV++I  +Y
Sbjct: 474 SILVAIVMPALCFIKIMGNKATRTQMILSSTIVAIGLVSGALGTYSSVAKIIRNY 528

[Close]

BLAST of CmoCh06G000230.1 vs. TrEMBL
Match: O80668_ARATH (Expressed protein OS=Arabidopsis thaliana GN=At2g41190 PE=2 SV=2)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-34
Identity = 80/115 (69.57%), Postives = 99/115 (86.09%), Query Frame = 1


Query: 11  KYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIGSLL 70
           KYALLMNPLARSIEELLP R+S + WCF+LLRTALV SSVC AFL+PFFGL+MALIGSLL
Sbjct: 421 KYALLMNPLARSIEELLPERMSENIWCFLLLRTALVASSVCSAFLIPFFGLMMALIGSLL 480

Query: 71  SILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQIAESY 126
           SIL+A+I+PA+CF+KIMG +A++ QM  SS I+ +GV+S   GTYSSV++I  +Y
Sbjct: 481 SILVAIIMPALCFIKIMGNKATRTQMILSSIIVAIGVVSGTLGTYSSVAKIIRNY 535

[Close]

BLAST of CmoCh06G000230.1 vs. TrEMBL
Match: Q8H139_ARATH (Putative uncharacterized protein At2g41190 (Fragment) OS=Arabidopsis thaliana GN=At2g41190 PE=2 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.5e-34
Identity = 80/115 (69.57%), Postives = 99/115 (86.09%), Query Frame = 1


Query: 11  KYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIGSLL 70
           KYALLMNPLARSIEELLP R+S + WCF+LLRTALV SSVC AFL+PFFGL+MALIGSLL
Sbjct: 292 KYALLMNPLARSIEELLPERMSENIWCFLLLRTALVASSVCSAFLIPFFGLMMALIGSLL 351

Query: 71  SILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQIAESY 126
           SIL+A+I+PA+CF+KIMG +A++ QM  SS I+ +GV+S   GTYSSV++I  +Y
Sbjct: 352 SILVAIIMPALCFIKIMGNKATRTQMILSSIIVAIGVVSGTLGTYSSVAKIIRNY 406

[Close]

BLAST of CmoCh06G000230.1 vs. TAIR10
Match: AT2G41190.1 (AT2G41190.1 Transmembrane amino acid transporter family protein)

HSP 1 Score: 153.7 bits (387), Expect = 7.6e-38
Identity = 80/115 (69.57%), Postives = 99/115 (86.09%), Query Frame = 1


Query: 11  KYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIGSLL 70
           KYALLMNPLARSIEELLP R+S + WCF+LLRTALV SSVC AFL+PFFGL+MALIGSLL
Sbjct: 421 KYALLMNPLARSIEELLPERMSENIWCFLLLRTALVASSVCSAFLIPFFGLMMALIGSLL 480

Query: 71  SILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQIAESY 126
           SIL+A+I+PA+CF+KIMG +A++ QM  SS I+ +GV+S   GTYSSV++I  +Y
Sbjct: 481 SILVAIIMPALCFIKIMGNKATRTQMILSSIIVAIGVVSGTLGTYSSVAKIIRNY 535

[Close]

BLAST of CmoCh06G000230.1 vs. TAIR10
Match: AT2G39130.1 (AT2G39130.1 Transmembrane amino acid transporter family protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-19
Identity = 53/113 (46.90%), Postives = 79/113 (69.91%), Query Frame = 1


Query: 11  KYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIGSLL 70
           KYAL ++P+A S+EEL+P R   S W  I +RT LV S++ V   +PFFGLVM+LIGSLL
Sbjct: 434 KYALTISPVAMSLEELIPSRHIRSHWYAIGIRTLLVFSTLLVGLAIPFFGLVMSLIGSLL 493

Query: 71  SILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQIAE 124
           ++L+ +I+P  CFL I+  + +  QM     II +G +S++ G+YS++S+I E
Sbjct: 494 TMLVTLILPPACFLSIVRRKVTPTQMMLCVLIIIVGAISSVIGSYSALSKIVE 546

