CmoCh05G008970.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G008970.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Ribonuclease T2 family protein) (S7-RNase)
Location	Cmo_Chr05 : 6213347 .. 6213936 (+)
Sequence length	480

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATCCCAAACATAGTCTTCCTCTGGTTTGTTAGTGTCATTTTGCTTCCAATAGCTAAATCACAGCTTTTTGACACTTTCAGTTTGTTCAGCAGTGGTCTTATAATTTTTGTGCATTGCAATCAGGACTATGTGTAGGAGGAGGGATAAATTCCTTCACAATCCATGACTTGTGGCCTCAGAAGGGAAGAAACTCGGTAACTAAGTATCGGGGCACCTCCTTTATTTATAAACAGGTAAAACTCAAACATTCATTTATCTTAATTCAGTTTATTAGATGTGCAAATTATAACTAGTTCATTATGTTTGGATTTCAGCTTTTGTATTTAGAAAACGATCTAGTTTGGCCAGATCTGATCGAGGAAAAGAACCCATCGGTTTGGACTCATGAATGGAAAAAACATGGGATTTGCTCAGAAACCAAATTCGACGAGGTAGCCTACTTCCAAACATCCATCCATTTGAGGCACTTAGTTCCAGACAGGGTCTCCAAGTCAAAGCAAAGTGTGGACAGCGCCGTCATAAAGCATTTCAAGGAAATCTTGTTCTTCGTTGTCAAAAAGCATCCAACGGCCCAATCCTATTGA

mRNA sequence

ATGTCAATCCCAAACATAGTCTTCCTCTGGTTTGTTAGTGTCATTTTGCTTCCAATAGCTAAATCACAGCTTTTTGACACTTTCAGTTTGTTCAGCAGTGGACTATGTGTAGGAGGAGGGATAAATTCCTTCACAATCCATGACTTGTGGCCTCAGAAGGGAAGAAACTCGGTAACTAAGTATCGGGGCACCTCCTTTATTTATAAACAGCTTTTGTATTTAGAAAACGATCTAGTTTGGCCAGATCTGATCGAGGAAAAGAACCCATCGGTTTGGACTCATGAATGGAAAAAACATGGGATTTGCTCAGAAACCAAATTCGACGAGGTAGCCTACTTCCAAACATCCATCCATTTGAGGCACTTAGTTCCAGACAGGGTCTCCAAGTCAAAGCAAAGTGTGGACAGCGCCGTCATAAAGCATTTCAAGGAAATCTTGTTCTTCGTTGTCAAAAAGCATCCAACGGCCCAATCCTATTGA

Coding sequence (CDS)

ATGTCAATCCCAAACATAGTCTTCCTCTGGTTTGTTAGTGTCATTTTGCTTCCAATAGCTAAATCACAGCTTTTTGACACTTTCAGTTTGTTCAGCAGTGGACTATGTGTAGGAGGAGGGATAAATTCCTTCACAATCCATGACTTGTGGCCTCAGAAGGGAAGAAACTCGGTAACTAAGTATCGGGGCACCTCCTTTATTTATAAACAGCTTTTGTATTTAGAAAACGATCTAGTTTGGCCAGATCTGATCGAGGAAAAGAACCCATCGGTTTGGACTCATGAATGGAAAAAACATGGGATTTGCTCAGAAACCAAATTCGACGAGGTAGCCTACTTCCAAACATCCATCCATTTGAGGCACTTAGTTCCAGACAGGGTCTCCAAGTCAAAGCAAAGTGTGGACAGCGCCGTCATAAAGCATTTCAAGGAAATCTTGTTCTTCGTTGTCAAAAAGCATCCAACGGCCCAATCCTATTGA

Homology

[Close]

BLAST of CmoCh05G008970.1 vs. Swiss-Prot
Match: RNMC_MOMCH (Ribonuclease MC OS=Momordica charantia PE=1 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 2.3e-17
Identity = 38/96 (39.58%), Postives = 61/96 (63.54%), Query Frame = 1


