CmoCh05G004090.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G004090.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc finger (Ran-binding) family protein
Location	Cmo_Chr05 : 1872280 .. 1873518 (-)
Sequence length	1035

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAAAAAAAAAAAAGAAAAAGAAAAACCCCAAACTGCCACTGAAAGCCCAAACCTCGTTTGATTCTTCTCGATCCTCGAGAAAAAAAAAGGACAAAAATCGCAGTTCACCGGTATAAAACCCACCACCACCGGCTGTTTCGCCAGAGAAACGTGATCAGGCCATTAAAACCGAACCGCCGCCGCATCAACTTCAGGCAAAAGGTAAGCTTTCCGGTTAATTAGAGTTCATTTTGTTTTTTTTGGCGTTAAGGGTTGGGACTAAATTTGGAGGGGAATAAAAAGAAGCAGGATGAGCAGGCCGGGGGATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGTGAGCCTAGGGCCGACTTCAGCGGCGGAAGAGTTGGTTCCTCGTCCTTTGGTTTCACTACCGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCTTCTAAAGATGACGCTTCCCCTGCCGCCGCCGCCGCCGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGGTAGGGTTTCCAATTTTTCTCTAAATTCCATTTTCATCCCCACCACTTTCAATATTTTCAAATTTAGTCCATTTTTAATTATGATTTTAATTTTTTCATCCCATATCTACTAAATTAATCTATAAAAAAAAAGTCAAAAATTAATGTTACAGATCAAATTGCAACGAGCATAACTTTGCCAACAGAAGAGAATGCTTCAGATGTAATGCACCTAGAGATTCAAACAACACGTCTCCATACTCGTACTCGTAGAGGTAATTAATTAATTTCTAGAAACAAAATATCATATTTATAAATGGATCCCTAAACTCTTTCTCGGGTTTAATTAGTTATTAATATTATTATTTTGGGAATATTTTGCAATTTACAGGTGGTAGCAATGGAAGGATCAAATTCTAGCTAGAAAGAAGAGAGTTTCCAATCAGAACGTCGTCGTTTTGTTTTCTTTATTTTCCAGTTTCAAAAGTGATTTAAGGGTGGATTTATGCATGCATGCAGGAAAATACTTCGTATCCAATTTTCTAATTTATATTATATTAATCCGTAACTTTCACTTTATGTTATGTGCTTACC

mRNA sequence

AGAAAAAAAAAAAAAAGAAAAAGAAAAACCCCAAACTGCCACTGAAAGCCCAAACCTCGTTTGATTCTTCTCGATCCTCGAGAAAAAAAAAGGACAAAAATCGCAGTTCACCGGTATAAAACCCACCACCACCGGCTGTTTCGCCAGAGAAACGTGATCAGGCCATTAAAACCGAACCGCCGCCGCATCAACTTCAGGCAAAAGATGAGCAGGCCGGGGGATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGTGAGCCTAGGGCCGACTTCAGCGGCGGAAGAGTTGGTTCCTCGTCCTTTGGTTTCACTACCGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCTTCTAAAGATGACGCTTCCCCTGCCGCCGCCGCCGCCGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGGTAGGGTTTCCAATTTTTCTCTAAATTCCATTTTCATCCCCACCACTTTCAATATTTTCAAATTTAGTCCATTTTTAATTATGATTTTAATTTTTTCATCCCATATCTACTAAATTAATCTATAAAAAAAAAGTCAAAAATTAATGTTACAGATCAAATTGCAACGAGCATAACTTTGCCAACAGAAGAGAATGCTTCAGATGTAATGCACCTAGAGATTCAAACAACACGTCTCCATACTCGTACTCGTAGAGGTGGTAGCAATGGAAGGATCAAATTCTAGCTAGAAAGAAGAGAGTTTCCAATCAGAACGTCGTCGTTTTGTTTTCTTTATTTTCCAGTTTCAAAAGTGATTTAAGGGTGGATTTATGCATGCATGCAGGAAAATACTTCGTATCCAATTTTCTAATTTATATTATATTAATCCGTAACTTTCACTTTATGTTATGTGCTTACC

Coding sequence (CDS)