[Close]

BLAST of CmoCh06G000230.1 vs. TAIR10
Match: AT5G02180.1 (AT5G02180.1 Transmembrane amino acid transporter family protein)

HSP 1 Score: 85.9 bits (211), Expect = 1.9e-17
Identity = 52/114 (45.61%), Postives = 75/114 (65.79%), Query Frame = 1


Query: 9   LLKYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIGS 68
           + KYAL + P+  S+EEL+P     S    IL RT LV S++ VA  +PFF +V ALIGS
Sbjct: 432 MTKYALTITPIVMSLEELIPTAKMRSRGVSILFRTMLVTSTLVVALSVPFFAIVAALIGS 491

Query: 69  LLSILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQIA 123
            L++L+A+I P +C+L I+ G+ S  Q+    FII  GV+S   GTYS++S++A
Sbjct: 492 FLAMLVALIFPCLCYLSILKGKLSNTQIGLCIFIIVFGVVSGCCGTYSAISRLA 545

[Close]

BLAST of CmoCh06G000230.1 vs. TAIR10
Match: AT5G02170.1 (AT5G02170.1 Transmembrane amino acid transporter family protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-13
Identity = 45/115 (39.13%), Postives = 74/115 (64.35%), Query Frame = 1


Query: 9   LLKYALLMNPLARSIEELLPR--RISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALI 68
           + KYAL + P+  S+EEL+P   R   S    +L RT LV+S++ VA  +PFF  V ALI
Sbjct: 407 MTKYALTITPVMLSLEELIPSSSRKMRSKGVSMLFRTILVLSTLVVALTVPFFATVAALI 466

Query: 69  GSLLSILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQI 122
           GS +++L+A+I P +C++ IM G  +  Q+     I+ +G++S   GTYS+++++
Sbjct: 467 GSFIAMLIALIFPCLCYISIMKGRLTNFQIGICILIVIIGIVSGCCGTYSAIARL 521

[Close]

BLAST of CmoCh06G000230.1 vs. TAIR10
Match: AT3G09330.1 (AT3G09330.1 Transmembrane amino acid transporter family protein)

HSP 1 Score: 72.0 bits (175), Expect = 2.9e-13
Identity = 45/114 (39.47%), Postives = 71/114 (62.28%), Query Frame = 1


Query: 9   LLKYALLMNPLARSIEEL-LPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIG 68
           + KYAL + P+   +EEL LP     S+   I ++T LV+S++ VA   PFF ++ AL+G
Sbjct: 406 MTKYALALTPIVLGLEELMLPSEKMRSYGVSIFIKTILVLSTLVVALTFPFFAIMGALMG 465

Query: 69  SLLSILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQI 122
           S L++L+  I P +C+L I+ G  SK Q+    FII  G++S   GTYS++ ++
Sbjct: 466 SFLAMLVDFIFPCLCYLSILKGRLSKTQIGICVFIIISGIVSGCCGTYSAIGRL 519

[Close]

BLAST of CmoCh06G000230.1 vs. NCBI nr
Match: gi|700204312|gb|KGN59445.1| (hypothetical protein Csa_3G820510 [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-40
Identity = 96/125 (76.80%), Postives = 114/125 (91.20%), Query Frame = 1


Query: 1   MIEIASLTLLKYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFG 60
           MIE ASLTLLKYALLMNPLARSIEELLP RIS S+ CFILLRTALV SSVCVAF+LPFFG
Sbjct: 1   MIEFASLTLLKYALLMNPLARSIEELLPPRISASYGCFILLRTALVASSVCVAFILPFFG 60

Query: 61  LVMALIGSLLSILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQ 120
           LVM+LIGSLLSIL++VIVP +C+LKIMG +A+K+Q+T S  ++GLG++SAI GTYSS+S+
Sbjct: 61  LVMSLIGSLLSILVSVIVPTMCYLKIMGSDATKIQITSSIVVVGLGIVSAIMGTYSSLSK 120