Query: 29  SLFSSGLCVGGGINSFTIHDLWPQKGRNSVTKY-RGTSFIYKQLLYLENDL--VWPDLIE 88
           S   SG C G G+ +FTIH LWPQ    S+T   +G+ F   ++ +L++ L  +WP+++ 
Sbjct: 16  SFQKSGSCPGSGLRTFTIHGLWPQGSGTSLTNCPQGSPFDITKISHLQSQLNTLWPNVLR 75

Query: 89  EKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH 122
             N   W+HEW KHG CSE+ F++ AYF+ ++ +R+
Sbjct: 76  ANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRN 111

[Close]

BLAST of CmoCh05G008970.1 vs. Swiss-Prot
Match: RN28_PANGI (Ribonuclease-like storage protein OS=Panax ginseng PE=1 SV=2)

HSP 1 Score: 59.7 bits (143), Expect = 3.4e-08
Identity = 30/84 (35.71%), Postives = 43/84 (51.19%), Query Frame = 1


Query: 41  INSFTIHDLWPQKGRNSVTKY-RGTSFIYKQL--LYLENDLVWPDL-IEEKNPSVWTHEW 100
           +N+FTIH L+P   + +   Y  GT+F    +     E  L WP      ++   W HEW
Sbjct: 55  LNTFTIHGLYPYNAKGTPALYCDGTAFDVNSVSDFLAEMHLAWPSHETNTEDIQFWEHEW 114

Query: 101 KKHGICSETKFDEVAYFQTSIHLR 121
           KKHG CSE    +  YF+T++  R
Sbjct: 115 KKHGRCSEALLKQTDYFRTALAFR 138

[Close]

BLAST of CmoCh05G008970.1 vs. Swiss-Prot
Match: RNS3_PETHY (Ribonuclease S-3 OS=Petunia hybrida GN=S3 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-06
Identity = 27/89 (30.34%), Postives = 44/89 (49.44%), Query Frame = 1


Query: 42  NSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLEN----------DLVWPDLIEEKNPSV 101
           N+FTIH LWP+K R  +    G    YK+ L  +N           + + +        +
Sbjct: 49  NNFTIHGLWPEKKRFRLEFCTGDK--YKRFLEEDNIINVLERHWIQMRFDETYANTKQPL 108

Query: 102 WTHEWKKHGICSETKFDEVAYFQTSIHLR 121
           W HE+ +HGIC +  +D+ AYF  ++ L+
Sbjct: 109 WEHEYNRHGICCKNLYDQKAYFLLAMRLK 135

[Close]

BLAST of CmoCh05G008970.1 vs. Swiss-Prot
Match: RNS1_ARATH (Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.4e-06
Identity = 29/85 (34.12%), Postives = 41/85 (48.24%), Query Frame = 1


Query: 44  FTIHDLWPQ------KGRNSVTKYRGTSFIYKQLLYLENDLVWPDLI--EEKNPSVWTHE 103
           F IH LWP             +K   +S I   L  ++    WP L        + W HE
Sbjct: 62  FGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKS--WPTLACPSGSGEAFWEHE 121

Query: 104 WKKHGICSETKFDEVAYFQTSIHLR 121
           W+KHG CSE+  D+  YFQT+++L+
Sbjct: 122 WEKHGTCSESVIDQHEYFQTALNLK 144

[Close]

BLAST of CmoCh05G008970.1 vs. Swiss-Prot
Match: RNY1_EMENI (Ribonuclease T2-like OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rny1 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 7.0e-06
Identity = 30/107 (28.04%), Postives = 46/107 (42.99%), Query Frame = 1


Query: 39  GGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQLLYLENDLVWPDLIEE----------KN 98
           G  NS+TIH LWP        ++  +   Y  +  +  D    DL++E           +
Sbjct: 84  GPENSWTIHGLWPDHCNGGFDQFCDSHRKYSNISLILIDAGRRDLLDEMSTYWKDYRGDD 143

Query: 99  PSVWTHEWKKHGICSET-----------KFDEVAYFQTSIHLRHLVP 125
           P++W HEW KHG C  T           + + V YF  ++ L H +P
Sbjct: 144 PNLWEHEWNKHGTCVSTLETHCYSEYYPQQEVVDYFDKTVELFHDLP 190

[Close]

