CmoCh05G004020.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATATGTTGGTGAAGGCATTGCAAACCAGACTCCAGAGAACCCTTCTACCACTGCTCTTTGTTTCTAGTTTCCCTGTTTCTCCTCAGTTCAAAATGGAGCCCTGCGGCTGTCCCAATACAAATGAGAAGAGTCGAGCAGCAATAGAAAATGAAACTGGTACTTCTAATCCTGTGGTAGTATACATTGATCGTATTCTTCAACAATCTGTTTCATCCTGTTCTTCCGACGGTACCATTTTCAAGGTTCCAGAACCTCTGCGCAGCATCAACCCAGAAGCTTATACGCCCAGTGCCATCTCTATCGGCCCTTTTCACTCCGATAGAAAAGATCTTAGAGCTAATTCACTCAAACCCATGTACCTTCAACACTTCCTTCATCTCAGCCATCTCTCCGTGAACAGGATTGTAGAAACAGTCCAGAGTTTGGAACAAAGAGCTCGCTGTTGTTACACAGAATCCATCGAGATGAGCAGCGATAAATTTGTGCAACTTCTAGTCTTGGATGCCTGTTTCGTGGTCATGCATCTCATCTGTTTGATGTACCCAAAGTTGGATACCCCAAAAGGGGCGAATTTATGGCAATCCTGGAATGAAATATTTCATGATCTGATGCTGCTTGAAAACCAGCTTCCCTTCTTCCTTCTCCAATCTTTATACCACCTCTTTGCCCCCTCTCTACCTTTACTGAAAGATGAGAGTTTCATTCAAATTGTTCATCGTTATTTCTCAGAACAGAATAATCCAGAGTTGTTTCTTATCGATGTCAAACTACTTTCGGCTGACAACGTGAATCATTTTGTCGATTTAGTAAGAATACGTAAAACTGAAATATTATTCGATGAAATGTTCATCAAACACATAGTTTGGCCACCGAGTGCCACCGAGCTTCACGAATGCGGCGTTATTTTCAAGAGGGAGAAGGAAATAAAATTTGATGACCAAGGTGGGTATCTACTACTGCCGTCAATCAACATAGACGACAGTTTTGAAAAGCGTGTGAGAAACATTATAGCTTATGAGCAATACCATAGTGAATTTGAGTTATGGAACAAGGTGAGAAACTTGGCTTTGATTATGACGTCGTTGGTCCAGTCAGACCAAGACGTGAAATTGCTGATTGAGGCAGGGATCATAGAGAACGAATTGGGTAGTATCAAAGGTGTTACCCAATTATTCAACAACCTCTTTAAGCACACCTACGTTGGAATCAACTACTACCATTCTGATTGCCAAAAAATGAAAGATTATTGCAAGCGCCGCCACCATCGTTGGATGACATCGTTGCGGCGCAACTATTTCAGCACGCCATGGCTCAGTGCTTCCACCATTGCAGCCATCCTCCTCCTTGCCCTCACTCTTACACAGACCATCGTGGCTGTACTCACTGAATTCAAAAAAAGTTCTTAATTGGATCCAATCTTAATGATGCTTTTCGGAGTTTAGATTTCAACTAGATCTGAGTTCGTTGGGAGTACACATTTTAACCGTTATGTTCAAGTTGGGTCTATTAAATTTATATTGAAAGCTTGTACCATTTTCAACTTTAAGTGACAACTCCTTCCATTTGGGTTCATAACTATGTGAAACAAAAACAAAAACAATTATAATCACAAATGAATAGAAGAAAAAAAAAAAACAACACTTTCTTCTTGCAGAGGAAAAAAAAAGTAAAGCTCTAGATTTTGTTTGTAACTACTTTAAAATTAGTAGATATTCTTTCTATAAATCTTTAATTTATTATCTTACATCAAAATTATAATTATTATTTATCCAATTTTGATCAAAATTAATTTATACCTCTGAGATTTAATGTTTTGTTAATGATGTTTGAGAAAAGAATGCTTATGAGTTAATTAATAATTAAAGTATTTTCAACCATTTTATTATATTATTTAATTTTTAATGGTAGTTAAAATATTTTATTTTATAAGTTAATTAAATGTTGTATATAGTAGAGTAAATGATATAAAATGAGATAAAGTATACTTTTTTTAATTTAATTTTTACTAATTTATACGTCTATGATAAATAAAATGCCTTCAATTTTAAGTTTTTGAATTTATTTAACCGTCAATATTAATTAATAGGTATAATATTTACACTCATGATTATTATGTTTGTATGCCTTCCATTTTAAGTTTTAATATGTCAAAGTTATATAAAAATAAAAATTAAAAAAAAATCTTCATTGATAATAATATTTATATTCATGATTATTATGTTTGTATTAATTTATGATAGTTAGGAAATTAAACATAATGGTAATATTTAATTAATAGTCAAGTGTAAGAATTTAAATATAATAATAATATATGTCAATAATTATTATTGAATTAGGTTTATTTCTATCGATGAAAAAAAAGTATTTTGATAAAATTTATACTAAAGCTTTAGTCAAATTGAAGTTTCAAATTCAAAAAGAAAGAAAACATAACGTTTTATTAAAAAATGCTTTTACAAATAATTATATGAAAATTCTTAGCACATGAGTATCACTTTTCAAAAATATTATATTACAAACCACGTGCCCTTAGAAGATTCCAGCTATCCGATACAGTATGATTAAGAAGATAAAGAGAATGTTTTATCGAGTAGAATGACAATGAGACATTAAGTTGGCCTCTAGCTAGCTGTAAACAAAGAATTAATAAATTTATTATGCACGACTACATTTAGAATAACCTTTTAAATTCTTTTTTTATCGTTACCACGGATAACATAAATAAATAAAGGGAAAAGAAACTTCATTTTAGGCCATATGCATGAAGTAACATAAAGAATAAATAGGTTTGTGCTTACTTCTCTTGCACTTCAAAATACATCACAAAAGATGAGGGGAACATAAAGAACCCCTCTCCCAAAATTTATTTATTTATTTATTTTATTTTTTACTGTCAAAAGCTATTGAATTGTATGTTAATTTCCTTTTTTTTCCTTTCTCATAAATGGGTATTTAAAATATAAATTCAATCTCTCAAAATTTATTTTTGTATCTAATAGATCCTTAAACTTCTGATTTAGTTAGTTTAAACCTTAAAAATGTCAAATAACTGTGTCCATGTGTCTAATAGATCTTTTGTATTTTTAACATTTTTTAAAAAAATTAATGGATCTACAATAAATTTTAAATTTGTGTCCAAATGAATAACCAATTTTTAAGATATAATAATTTAATACCAAAATTTTAATTAATTAATATTATTATTATGAAGTTGGATTGGATTAAATTCTCGTTTTAATACCAAAATTTTAATTAATTAGAGATAGGTTGACAATAAAAGTAATTTGAATCATCATCCAAAAATAGAAATTGAGGTTTAGTGAAAGTATATATTTTGAGTTATTTTATAGTAATAAAATAAAATAAAATAGTTGATCAAATTTTAACCTAAAGTATTAATATGATATGAGGGAAAGATGTTTATAAAGAGTTAGAATTAATTGGGTTGTTAAACCTACAAGTGATAAAGGGAAATAAGGCCAAACAAAGGGCAGCCTTCCACGTATTTGGATTTTCTAATTTTGTCACTTTAATAAAAGTGGGAATTTCTTTACTCCTTTTCCATTCTTGTTTCTCATACAACAAACCATGCAACTTTGTAAGCTAAGTATCCATAAATTAAATTATATATATCATTAATGACGTATCAATGGTTGAACGACTAAAATTTCTCGTCATCTTATTCTATTCGTTACAAATATATATATGCATTTTTTATATCCCGTCAATTTTACTATTAATATTCTCACATATTACAATGTTAATATTATTATTAAATCCTAGACTTTTATGTATTCCAACTAGATTTGGTGAACCAAATTAATATGAATTAAAATAGTCTATGAAGTGTGTCTATTTAATTCATAGACTAGTAAAAATTGGCATTAGTTTTTAAAATTCAGACAAAATTTAAAATTTTGAGTTTTATAATACATGAATTTATATTTATATTTAATAGAACAATTTTTTTTTAAGTGTACTAGACACGAAGTTATATTAGCGACCTATAAAATAGGTAATTGAAAATGTAAAGATTTCATATAGATACTAAACTCATAGCTTGACTATTTAAGTAATTGTCATTTGAGAGGGAGGAGAAACATAGGCTTGGGTTCTTATTTTCTTTCAAAAAGACTCTTCCTTTCTTCTCTCATTTTCGTTCCCCACCGACATCTTCTTTCATCAAGTCTGAGATAATTGAGAGGAATTTTGTAAGTATGATAGCATGAGAGATACAGTTGTAAACACTTTGGTTTTAGTGATTGACTACTACCTGTAGATGTAGGAGAATTTCTTTTCTTTTAACCATGTAAATCTTTGTGTCTCTTTGTTCATTTATGTTCGTGGGTAGGTGAGTACAATAGCTCTTGCTTCCACTTCCACTACAATGTGATCATTTATGTCAGGTCCATCGTAATATACCTTGGTTATCAAAAGCTAGTCTTCGTATTTCTTCCACTTCCAATACCTTTCTCTTCTTACTCCACAAATGTCTTATGA ATGAATATGTTGGTGAAGGCATTGCAAACCAGACTCCAGAGAACCCTTCTACCACTGCTCTTTGTTTCTAGTTTCCCTGTTTCTCCTCAGTTCAAAATGGAGCCCTGCGGCTGTCCCAATACAAATGAGAAGAGTCGAGCAGCAATAGAAAATGAAACTGGTACTTCTAATCCTGTGGTAGTATACATTGATCGTATTCTTCAACAATCTGTTTCATCCTGTTCTTCCGACGGTACCATTTTCAAGGTTCCAGAACCTCTGCGCAGCATCAACCCAGAAGCTTATACGCCCAGTGCCATCTCTATCGGCCCTTTTCACTCCGATAGAAAAGATCTTAGAGCTAATTCACTCAAACCCATGTACCTTCAACACTTCCTTCATCTCAGCCATCTCTCCGTGAACAGGATTGTAGAAACAGTCCAGAGTTTGGAACAAAGAGCTCGCTGTTGTTACACAGAATCCATCGAGATGAGCAGCGATAAATTTGTGCAACTTCTAGTCTTGGATGCCTGTTTCGTGGTCATGCATCTCATCTGTTTGATGTACCCAAAGTTGGATACCCCAAAAGGGGCGAATTTATGGCAATCCTGGAATGAAATATTTCATGATCTGATGCTGCTTGAAAACCAGCTTCCCTTCTTCCTTCTCCAATCTTTATACCACCTCTTTGCCCCCTCTCTACCTTTACTGAAAGATGAGAGTTTCATTCAAATTGTTCATCGTTATTTCTCAGAACAGAATAATCCAGAGTTGTTTCTTATCGATGTCAAACTACTTTCGGCTGACAACGTGAATCATTTTGTCGATTTAGTAAGAATACGTAAAACTGAAATATTATTCGATGAAATGTTCATCAAACACATAGTTTGGCCACCGAGTGCCACCGAGCTTCACGAATGCGGCGTTATTTTCAAGAGGGAGAAGGAAATAAAATTTGATGACCAAGGTGGGTATCTACTACTGCCGTCAATCAACATAGACGACAGTTTTGAAAAGCGTGTGAGAAACATTATAGCTTATGAGCAATACCATAGTGAATTTGAGTTATGGAACAAGGTGAGAAACTTGGCTTTGATTATGACGTCGTTGGTCCAGTCAGACCAAGACGTGAAATTGCTGATTGAGGCAGGGATCATAGAGAACGAATTGGGTAGTATCAAAGGTGTTACCCAATTATTCAACAACCTCTTTAAGCACACCTACGTTGGAATCAACTACTACCATTCTGATTGCCAAAAAATGAAAGATTATTGCAAGCGCCGCCACCATCGTTGGATGACATCGTTGCGGCGCAACTATTTCAGCACGCCATGGCTCAGTGCTTCCACCATTGCAGCCATCCTCCTCCTTGCCCTCACTCTTACACAGACCATCGTGGCTGTACTCACTGAATTCAAAAAAACACATGAGTATCACTTTTCAAAAATATTATATTACAAACCACGTGCCCTTAGAAGATTCCAGCTATCCGATACAGCCATATGCATGAAAGATAGGTTGACAATAAAACTTGACTATTTAAGTAATTGTCATTTGAGAGGGAGGAGAAACATAGGCTTGGGTTCTTATTTTCTTTCAAAAAGACTCTTCCTTTCTTCTCTCATTTTCGTTCCCCACCGACATCTTCTTTCATCAAGTCTGAGATAATTGAGAGGAATTTTGTAAGTATGATAGCATGAGAGATACAGTTGTAAACACTTTGGTTTTAGTGATTGACTACTACCTGTAGATGTAGGAGAATTTCTTTTCTTTTAACCATGTAAATCTTTGTGTCTCTTTGTTCATTTATGTTCGTGGGTAGGTGAGTACAATAGCTCTTGCTTCCACTTCCACTACAATGTGATCATTTATGTCAGGTCCATCGTAATATACCTTGGTTATCAAAAGCTAGTCTTCGTATTTCTTCCACTTCCAATACCTTTCTCTTCTTACTCCACAAATGTCTTATGA ATGAATATGTTGGTGAAGGCATTGCAAACCAGACTCCAGAGAACCCTTCTACCACTGCTCTTTGTTTCTAGTTTCCCTGTTTCTCCTCAGTTCAAAATGGAGCCCTGCGGCTGTCCCAATACAAATGAGAAGAGTCGAGCAGCAATAGAAAATGAAACTGGTACTTCTAATCCTGTGGTAGTATACATTGATCGTATTCTTCAACAATCTGTTTCATCCTGTTCTTCCGACGGTACCATTTTCAAGGTTCCAGAACCTCTGCGCAGCATCAACCCAGAAGCTTATACGCCCAGTGCCATCTCTATCGGCCCTTTTCACTCCGATAGAAAAGATCTTAGAGCTAATTCACTCAAACCCATGTACCTTCAACACTTCCTTCATCTCAGCCATCTCTCCGTGAACAGGATTGTAGAAACAGTCCAGAGTTTGGAACAAAGAGCTCGCTGTTGTTACACAGAATCCATCGAGATGAGCAGCGATAAATTTGTGCAACTTCTAGTCTTGGATGCCTGTTTCGTGGTCATGCATCTCATCTGTTTGATGTACCCAAAGTTGGATACCCCAAAAGGGGCGAATTTATGGCAATCCTGGAATGAAATATTTCATGATCTGATGCTGCTTGAAAACCAGCTTCCCTTCTTCCTTCTCCAATCTTTATACCACCTCTTTGCCCCCTCTCTACCTTTACTGAAAGATGAGAGTTTCATTCAAATTGTTCATCGTTATTTCTCAGAACAGAATAATCCAGAGTTGTTTCTTATCGATGTCAAACTACTTTCGGCTGACAACGTGAATCATTTTGTCGATTTAGTAAGAATACGTAAAACTGAAATATTATTCGATGAAATGTTCATCAAACACATAGTTTGGCCACCGAGTGCCACCGAGCTTCACGAATGCGGCGTTATTTTCAAGAGGGAGAAGGAAATAAAATTTGATGACCAAGGTGGGTATCTACTACTGCCGTCAATCAACATAGACGACAGTTTTGAAAAGCGTGTGAGAAACATTATAGCTTATGAGCAATACCATAGTGAATTTGAGTTATGGAACAAGGTGAGAAACTTGGCTTTGATTATGACGTCGTTGGTCCAGTCAGACCAAGACGTGAAATTGCTGATTGAGGCAGGGATCATAGAGAACGAATTGGGTAGTATCAAAGGTGTTACCCAATTATTCAACAACCTCTTTAAGCACACCTACGTTGGAATCAACTACTACCATTCTGATTGCCAAAAAATGAAAGATTATTGCAAGCGCCGCCACCATCGTTGGATGACATCGTTGCGGCGCAACTATTTCAGCACGCCATGGCTCAGTGCTTCCACCATTGCAGCCATCCTCCTCCTTGCCCTCACTCTTACACAGACCATCGTGGCTGTACTCACTGAATTCAAAAAAACACATGAGTATCACTTTTCAAAAATATTATATTACAAACCACGTGCCCTTAGAAGATTCCAGCTATCCGATACAGCCATATGCATGAAAGATAGGTTGACAATAAAACTTGACTATTTAAGTAATTGTCATTTGAGAGGGAGGAGAAACATAGGCTTGGGTTCTTATTTTCTTTCAAAAAGACTCTTCCTTTCTTCTCTCATTTTCGTTCCCCACCGACATCTTCTTTCATCAAGTCTGAGATAA
BLAST of CmoCh05G004020.1 vs. Swiss-Prot
Match: Y3720_ARATH (UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 6.8e-16 Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. Swiss-Prot
Match: Y3264_ARATH (Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana GN=At3g02645 PE=3 SV=1) HSP 1 Score: 74.3 bits (181), Expect = 4.6e-12 Identity = 41/141 (29.08%), Postives = 78/141 (55.32%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. TrEMBL
Match: A0A0A0LPK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381700 PE=4 SV=1) HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80 Identity = 181/415 (43.61%), Postives = 255/415 (61.45%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. TrEMBL
Match: A0A0D3DJY2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 3.1e-52 Identity = 141/409 (34.47%), Postives = 223/409 (54.52%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. TrEMBL
Match: F6H306_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05160 PE=4 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 3.1e-52 Identity = 147/423 (34.75%), Postives = 224/423 (52.96%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. TrEMBL
Match: M1BRW6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400020032 PE=4 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 1.2e-51 Identity = 163/460 (35.43%), Postives = 235/460 (51.09%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. TrEMBL
Match: R0H4C7_9BRAS (Uncharacterized protein OS=Capsella rubella GN=CARUB_v10006919mg PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 1.6e-51 Identity = 150/411 (36.50%), Postives = 228/411 (55.47%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. TAIR10
