CmoCh04G008550.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G008550.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Heavy metal transport/detoxification superfamily protein
Location	Cmo_Chr04 : 4274350 .. 4277037 (+)
Sequence length	873

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGCTTCTATTTGATGATATTTTCAAGGTCAAGTGCGTCAACCCAGATGGTAAAAAGTATGATAAAGATACTTTCATGAAGCTTGTAACTGCTCTCTCATTCTTTTAATTCACATTTTATGATCTTTTAACTGTCTATGAGTCCTTTTGTAGACAGTAACTTCTGCACCATCTTGACTTTTATGTGAATGATTTGATATGATGTTTATTGGGTGCATAAAATTGTTCTTATAGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCAGCTATAGTGGTCAAGTAATATTTCTCCCCTCAATGTTTAATTGAATTTCATACAATCTTGGTGCTATCTGGTAGTCGTTTCATGTCTCTTCATTGTTTAAAAGAACACTCGGAAACACCTTGCTGCTAGATATCTGCATCCATATGTATCTTATAGATTCTAAAAGAAACGACCAATGATTTCATAATCTTTCTCTGATGCTGAAATTTTGGAGAAGGATTTTACCTAGCGATCTATAATAGCCCAAGCTCACTGCTATGAGACATTGTCCTCTTCGAGTTTTCCCTTTCGGGCTTCTAAACATGTCTCCTAGGGAGAGGTTTTCACACCCTTATAAGGAATGCTTTGTTCCCCTCTCCAACTGATGTGGAGTCTCACAATCCATCCCCCTTCGAGGCCTGATGTCCTTGCTGGCACTCGATCAACTCTCCAATCGATGTAGGATCTCACAATCCACCTCTCTTCGAGGTCCAACGTCCTCGCTGCCACACTGTCTGATGTCCACCCCCTTCGGGGCTTAGTGTCCTCACTGGCACACCGCCCGGTGTCCATCCCCCTTGGGGCTCAGTGTTCTCACTGGCACACCGTCCGGTATCTGGCTTTGACAGACCCATCAATAGCAAATATTGTCCACTTTGGGCTTTTCCTTTTGGACTTCTCCTCAAATTTTTAAAACGCATCTGCTAAGGAGAGGTTTTCACGCTCTTATAAGAAATGCTCTGTTCCCCTCTACAATCGACGTGAGATCTCCAGTTTCTATAAACTTTTCCTAAAGTAAAAAACAGAACAGTGATTATAAGCAAACAGCTTTATGTTCTAAAAACAAAATTATGCAAATGTTTCGTAGTATGGGAAGTGCTGAGTAGGCACTAATATCAAGCACAAACCCGTAACTTCAGCCGTGAAGATTGTGAACATAATTGAAATCTGTAGTAGCAGGAGTAATATTTTTGAACTAAACTTAAGTTGTTGCAGGAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATCGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTGTAAGTGAATTGCCATGATTTTGCTCACCCATTTCTGCTGCTGATTTTCCTAAAAGTTTAAGTGGAAGTACTTTATGCATGATTCTAACTCGATTCATAAAACATATTTTGATGTCGGAATTGGGTGTATTTTACAGAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGTCAAATTCAGGGTAGATCAGAACATGTTCTTGCTCCTCCGAAAACTCATATGAACCTCAACAATCTCTCCTAATTATCAATTATAATTCTAGATAACTTATGAATTGATTGAAGGCTTTGGTTAATTTGTAAGCTTGTTGTGAGCATTTATTACAATCATTACTAAATATCAATGGCAAAATCAAATTGAGAAGCTACAAAAACAATGAAAGTTGAAGAATAGATAGTGGGGGACATGAAGAATTAGATTCCAAATATATATAAAATGAGAGGTTTCTAGCACAAGAGCTTTGACGTACTCATTGCAAATTATCTATGTTCATATTTTCAATGCGCTCCATCACTAAAAGAAAGAAAAAATGTTCCACTTCTACTTGTTGGACGAAAGTTGAACAATTTCCAAGTTAGTATCTGAAAGCAAAGAAGCCGACGAGAAAAGGCTTTTAAAATCTCACTTTAGCGAAAGCAGATTGTATGCTAAAGCTCTCCAACCACGAAGCTTCCTCTTCTTTTCCTGTTGTAATATAAATTGGACGAATGATAGTGTGTGGTGGCAGAGAGATTGAAAATGGGGGTTGGGGGTTCGTTGGAGTATGTATCCGAGAATTACTTGATGTGCATTAGCCATAAACGCAACAATAAGCACCACCAGTTGCAGACCGTTGAGCTTAAGGTGGCTATGGATTGCGATGGGTGCGAGCTTAAAGTGAAGAAAGCTCTGTCTTCCTTACGAGGAGTGAAATCAGTGAAGATAAACAGAAAGCAGCTGAAGGTGACAGTGACAGGGTATGTGGAAGCAAGCAAAGTGTTGAAGAAGGCAAAGTCGACAGGGAAAAAGGCAGAGATATGGCCATATGTGCCCTACAATTTAGTGAAGCATCCCTACGCTGCCCCAGCTTATGATAAGAAGGCCCCTCCTGGGTATGTCAGAAATGTAGAGGACAATGCTGTGGCCTCCTCTGTTGTCAAGTTTGAAGACCCTTCCTTTGTCACCATGTTCAGTGATGATAACCCTAATGCCTGCTCCATCATGTAG