BLAST of CmoCh05G008970.1 vs. TrEMBL
Match: A0A0A0LC37_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825050 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 2.3e-32
Identity = 79/177 (44.63%), Postives = 99/177 (55.93%), Query Frame = 1


Query: 5   NIVFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKG 64
           ++VF  FV  IL PI KSQ FD F              SG CVG G  SFTIH LWPQKG
Sbjct: 8   DVVFFVFVLTILFPIVKSQTFDDFWFVQQWPPAVCTLQSGRCVGRGTRSFTIHGLWPQKG 67

Query: 65  RNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSVWTHEWKKHGICSETKFDEVAY 124
             SVT   G  F + ++ +LENDL  VWP+++   N   W HEW KHGICSE+KFDE  Y
Sbjct: 68  GRSVTNCTGNQFDFTKIAHLENDLNVVWPNVVTGNNKFFWGHEWNKHGICSESKFDEAKY 127

Query: 125 FQTSIHLRHLV------------PDRVSKSKQSVDSAVIKHFKEILFFVVKKHPTAQ 158
           FQT+I++RH +            P+  SK+KQ V++A+  HF +      KK    Q
Sbjct: 128 FQTAINMRHGIDLLSVLRTGGVGPNGASKAKQRVETAISSHFGKDPILRCKKASNGQ 184

[Close]

BLAST of CmoCh05G008970.1 vs. TrEMBL
Match: Q40115_LUFAE (Ribonuclease (RNase LC1) OS=Luffa aegyptiaca PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 6.1e-25
Identity = 66/156 (42.31%), Postives = 91/156 (58.33%), Query Frame = 1


Query: 7   VFLWFVSVILLPIAKSQLFDTFSL----------FSSGLCVGGGINSFTIHDLWPQKGRN 66
           + L FV  IL P+ KSQ FD+F +          F  G CVG G+ SFTIH +WPQKG  
Sbjct: 8   IVLVFVLTILFPMVKSQTFDSFWMVQHWPPAVCSFQQGRCVGQGLRSFTIHGVWPQKGGT 67

Query: 67  SVTKYRGTSFIYKQLLYLENDLV--WPDLIEEKNPSVWTHEWKKHGICSETKFDEVAYFQ 126
           SV    G +F + ++ +LE+ L   WP++I   N   W HEW KHGICS +KFD+ AYFQ
Sbjct: 68  SVINCPGPTFDFTKISHLESTLNVDWPNVITGNNKWFWGHEWNKHGICSVSKFDQQAYFQ 127

Query: 127 TSIHLRH------------LVPDRVSKSKQSVDSAV 139
            +I++R+            +VP+  SK++Q V SA+
Sbjct: 128 MAINMRNSIDLLSALRVGGVVPNGRSKARQRVQSAI 163

[Close]

BLAST of CmoCh05G008970.1 vs. TrEMBL
Match: A0A0A0LHQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825060 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.7e-20
Identity = 63/180 (35.00%), Postives = 92/180 (51.11%), Query Frame = 1


Query: 5   NIVFLWFV--SVILLPIAKSQLFDTFSLFS----------SGLCVGGGINSFTIHDLWPQ 64
           NIV L+ V  S+ L PI KSQ FD F              +G CVG G+  FTIH +WPQ
Sbjct: 10  NIVLLFVVTLSISLFPIMKSQQFDKFYFVQQWPPAVCDGRTGKCVGKGMYYFTIHGVWPQ 69

Query: 65  KGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSVWTHEWKKHGICSETKFDEV 124
           KG  SV    GT F + ++  L N L  +  D+I   +  +W+HEW KHG+CSE+++   
Sbjct: 70  KGGKSVINCPGTQFDFNKISSLANTLHQIMKDVINADDQFLWSHEWNKHGVCSESRYSMK 129

Query: 125 AYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFKEILFFVVKKHPTAQS 159
            YFQ +I++++            + P+   K+KQ V+ A+   +        KK  + QS
Sbjct: 130 QYFQMAINMKYKINVLSALRMGGITPNNHLKAKQRVEGAMFTAYNAYPLLRCKKDSSGQS 189

[Close]