ATGAGCAGGCCGGGGGATTGGAATTGTAGGTCTTGCCACCATCTCAACTTCCAACGACGGGAGTCCTGTCAGCGTTGTGGTGAGCCTAGGGCCGACTTCAGCGGCGGAAGAGTTGGTTCCTCGTCCTTTGGTTTCACTACCGGCCCCGACGTCCGTCCTGGGGATTGGTACTGCGCCGTCGCCAACTGCGGCGCTCATAACTTCGCTAGCCGCTCTATCTGCTTCAAGTGCGGCGCTTCTAAAGATGACGCTTCCCCTGCCGCCGCCGCCGCCGCCGCCGCTTACGACGGCGATTTTACTAGAATGAGAGGCTTTAACTTCGGCGCTGCCTCCAACCGCCCTGGATGGAAATCTGGTGATTGGATCTGTTCCAGGTAG

Homology

[Close]

BLAST of CmoCh05G004090.1 vs. TrEMBL
Match: A0A0A0LLW7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380050 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.4e-56
Identity = 105/131 (80.15%), Postives = 111/131 (84.73%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVG------SSSFGFTTGPDVRPG 60
           MSRPGDWNCRSC+HLNFQRR+SCQRCG+PRADF GG  G      SSSFGFTTGPDVRPG
Sbjct: 81  MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 140

Query: 61  DWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNFGAASNRP 120
           DWYC VANCGAHNFASRSICFKCGA+KD+ S      AAAYDGD  RMRGFNFG ASNRP
Sbjct: 141 DWYCTVANCGAHNFASRSICFKCGATKDETS------AAAYDGDLPRMRGFNFGGASNRP 200

Query: 121 GWKSGDWICSR 126
           GWKSGDWIC+R
Sbjct: 201 GWKSGDWICAR 205

[Close]

BLAST of CmoCh05G004090.1 vs. TrEMBL
Match: V7AXS5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G094900g PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 5.3e-48
Identity = 95/130 (73.08%), Postives = 104/130 (80.00%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSGG--RVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ GG    GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGGFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNFGAASN-RPG 120
           YC V NCGAHNFASRS CFKCG SK+D+S        +YD D TRMR F FG  S+ RPG
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS------TGSYDVDITRMRPFGFGGGSSARPG 120

Query: 121 WKSGDWICSR 126
           WKSGDWIC+R
Sbjct: 121 WKSGDWICTR 124

[Close]

BLAST of CmoCh05G004090.1 vs. TrEMBL
Match: A0A0S3RC49_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G083200 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-47
Identity = 94/130 (72.31%), Postives = 104/130 (80.00%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSG--GRVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNF-GAASNRPG 120
           YC V NCGAHNFASRS CFKCG SK+D+S        +YD D TRMR + F G +S RPG
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS------TGSYDVDITRMRPYGFGGGSSTRPG 120

Query: 121 WKSGDWICSR 126
           WKSGDWIC+R
Sbjct: 121 WKSGDWICTR 124

[Close]

BLAST of CmoCh05G004090.1 vs. TrEMBL
Match: A0A0L9UHF7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g216200 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.2e-47
Identity = 94/130 (72.31%), Postives = 104/130 (80.00%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSG--GRVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNF-GAASNRPG 120
           YC V NCGAHNFASRS CFKCG SK+D+S        +YD D TRMR + F G +S RPG
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS------TGSYDVDITRMRPYGFGGGSSTRPG 120

Query: 121 WKSGDWICSR 126
           WKSGDWIC+R
Sbjct: 121 WKSGDWICTR 124

[Close]

BLAST of CmoCh05G004090.1 vs. TrEMBL
Match: I1JUE6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G068400 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 5.9e-47
Identity = 94/134 (70.15%), Postives = 103/134 (76.87%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRAD--------FSGGRVGSSSFGFTTGPDVR 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+         F GGR GSSSFGFTTGPDVR
Sbjct: 13  MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGGGDYGGGFGGGR-GSSSFGFTTGPDVR 72

Query: 61  PGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNFGAASN 120
           PGDWYC V NCGAHNFASRS CFKCGA K+D+S      A  +D D  RMR + FG  S+
Sbjct: 73  PGDWYCTVGNCGAHNFASRSSCFKCGAPKEDSS------AGPFDADMPRMRPYGFGGGSS 132

Query: 121 -RPGWKSGDWICSR 126
            RPGWKSGDWIC+R
Sbjct: 133 ARPGWKSGDWICTR 139

[Close]

BLAST of CmoCh05G004090.1 vs. TAIR10
Match: AT5G25490.1 (AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 160.6 bits (405), Expect = 6.2e-40
Identity = 83/141 (58.87%), Postives = 96/141 (68.09%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--------DFSGGRVGSSSFGFTTGPDVR 60
           M+RPGDWNCR C HLNFQRR+SCQRC EPR            GGR  SSSFGF TGPDVR
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPRPGGISTDLLSGFGGRPVSSSFGFNTGPDVR 60