mRNA sequence

ATGGCGGAGCTTCTATTTGATGATATTTTCAAGGTCAAGTGCGTCAACCCAGATGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCAGCTATAGTGGTCAAGAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATCGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGTCAAATTCAGGTGTGTGGTGGCAGAGAGATTGAAAATGGGGGTTGGGGGTTCGTTGGAGTATGTATCCGAGAATTACTTGATGTGCATTAGCCATAAACGCAACAATAAGCACCACCAGTTGCAGACCGTTGAGCTTAAGGTGGCTATGGATTGCGATGGGTGCGAGCTTAAAGTGAAGAAAGCTCTGTCTTCCTTACGAGGAGTGAAATCAGTGAAGATAAACAGAAAGCAGCTGAAGGTGACAGTGACAGGGTATGTGGAAGCAAGCAAAGTGTTGAAGAAGGCAAAGTCGACAGGGAAAAAGGCAGAGATATGGCCATATGTGCCCTACAATTTAGTGAAGCATCCCTACGCTGCCCCAGCTTATGATAAGAAGGCCCCTCCTGGGTATGTCAGAAATGTAGAGGACAATGCTGTGGCCTCCTCTGTTGTCAAGTTTGAAGACCCTTCCTTTGTCACCATGTTCAGTGATGATAACCCTAATGCCTGCTCCATCATGTAG

Coding sequence (CDS)

ATGGCGGAGCTTCTATTTGATGATATTTTCAAGGTCAAGTGCGTCAACCCAGATGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCAGCTATAGTGGTCAAGAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATCGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGTCAAATTCAGGTGTGTGGTGGCAGAGAGATTGAAAATGGGGGTTGGGGGTTCGTTGGAGTATGTATCCGAGAATTACTTGATGTGCATTAGCCATAAACGCAACAATAAGCACCACCAGTTGCAGACCGTTGAGCTTAAGGTGGCTATGGATTGCGATGGGTGCGAGCTTAAAGTGAAGAAAGCTCTGTCTTCCTTACGAGGAGTGAAATCAGTGAAGATAAACAGAAAGCAGCTGAAGGTGACAGTGACAGGGTATGTGGAAGCAAGCAAAGTGTTGAAGAAGGCAAAGTCGACAGGGAAAAAGGCAGAGATATGGCCATATGTGCCCTACAATTTAGTGAAGCATCCCTACGCTGCCCCAGCTTATGATAAGAAGGCCCCTCCTGGGTATGTCAGAAATGTAGAGGACAATGCTGTGGCCTCCTCTGTTGTCAAGTTTGAAGACCCTTCCTTTGTCACCATGTTCAGTGATGATAACCCTAATGCCTGCTCCATCATGTAG

Homology

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BLAST of CmoCh04G008550.1 vs. Swiss-Prot
Match: HIP20_ARATH (Heavy metal-associated isoprenylated plant protein 20 OS=Arabidopsis thaliana GN=HIPP20 PE=2 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.1e-39
Identity = 83/156 (53.21%), Postives = 113/156 (72.44%), Query Frame = 1


Query: 136 MGVGGSL-EYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKS 195
           MG   SL EY+S+ + +    ++  K   +QTV +KV MDCDGCE +VK A+SS++GVKS
Sbjct: 1   MGALDSLSEYISDYFRVT---RKRRKRKVMQTVNIKVKMDCDGCERRVKNAVSSMKGVKS 60