Match: AT4G31980.1 (AT4G31980.1 unknown protein) HSP 1 Score: 199.9 bits (507), Expect = 4.0e-51 Identity = 139/408 (34.07%), Postives = 220/408 (53.92%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. TAIR10
Match: AT5G11290.1 (AT5G11290.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 154.8 bits (390), Expect = 1.5e-37 Identity = 113/363 (31.13%), Postives = 189/363 (52.07%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. TAIR10
Match: AT1G67150.2 (AT1G67150.2 Plant protein of unknown function (DUF247)) HSP 1 Score: 142.9 bits (359), Expect = 5.9e-34 Identity = 133/429 (31.00%), Postives = 199/429 (46.39%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. TAIR10
Match: AT3G50120.1 (AT3G50120.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 142.1 bits (357), Expect = 1.0e-33 Identity = 127/438 (29.00%), Postives = 206/438 (47.03%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. TAIR10
Match: AT3G50140.1 (AT3G50140.1 Plant protein of unknown function (DUF247)) HSP 1 Score: 142.1 bits (357), Expect = 1.0e-33 Identity = 127/446 (28.48%), Postives = 214/446 (47.98%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. NCBI nr
Match: gi|659088876|ref|XP_008445209.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis melo]) HSP 1 Score: 310.8 bits (795), Expect = 4.6e-81 Identity = 179/408 (43.87%), Postives = 253/408 (62.01%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. NCBI nr
Match: gi|449442176|ref|XP_004138858.1| (PREDICTED: UPF0481 protein At3g47200-like [Cucumis sativus]) HSP 1 Score: 308.9 bits (790), Expect = 1.8e-80 Identity = 181/415 (43.61%), Postives = 255/415 (61.45%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. NCBI nr
Match: gi|729345608|ref|XP_010541628.1| (PREDICTED: UPF0481 protein At3g47200-like [Tarenaya hassleriana]) HSP 1 Score: 228.8 bits (582), Expect = 2.3e-56 Identity = 142/426 (33.33%), Postives = 240/426 (56.34%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. NCBI nr
Match: gi|694436354|ref|XP_009345288.1| (PREDICTED: UPF0481 protein At3g47200-like [Pyrus x bretschneideri]) HSP 1 Score: 223.0 bits (567), Expect = 1.3e-54 Identity = 155/427 (36.30%), Postives = 240/427 (56.21%), Query Frame = 1
BLAST of CmoCh05G004020.1 vs. NCBI nr
Match: gi|470113580|ref|XP_004293001.1| (PREDICTED: UPF0481 protein At3g47200-like [Fragaria vesca subsp. vesca]) HSP 1 Score: 220.7 bits (561), Expect = 6.3e-54 Identity = 142/425 (33.41%), Postives = 234/425 (55.06%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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