BLAST of CmoCh05G008970.1 vs. TrEMBL
Match: Q40116_LUFAE (Ribonuclease (RNase LC2) OS=Luffa aegyptiaca PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-15
Identity = 61/174 (35.06%), Postives = 83/174 (47.70%), Query Frame = 1


Query: 7   VFLWFVSVILLPI----AKSQLFDTFSLFSSGL----------CVGGGINSFTIHDLWPQ 66
           V L    V+LL I    A+SQ FD F                 C      +F IH LWPQ
Sbjct: 5   VLLLATIVLLLTILFLGAESQTFDHFFFVQQWPPTTCQQQQKPCFQPPPATFKIHGLWPQ 64

Query: 67  KGRNSVTKYRGTSFIYKQLLYLEN--DLVWPDLIEEKNPSVWTHEWKKHGICSETKFDEV 126
           KG NSV  Y   +F   Q+  LEN  D+VWPD++   N   W HEW KHG CSE++F++ 
Sbjct: 65  KGPNSVV-YCNKNFDRTQISSLENQLDVVWPDVVTGNNTGFWEHEWNKHGSCSESQFNQT 124

Query: 127 AYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFKEILFFVVKK 153
            YFQT+I++ +            +  D  +KS Q++   ++  F    F   KK
Sbjct: 125 LYFQTAINMMNKVNLLKALGKGGITSDERTKSSQTMQKVLLAQFGNQPFLRCKK 177

[Close]

BLAST of CmoCh05G008970.1 vs. TrEMBL
Match: A0A068V6I9_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017349001 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.2e-09
Identity = 33/93 (35.48%), Postives = 47/93 (50.54%), Query Frame = 1


Query: 42  NSFTIHDLWPQKGRNSVTKYRGTSF--IYKQLLYLENDLVWPDLIEEKNP---------- 101
           N FTIH LWP     +V   + T F  I  +  + + D +WPDL + +            
Sbjct: 50  NDFTIHGLWPANHTGTVENCKKTGFAPIQDENKFKQLDSIWPDLDQPRPEYDTVGSRVLA 109

Query: 102 -SVWTHEWKKHGICSETKFDEVAYFQTSIHLRH 122
            S W HEWKKHG CSE  +++  YF  +I L++
Sbjct: 110 QSFWGHEWKKHGTCSENMYNQTQYFDLAIKLKN 142

[Close]

BLAST of CmoCh05G008970.1 vs. TAIR10
Match: AT1G14210.1 (AT1G14210.1 Ribonuclease T2 family protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 31/96 (32.29%), Postives = 44/96 (45.83%), Query Frame = 1


Query: 38  GGGINSFTIHDLWPQKGRNS------VTKYRGTSFIYKQLLYLENDL----VWPDLIEEK 97
           G   + F IH LWPQ    +       T     S I   +  +E       VW     E 
Sbjct: 52  GNTASDFIIHGLWPQFNNGTWPAFCDQTNLFDISKISDLVCQMEKKWTEWGVWACPSNET 111

Query: 98  NPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRHLV 124
           N  +W HEW KHG C ++ FD+ +YF+T++  +H V
Sbjct: 112 N--LWEHEWNKHGTCVQSIFDQHSYFRTNLKFKHKV 145

[Close]

BLAST of CmoCh05G008970.1 vs. TAIR10
Match: AT2G02990.1 (AT2G02990.1 ribonuclease 1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 29/85 (34.12%), Postives = 41/85 (48.24%), Query Frame = 1


Query: 44  FTIHDLWPQ------KGRNSVTKYRGTSFIYKQLLYLENDLVWPDLI--EEKNPSVWTHE 103
           F IH LWP             +K   +S I   L  ++    WP L        + W HE
Sbjct: 62  FGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKS--WPTLACPSGSGEAFWEHE 121

Query: 104 WKKHGICSETKFDEVAYFQTSIHLR 121
           W+KHG CSE+  D+  YFQT+++L+
Sbjct: 122 WEKHGTCSESVIDQHEYFQTALNLK 144

[Close]

BLAST of CmoCh05G008970.1 vs. TAIR10
Match: AT1G26820.1 (AT1G26820.1 ribonuclease 3)