Query: 121 IAESY 126
           IA+SY
Sbjct: 121 IAKSY 125

[Close]

BLAST of CmoCh06G000230.1 vs. NCBI nr
Match: gi|659085131|ref|XP_008443262.1| (PREDICTED: vacuolar amino acid transporter 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 3.5e-37
Identity = 87/115 (75.65%), Postives = 105/115 (91.30%), Query Frame = 1


Query: 11  KYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIGSLL 70
           KYALLMNPLARSIEELLP RIS S+ CFILLRTALV SSVCVAFLLPFFGLVM+LIGSLL
Sbjct: 425 KYALLMNPLARSIEELLPPRISASYGCFILLRTALVASSVCVAFLLPFFGLVMSLIGSLL 484

Query: 71  SILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQIAESY 126
           SIL++VIVP +C+LKIMG +A+K+ +T S F++G+G++SAI GTYSS+S+IA+SY
Sbjct: 485 SILVSVIVPTICYLKIMGSDATKIHITSSIFVVGIGIVSAIMGTYSSLSRIAKSY 539

[Close]

BLAST of CmoCh06G000230.1 vs. NCBI nr
Match: gi|731400499|ref|XP_010653971.1| (PREDICTED: vacuolar amino acid transporter 1 isoform X1 [Vitis vinifera])

HSP 1 Score: 162.9 bits (411), Expect = 3.5e-37
Identity = 87/115 (75.65%), Postives = 102/115 (88.70%), Query Frame = 1


Query: 11  KYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIGSLL 70
           KYALLMNPLARSIEELLP RISNSFWCFILLRTALV+SSVCVAFLLPFFGLVM+LIGSLL
Sbjct: 423 KYALLMNPLARSIEELLPVRISNSFWCFILLRTALVISSVCVAFLLPFFGLVMSLIGSLL 482

Query: 71  SILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQIAESY 126
           S+L++VI+P +C+L+IMG +A+K Q+  SS +  LGV+ AI GTYSS+SQIA  Y
Sbjct: 483 SVLVSVIIPTLCYLRIMGNKATKAQVIVSSGVAALGVICAILGTYSSLSQIARQY 537

[Close]

BLAST of CmoCh06G000230.1 vs. NCBI nr
Match: gi|731400501|ref|XP_010653972.1| (PREDICTED: vacuolar amino acid transporter 1 isoform X2 [Vitis vinifera])

HSP 1 Score: 162.9 bits (411), Expect = 3.5e-37
Identity = 87/115 (75.65%), Postives = 102/115 (88.70%), Query Frame = 1


Query: 11  KYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIGSLL 70
           KYALLMNPLARSIEELLP RISNSFWCFILLRTALV+SSVCVAFLLPFFGLVM+LIGSLL
Sbjct: 415 KYALLMNPLARSIEELLPVRISNSFWCFILLRTALVISSVCVAFLLPFFGLVMSLIGSLL 474

Query: 71  SILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQIAESY 126
           S+L++VI+P +C+L+IMG +A+K Q+  SS +  LGV+ AI GTYSS+SQIA  Y
Sbjct: 475 SVLVSVIIPTLCYLRIMGNKATKAQVIVSSGVAALGVICAILGTYSSLSQIARQY 529

[Close]

BLAST of CmoCh06G000230.1 vs. NCBI nr
Match: gi|778685205|ref|XP_011652187.1| (PREDICTED: vacuolar amino acid transporter 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-36
Identity = 87/115 (75.65%), Postives = 105/115 (91.30%), Query Frame = 1


Query: 11  KYALLMNPLARSIEELLPRRISNSFWCFILLRTALVVSSVCVAFLLPFFGLVMALIGSLL 70
           KYALLMNPLARSIEELLP RIS S+ CFILLRTALV SSVCVAF+LPFFGLVM+LIGSLL
Sbjct: 425 KYALLMNPLARSIEELLPPRISASYGCFILLRTALVASSVCVAFILPFFGLVMSLIGSLL 484