Query: 61  PGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAY-DGDFTRMRG-FNFGAA 120
           PGDWYC + +CG HNFA+RS CFKCGA+KD+ S ++AAA   + D +    RG F FG +
Sbjct: 61  PGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMDMNVGPRRGLFGFGGS 120

Query: 121 SN------RPGWKSGDWICSR 126
           S+      R  WKSGDWIC R
Sbjct: 121 SSGGGGTGRSPWKSGDWICPR 141

[Close]

BLAST of CmoCh05G004090.1 vs. TAIR10
Match: AT3G15680.1 (AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 157.1 bits (396), Expect = 6.9e-39
Identity = 81/139 (58.27%), Postives = 88/139 (63.31%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--------DFS--GGRVGSSSFGFTTGPD 60
           MSRPGDWNCRSC HLNFQRR+SCQRCG+ R+        DF   GGR   S+FGFTTG D
Sbjct: 1   MSRPGDWNCRSCSHLNFQRRDSCQRCGDSRSGPGGVGGLDFGNFGGRA-MSAFGFTTGSD 60

Query: 61  VRPGDWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAA----AAYDGDFTRMRGFN 120
           VRPGDWYC V NCG HNFASRS CFKCG  KD+             A +D D  R R   
Sbjct: 61  VRPGDWYCTVGNCGTHNFASRSTCFKCGTFKDETGAGGGGGGIGGPAMFDADIMRSRVPG 120

Query: 121 FGAASNRPGWKSGDWICSR 126
            G    R  WKSGDWIC+R
Sbjct: 121 NG---GRSSWKSGDWICTR 135

[Close]

BLAST of CmoCh05G004090.1 vs. TAIR10
Match: AT2G26695.1 (AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-22
Identity = 52/122 (42.62%), Postives = 69/122 (56.56%), Query Frame = 1


Query: 5   GDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVANCG 64
           GDW C +C H NF++RESCQ+CG P+  F G  V +  +  T   +V  GDWYC   NCG
Sbjct: 6   GDWLCGACQHANFKKRESCQKCGYPK--FGGVDVSTYLYNRT---EVMAGDWYCGALNCG 65

Query: 65  AHNFASRSICFKCGASK-DDASPAAAAAAAAYDGDFTRMRGFNFGAASNRPGWKSGDWIC 124
           +HN+ASR+ C++CG  K +       A   AY  D           A+  PGWK+GDW+C
Sbjct: 66  SHNYASRTSCYRCGMIKVEYTEQYYGAQMVAYGND----------GAACPPGWKTGDWVC 112

Query: 125 SR 126
            R
Sbjct: 126 PR 112

[Close]

BLAST of CmoCh05G004090.1 vs. TAIR10
Match: AT2G17975.1 (AT2G17975.1 zinc finger (Ran-binding) family protein)

HSP 1 Score: 64.7 bits (156), Expect = 4.6e-11
Identity = 47/139 (33.81%), Postives = 61/139 (43.88%), Query Frame = 1


Query: 3   RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVAN 62
           R GDW C  C + N+  R  C RC +PR         +S +        R GDW C    
Sbjct: 5   REGDWECLGCRNRNYAFRSFCNRCKQPRLIMDNNTSPNSKW------LPRIGDWIC--TG 64

Query: 63  CGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNFGAAS-NRPG------ 122
           C  +N+ASR  C KCG SK+ A+ +A A   A     T +  F  G  S ++PG      
Sbjct: 65  CTNNNYASREKCKKCGQSKEVAALSALAIPGA--SLQTHLHYFTRGPESHDQPGSLLAFS 124

Query: 123 -----------WKSGDWIC 124
                      W+SGDWIC
Sbjct: 125 NATNQASVHKEWRSGDWIC 133

[Close]

BLAST of CmoCh05G004090.1 vs. TAIR10
Match: AT1G48570.1 (AT1G48570.1 zinc finger (Ran-binding) family protein)

HSP 1 Score: 47.4 bits (111), Expect = 7.7e-06
Identity = 25/75 (33.33%), Postives = 32/75 (42.67%), Query Frame = 1


Query: 3   RPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVGSSSFGFTTGPDVRPGDWYCAVAN 62
           + GDW C  C  LNF R +SC +C            G          +++ GDW C    
Sbjct: 336 KEGDWLCPECSFLNFTRNQSCLKCKAK---------GPKKTSMVNIVEMKKGDWNC--TG 395

Query: 63  CGAHNFASRSICFKC 78
           CG  NFAS   C +C
Sbjct: 396 CGYMNFASNKQCREC 399

[Close]

BLAST of CmoCh05G004090.1 vs. NCBI nr
Match: gi|449441928|ref|XP_004138734.1| (PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-56
Identity = 105/131 (80.15%), Postives = 111/131 (84.73%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVG------SSSFGFTTGPDVRPG 60
           MSRPGDWNCRSC+HLNFQRR+SCQRCG+PRADF GG  G      SSSFGFTTGPDVRPG
Sbjct: 1   MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 60

Query: 61  DWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNFGAASNRP 120
           DWYC VANCGAHNFASRSICFKCGA+KD+ S      AAAYDGD  RMRGFNFG ASNRP
Sbjct: 61  DWYCTVANCGAHNFASRSICFKCGATKDETS------AAAYDGDLPRMRGFNFGGASNRP 120

Query: 121 GWKSGDWICSR 126
           GWKSGDWIC+R
Sbjct: 121 GWKSGDWICAR 125

[Close]

BLAST of CmoCh05G004090.1 vs. NCBI nr
Match: gi|700207806|gb|KGN62925.1| (hypothetical protein Csa_2G380050 [Cucumis sativus])

HSP 1 Score: 226.9 bits (577), Expect = 2.0e-56
Identity = 105/131 (80.15%), Postives = 111/131 (84.73%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRADFSGGRVG------SSSFGFTTGPDVRPG 60
           MSRPGDWNCRSC+HLNFQRR+SCQRCG+PRADF GG  G      SSSFGFTTGPDVRPG
Sbjct: 81  MSRPGDWNCRSCNHLNFQRRDSCQRCGDPRADFGGGSYGGGRVGGSSSFGFTTGPDVRPG 140

Query: 61  DWYCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNFGAASNRP 120
           DWYC VANCGAHNFASRSICFKCGA+KD+ S      AAAYDGD  RMRGFNFG ASNRP
Sbjct: 141 DWYCTVANCGAHNFASRSICFKCGATKDETS------AAAYDGDLPRMRGFNFGGASNRP 200

Query: 121 GWKSGDWICSR 126
           GWKSGDWIC+R
Sbjct: 201 GWKSGDWICAR 205

[Close]

BLAST of CmoCh05G004090.1 vs. NCBI nr
Match: gi|593279185|ref|XP_007137042.1| (hypothetical protein PHAVU_009G094900g [Phaseolus vulgaris])

HSP 1 Score: 198.4 bits (503), Expect = 7.6e-48
Identity = 95/130 (73.08%), Postives = 104/130 (80.00%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSGG--RVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ GG    GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGGFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNFGAASN-RPG 120
           YC V NCGAHNFASRS CFKCG SK+D+S        +YD D TRMR F FG  S+ RPG
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS------TGSYDVDITRMRPFGFGGGSSARPG 120

Query: 121 WKSGDWICSR 126
           WKSGDWIC+R
Sbjct: 121 WKSGDWICTR 124

[Close]

BLAST of CmoCh05G004090.1 vs. NCBI nr
Match: gi|950969071|ref|XP_014499728.1| (PREDICTED: transcription initiation factor TFIID subunit 15-like [Vigna radiata var. radiata])

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-47
Identity = 94/130 (72.31%), Postives = 105/130 (80.77%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSG--GRVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSAGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNFGAASN-RPG 120
           YC V NCGAHNFASRS CFKCG SK+D+S        +YD D TRMR + FG+ S+ RPG
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS------TGSYDLDITRMRPYGFGSGSSARPG 120

Query: 121 WKSGDWICSR 126
           WKSGDWIC+R
Sbjct: 121 WKSGDWICTR 124

[Close]

BLAST of CmoCh05G004090.1 vs. NCBI nr
Match: gi|920698739|gb|KOM41964.1| (hypothetical protein LR48_Vigan04g216200 [Vigna angularis])

HSP 1 Score: 197.2 bits (500), Expect = 1.7e-47
Identity = 94/130 (72.31%), Postives = 104/130 (80.00%), Query Frame = 1


Query: 1   MSRPGDWNCRSCHHLNFQRRESCQRCGEPRA--DFSG--GRVGSSSFGFTTGPDVRPGDW 60
           MSRPGDWNCR+C+HLNFQRRESCQRCGEPR+  D+ G  G  GSSSFGFTTGPDVRPGDW
Sbjct: 1   MSRPGDWNCRTCNHLNFQRRESCQRCGEPRSGGDYGGAFGGRGSSSFGFTTGPDVRPGDW 60