HSP 1 Score: 51.6 bits (122), Expect = 5.2e-07
Identity = 28/83 (33.73%), Postives = 40/83 (48.19%), Query Frame = 1


Query: 44  FTIHDLWPQKGRNSVTKYRGTSFIYKQLLY--LENDLV--WPDLIEEKNPSV--WTHEWK 103
           F IH LWP        +       +  L    L +DL   WP L    N  +  WTHEW+
Sbjct: 54  FGIHGLWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWPTLSCPSNDGMKFWTHEWE 113

Query: 104 KHGICSETKFDEVAYFQTSIHLR 121
           KHG C+E++ D+  YF+  + L+
Sbjct: 114 KHGTCAESELDQHDYFEAGLKLK 136

[Close]

BLAST of CmoCh05G008970.1 vs. TAIR10
Match: AT1G14220.1 (AT1G14220.1 Ribonuclease T2 family protein)

HSP 1 Score: 51.6 bits (122), Expect = 5.2e-07
Identity = 29/83 (34.94%), Postives = 40/83 (48.19%), Query Frame = 1


Query: 44  FTIHDLWPQKGRNSVTKY--RGTSFIYKQLLYLENDLV--WPDLIEEKNP--SVWTHEWK 103
           F IH LWP     S        + F   Q+  L + L   WP L    N   + W HEW+
Sbjct: 60  FGIHGLWPNYNGGSWPSNCDPDSQFDRSQISDLVSSLKKNWPTLSCPSNEGFNFWEHEWE 119

Query: 104 KHGICSETKFDEVAYFQTSIHLR 121
           KHG CSE+  D+  YF+ ++ L+
Sbjct: 120 KHGTCSESVMDQHEYFENALKLK 142

[Close]

BLAST of CmoCh05G008970.1 vs. NCBI nr
Match: gi|659085407|ref|XP_008443402.1| (PREDICTED: ribonuclease MC-like [Cucumis melo])

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-32
Identity = 76/162 (46.91%), Postives = 97/162 (59.88%), Query Frame = 1


Query: 5   NIVFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKG 64
           ++VF  FV  IL PI KSQ FD F              SG CVG G  SFTIH LWPQKG
Sbjct: 7   DVVFFVFVLTILFPIVKSQTFDNFWFVQQWPPAICTLQSGRCVGRGTRSFTIHGLWPQKG 66

Query: 65  RNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSVWTHEWKKHGICSETKFDEVAY 124
             SVT   G SF + ++ +LE+DL  VWP+++   N   W HEW KHGICSE+KFD+  Y
Sbjct: 67  GRSVTNCSGNSFDFTKIAHLESDLNVVWPNVVTGNNKFFWGHEWNKHGICSESKFDQAKY 126

Query: 125 FQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHF 143
           FQT+I++RH            +VP+  SK+KQ V++A+  HF
Sbjct: 127 FQTAINMRHSIDLLSVLRTGGIVPNGASKAKQRVETAISSHF 168

[Close]

BLAST of CmoCh05G008970.1 vs. NCBI nr
Match: gi|449459530|ref|XP_004147499.1| (PREDICTED: ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 3.3e-32
Identity = 79/177 (44.63%), Postives = 99/177 (55.93%), Query Frame = 1


Query: 5   NIVFLWFVSVILLPIAKSQLFDTF----------SLFSSGLCVGGGINSFTIHDLWPQKG 64
           ++VF  FV  IL PI KSQ FD F              SG CVG G  SFTIH LWPQKG
Sbjct: 8   DVVFFVFVLTILFPIVKSQTFDDFWFVQQWPPAVCTLQSGRCVGRGTRSFTIHGLWPQKG 67

Query: 65  RNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSVWTHEWKKHGICSETKFDEVAY 124
             SVT   G  F + ++ +LENDL  VWP+++   N   W HEW KHGICSE+KFDE  Y
Sbjct: 68  GRSVTNCTGNQFDFTKIAHLENDLNVVWPNVVTGNNKFFWGHEWNKHGICSESKFDEAKY 127