Query: 71  SILLAVIVPAVCFLKIMGGEASKMQMTWSSFIIGLGVLSAIFGTYSSVSQIAESY 126
           SIL++VIVP +C+LKIMG +A+K+Q+T S  ++GLG++SAI GTYSS+S+IA+SY
Sbjct: 485 SILVSVIVPTMCYLKIMGSDATKIQITSSIVVVGLGIVSAIMGTYSSLSKIAKSY 539

The following BLAST results are available for this feature:

BLAST of CmoCh06G000230.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G000230.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBQ3_CUCSA	8.2e-41	76.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G820510 PE=4 SV=1	[more]
W9QTY5_9ROSA	2.7e-36	78.07	Uncharacterized protein OS=Morus notabilis GN=L484_013934 PE=4 SV=1	[more]
V4MJN3_EUTSA	1.5e-34	69.57	Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10016504mg PE=4 SV=1	[more]
O80668_ARATH	1.5e-34	69.57	Expressed protein OS=Arabidopsis thaliana GN=At2g41190 PE=2 SV=2	[more]
Q8H139_ARATH	1.5e-34	69.57	Putative uncharacterized protein At2g41190 (Fragment) OS=Arabidopsis thaliana GN...	[more]

BLAST of CmoCh06G000230.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41190.1	7.6e-38	69.57	Transmembrane amino acid transporter family protein	[more]
AT2G39130.1	1.2e-19	46.90	Transmembrane amino acid transporter family protein	[more]
AT5G02180.1	1.9e-17	45.61	Transmembrane amino acid transporter family protein	[more]
AT5G02170.1	1.0e-13	39.13	Transmembrane amino acid transporter family protein	[more]
AT3G09330.1	2.9e-13	39.47	Transmembrane amino acid transporter family protein	[more]

BLAST of CmoCh06G000230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204312\|gb\|KGN59445.1\|	1.2e-40	76.80	hypothetical protein Csa_3G820510 [Cucumis sativus]	[more]
gi\|659085131\|ref\|XP_008443262.1\|	3.5e-37	75.65	PREDICTED: vacuolar amino acid transporter 1-like isoform X1 [Cucumis melo]	[more]
gi\|731400499\|ref\|XP_010653971.1\|	3.5e-37	75.65	PREDICTED: vacuolar amino acid transporter 1 isoform X1 [Vitis vinifera]	[more]
gi\|731400501\|ref\|XP_010653972.1\|	3.5e-37	75.65	PREDICTED: vacuolar amino acid transporter 1 isoform X2 [Vitis vinifera]	[more]
gi\|778685205\|ref\|XP_011652187.1\|	1.0e-36	75.65	PREDICTED: vacuolar amino acid transporter 1 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013057	AA_transpt_TM

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh06G000230	CmoCh06G000230	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000230.1	CmoCh06G000230.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000230.1.three_prime_UTR.1	CmoCh06G000230.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000230.1.CDS.4	CmoCh06G000230.1.CDS.4	CDS
CmoCh06G000230.1.CDS.3	CmoCh06G000230.1.CDS.3	CDS
CmoCh06G000230.1.CDS.2	CmoCh06G000230.1.CDS.2	CDS
CmoCh06G000230.1.CDS.1	CmoCh06G000230.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh06G000230.1.exon.4	CmoCh06G000230.1.exon.4	exon
CmoCh06G000230.1.exon.3	CmoCh06G000230.1.exon.3	exon
CmoCh06G000230.1.exon.2	CmoCh06G000230.1.exon.2	exon
CmoCh06G000230.1.exon.1	CmoCh06G000230.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013057	Amino acid transporter, transmembrane domain	PFAM	PF01490	Aa_trans	coord: 4..117 score: 1.5
None	No IPR available	PANTHER	PTHR22950	AMINO ACID TRANSPORTER	coord: 9..125 score: 4.7
None	No IPR available	PANTHER	PTHR22950:SF269	EXPRESSED PROTEIN	coord: 9..125 score: 4.7