Query: 61  YCAVANCGAHNFASRSICFKCGASKDDASPAAAAAAAAYDGDFTRMRGFNF-GAASNRPG 120
           YC V NCGAHNFASRS CFKCG SK+D+S        +YD D TRMR + F G +S RPG
Sbjct: 61  YCTVGNCGAHNFASRSSCFKCGVSKEDSS------TGSYDVDITRMRPYGFGGGSSTRPG 120

Query: 121 WKSGDWICSR 126
           WKSGDWIC+R
Sbjct: 121 WKSGDWICTR 124

The following BLAST results are available for this feature:

BLAST of CmoCh05G004090.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh05G004090.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLW7_CUCSA	1.4e-56	80.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G380050 PE=4 SV=1	[more]
V7AXS5_PHAVU	5.3e-48	73.08	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G094900g PE=4 SV=1	[more]
A0A0S3RC49_PHAAN	1.2e-47	72.31	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G083200 PE=...	[more]
A0A0L9UHF7_PHAAN	1.2e-47	72.31	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g216200 PE=4 SV=1	[more]
I1JUE6_SOYBN	5.9e-47	70.15	Uncharacterized protein OS=Glycine max GN=GLYMA_04G068400 PE=4 SV=1	[more]

BLAST of CmoCh05G004090.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25490.1	6.2e-40	58.87	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT3G15680.1	6.9e-39	58.27	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G26695.1	2.6e-22	42.62	Ran BP2/NZF zinc finger-like superfamily protein	[more]
AT2G17975.1	4.6e-11	33.81	zinc finger (Ran-binding) family protein	[more]
AT1G48570.1	7.7e-06	33.33	zinc finger (Ran-binding) family protein	[more]

BLAST of CmoCh05G004090.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441928\|ref\|XP_004138734.1\|	2.0e-56	80.15	PREDICTED: uncharacterized RNA-binding protein C17H9.04c [Cucumis sativus]	[more]
gi\|700207806\|gb\|KGN62925.1\|	2.0e-56	80.15	hypothetical protein Csa_2G380050 [Cucumis sativus]	[more]
gi\|593279185\|ref\|XP_007137042.1\|	7.6e-48	73.08	hypothetical protein PHAVU_009G094900g [Phaseolus vulgaris]	[more]
gi\|950969071\|ref\|XP_014499728.1\|	1.7e-47	72.31	PREDICTED: transcription initiation factor TFIID subunit 15-like [Vigna radiata ...	[more]
gi\|920698739\|gb\|KOM41964.1\|	1.7e-47	72.31	hypothetical protein LR48_Vigan04g216200 [Vigna angularis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001876	Znf_RanBP2

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh05G004090	CmoCh05G004090	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh05G004090.1	CmoCh05G004090.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G004090.1.three_prime_UTR.2	CmoCh05G004090.1.three_prime_UTR.2	three_prime_UTR
CmoCh05G004090.1.three_prime_UTR.1	CmoCh05G004090.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G004090.1.CDS.1	CmoCh05G004090.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G004090.1.five_prime_UTR.1	CmoCh05G004090.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh05G004090.1.exon.3	CmoCh05G004090.1.exon.3	exon
CmoCh05G004090.1.exon.2	CmoCh05G004090.1.exon.2	exon
CmoCh05G004090.1.exon.1	CmoCh05G004090.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001876	Zinc finger, RanBP2-type	GENE3D	G3DSA:4.10.1060.10		coord: 48..83 score: 1.3E-15coord: 3..31 score: 3.3
IPR001876	Zinc finger, RanBP2-type	PFAM	PF00641	zf-RanBP	coord: 52..81 score: 3.3E-6coord: 3..30 score: 0
IPR001876	Zinc finger, RanBP2-type	SMART	SM00547	zf_4	coord: 54..80 score: 4.4E-7coord: 5..29 score: 2.
IPR001876	Zinc finger, RanBP2-type	PROSITE	PS01358	ZF_RANBP2_1	coord: 56..77 score: -coord: 7..26 scor
IPR001876	Zinc finger, RanBP2-type	PROFILE	PS50199	ZF_RANBP2_2	coord: 3..32 score: 9.857coord: 52..83 score: 10
IPR001876	Zinc finger, RanBP2-type	unknown	SSF90209	Ran binding protein zinc finger-like	coord: 2..32 score: 5.81E-9coord: 48..83 score: 2.98
None	No IPR available	PANTHER	PTHR23111	ZINC FINGER PROTEIN	coord: 1..125 score: 6.8
None	No IPR available	PANTHER	PTHR23111:SF21	SUBFAMILY NOT NAMED	coord: 1..125 score: 6.8