Query: 125 FQTSIHLRHLV------------PDRVSKSKQSVDSAVIKHFKEILFFVVKKHPTAQ 158
           FQT+I++RH +            P+  SK+KQ V++A+  HF +      KK    Q
Sbjct: 128 FQTAINMRHGIDLLSVLRTGGVGPNGASKAKQRVETAISSHFGKDPILRCKKASNGQ 184

[Close]

BLAST of CmoCh05G008970.1 vs. NCBI nr
Match: gi|976231|dbj|BAA10891.1| (ribonuclease (RNase LC1) [Luffa aegyptiaca])

HSP 1 Score: 122.1 bits (305), Expect = 8.8e-25
Identity = 66/156 (42.31%), Postives = 91/156 (58.33%), Query Frame = 1


Query: 7   VFLWFVSVILLPIAKSQLFDTFSL----------FSSGLCVGGGINSFTIHDLWPQKGRN 66
           + L FV  IL P+ KSQ FD+F +          F  G CVG G+ SFTIH +WPQKG  
Sbjct: 8   IVLVFVLTILFPMVKSQTFDSFWMVQHWPPAVCSFQQGRCVGQGLRSFTIHGVWPQKGGT 67

Query: 67  SVTKYRGTSFIYKQLLYLENDLV--WPDLIEEKNPSVWTHEWKKHGICSETKFDEVAYFQ 126
           SV    G +F + ++ +LE+ L   WP++I   N   W HEW KHGICS +KFD+ AYFQ
Sbjct: 68  SVINCPGPTFDFTKISHLESTLNVDWPNVITGNNKWFWGHEWNKHGICSVSKFDQQAYFQ 127

Query: 127 TSIHLRH------------LVPDRVSKSKQSVDSAV 139
            +I++R+            +VP+  SK++Q V SA+
Sbjct: 128 MAINMRNSIDLLSALRVGGVVPNGRSKARQRVQSAI 163

[Close]

BLAST of CmoCh05G008970.1 vs. NCBI nr
Match: gi|700204428|gb|KGN59561.1| (hypothetical protein Csa_3G825060 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.8e-20
Identity = 63/180 (35.00%), Postives = 92/180 (51.11%), Query Frame = 1


Query: 5   NIVFLWFV--SVILLPIAKSQLFDTFSLFS----------SGLCVGGGINSFTIHDLWPQ 64
           NIV L+ V  S+ L PI KSQ FD F              +G CVG G+  FTIH +WPQ
Sbjct: 10  NIVLLFVVTLSISLFPIMKSQQFDKFYFVQQWPPAVCDGRTGKCVGKGMYYFTIHGVWPQ 69

Query: 65  KGRNSVTKYRGTSFIYKQLLYLENDL--VWPDLIEEKNPSVWTHEWKKHGICSETKFDEV 124
           KG  SV    GT F + ++  L N L  +  D+I   +  +W+HEW KHG+CSE+++   
Sbjct: 70  KGGKSVINCPGTQFDFNKISSLANTLHQIMKDVINADDQFLWSHEWNKHGVCSESRYSMK 129

Query: 125 AYFQTSIHLRH------------LVPDRVSKSKQSVDSAVIKHFKEILFFVVKKHPTAQS 159
            YFQ +I++++            + P+   K+KQ V+ A+   +        KK  + QS
Sbjct: 130 QYFQMAINMKYKINVLSALRMGGITPNNHLKAKQRVEGAMFTAYNAYPLLRCKKDSSGQS 189

[Close]

BLAST of CmoCh05G008970.1 vs. NCBI nr
Match: gi|778685547|ref|XP_004147497.2| (PREDICTED: ribonuclease MC-like [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 8.0e-18
Identity = 54/162 (33.33%), Postives = 81/162 (50.00%), Query Frame = 1


Query: 21  KSQLFDTFSLFS----------SGLCVGGGINSFTIHDLWPQKGRNSVTKYRGTSFIYKQ 80
           KSQ FD F              +G CVG G+  FTIH +WPQKG  SV    GT F + +
Sbjct: 2   KSQQFDKFYFVQQWPPAVCDGRTGKCVGKGMYYFTIHGVWPQKGGKSVINCPGTQFDFNK 61

Query: 81  LLYLENDL--VWPDLIEEKNPSVWTHEWKKHGICSETKFDEVAYFQTSIHLRH------- 140
           +  L N L  +  D+I   +  +W+HEW KHG+CSE+++    YFQ +I++++       
Sbjct: 62  ISSLANTLHQIMKDVINADDQFLWSHEWNKHGVCSESRYSMKQYFQMAINMKYKINVLSA 121

Query: 141 -----LVPDRVSKSKQSVDSAVIKHFKEILFFVVKKHPTAQS 159
                + P+   K+KQ V+ A+   +        KK  + QS
Sbjct: 122 LRMGGITPNNHLKAKQRVEGAMFTAYNAYPLLRCKKDSSGQS 163

The following BLAST results are available for this feature:

BLAST of CmoCh05G008970.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RNMC_MOMCH	2.3e-17	39.58	Ribonuclease MC OS=Momordica charantia PE=1 SV=1	[more]
RN28_PANGI	3.4e-08	35.71	Ribonuclease-like storage protein OS=Panax ginseng PE=1 SV=2	[more]
RNS3_PETHY	1.4e-06	30.34	Ribonuclease S-3 OS=Petunia hybrida GN=S3 PE=3 SV=1	[more]
RNS1_ARATH	2.4e-06	34.12	Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1	[more]
RNY1_EMENI	7.0e-06	28.04	Ribonuclease T2-like OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 1...	[more]

BLAST of CmoCh05G008970.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC37_CUCSA	2.3e-32	44.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825050 PE=3 SV=1	[more]
Q40115_LUFAE	6.1e-25	42.31	Ribonuclease (RNase LC1) OS=Luffa aegyptiaca PE=2 SV=1	[more]
A0A0A0LHQ9_CUCSA	2.7e-20	35.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G825060 PE=3 SV=1	[more]
Q40116_LUFAE	1.2e-15	35.06	Ribonuclease (RNase LC2) OS=Luffa aegyptiaca PE=2 SV=1	[more]
A0A068V6I9_COFCA	6.2e-09	35.48	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00017349001 PE=3 SV=1	[more]

BLAST of CmoCh05G008970.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14210.1	1.0e-07	32.29	Ribonuclease T2 family protein	[more]
AT2G02990.1	1.4e-07	34.12	ribonuclease 1	[more]
AT1G26820.1	5.2e-07	33.73	ribonuclease 3	[more]
AT1G14220.1	5.2e-07	34.94	Ribonuclease T2 family protein	[more]

BLAST of CmoCh05G008970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085407\|ref\|XP_008443402.1\|	1.5e-32	46.91	PREDICTED: ribonuclease MC-like [Cucumis melo]	[more]
gi\|449459530\|ref\|XP_004147499.1\|	3.3e-32	44.63	PREDICTED: ribonuclease MC-like [Cucumis sativus]	[more]
gi\|976231\|dbj\|BAA10891.1\|	8.8e-25	42.31	ribonuclease (RNase LC1) [Luffa aegyptiaca]	[more]
gi\|700204428\|gb\|KGN59561.1\|	3.8e-20	35.00	hypothetical protein Csa_3G825060 [Cucumis sativus]	[more]
gi\|778685547\|ref\|XP_004147497.2\|	8.0e-18	33.33	PREDICTED: ribonuclease MC-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001568	RNase_T2-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0033897	ribonuclease T2 activity

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh05G008970	CmoCh05G008970	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh05G008970.1	CmoCh05G008970.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G008970.1.exon.1	CmoCh05G008970.1.exon.1	exon
CmoCh05G008970.1.exon.2	CmoCh05G008970.1.exon.2	exon
CmoCh05G008970.1.exon.3	CmoCh05G008970.1.exon.3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G008970.1.CDS.1	CmoCh05G008970.1.CDS.1	CDS
CmoCh05G008970.1.CDS.2	CmoCh05G008970.1.CDS.2	CDS
CmoCh05G008970.1.CDS.3	CmoCh05G008970.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001568	Ribonuclease T2-like	GENE3D	G3DSA:3.90.730.10		coord: 39..120 score: 3.4
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 41..121 score: 6.5
IPR001568	Ribonuclease T2-like	unknown	SSF55895	Ribonuclease Rh-like	coord: 27..145 score: 5.5