Query: 196 VKINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGY 255
           V++NRK  KVTV+GYVE  KVLK+ + TGKKAEIWPYVPYN+V +PYA   YDKKAP GY
Sbjct: 61  VEVNRKIHKVTVSGYVEPKKVLKRIERTGKKAEIWPYVPYNMVAYPYAVGTYDKKAPAGY 120

Query: 256 VRNVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 291
           VR  E + +   +    +  ++++FSD+NPNAC++M
Sbjct: 121 VRKSEQSQL-QLLPGAPENHYISLFSDENPNACTVM 152

[Close]

BLAST of CmoCh04G008550.1 vs. Swiss-Prot
Match: HIP22_ARATH (Heavy metal-associated isoprenylated plant protein 22 OS=Arabidopsis thaliana GN=HIPP22 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-38
Identity = 81/154 (52.60%), Postives = 111/154 (72.08%), Query Frame = 1


Query: 140 GSLEYVSENYL--MCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSVKI 199
           G+L Y+SE +     +S ++  K   +QTV +KV +DCDGCE K+K A+SS++G KSV++
Sbjct: 2   GALNYLSEYFSNHFYVSIRKRKKRKVMQTVNIKVKIDCDGCERKIKNAVSSIKGAKSVEV 61

Query: 200 NRKQLKVTVTGYVEASKVLKKAKSTG-KKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYVR 259
           NRK  KVTV+GYV+  KVLK  +STG KKAE+WPYVPY +V +PYAA AYDK+APPG+VR
Sbjct: 62  NRKMHKVTVSGYVDPKKVLKTVQSTGKKKAELWPYVPYTMVAYPYAAGAYDKRAPPGFVR 121

Query: 260 NVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 291
             E    A +     D   +++FSD+NPNAC++M
Sbjct: 122 KSEQ---AQAQPGSTDDKLMSLFSDENPNACTVM 152

[Close]

BLAST of CmoCh04G008550.1 vs. Swiss-Prot
Match: HIP26_ARATH (Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.2e-34
Identity = 77/153 (50.33%), Postives = 104/153 (67.97%), Query Frame = 1


Query: 140 GSLEYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSVKINR 199
           G L++VSE +     HK   K  QLQTVE+KV MDC+GCE KV++++  ++GV SV +  
Sbjct: 2   GVLDHVSEMFDCSHGHKIK-KRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEP 61

Query: 200 KQLKVTVTGYVEASKVLKK-AKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYVRNV 259
           K  KVTV GYV+ +KV+ + +  TGKK E+WPYVPY++V HPYAA  YDKKAP GYVR V
Sbjct: 62  KAHKVTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRRV 121

Query: 260 EDNAVAS-SVVKFEDPSFVTMFSDDNPNACSIM 291
           +D  V+  +     +  + T FSD+NP AC +M
Sbjct: 122 DDPGVSQLARASSTEVRYTTAFSDENPAACVVM 153

[Close]

BLAST of CmoCh04G008550.1 vs. Swiss-Prot
Match: HIP27_ARATH (Heavy metal-associated isoprenylated plant protein 27 OS=Arabidopsis thaliana GN=HIPP27 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.2e-33
Identity = 70/138 (50.72%), Postives = 97/138 (70.29%), Query Frame = 1


Query: 156 KRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSVKINRKQLKVTVTGYVEASKV 215
           K + K  Q Q VE+KV MDC+GCE +V+K++  ++GV  V ++ KQ K+TV G+V+ SKV
Sbjct: 10  KHHKKLKQFQKVEIKVKMDCEGCERRVRKSVEGMKGVSKVTVDPKQSKLTVEGFVQPSKV 69

Query: 216 LKKAKS-TGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYVRNVEDNAVASSVVKFE--D 275
           + +    TGKKAE+WPYVPY +V HPYA  AYDKKAPPGYVRN   + + + + +    +
Sbjct: 70  VHRVMHRTGKKAELWPYVPYEVVPHPYAPGAYDKKAPPGYVRNALADPLVAPLARASSFE 129

Query: 276 PSFVTMFSDDNPNACSIM 291
             + + FSDDNPNAC+IM
Sbjct: 130 VKYTSAFSDDNPNACTIM 147

[Close]

BLAST of CmoCh04G008550.1 vs. Swiss-Prot
Match: HIP21_ARATH (Heavy metal-associated isoprenylated plant protein 21 OS=Arabidopsis thaliana GN=HIPP21 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.7e-32
Identity = 69/152 (45.39%), Postives = 106/152 (69.74%), Query Frame = 1


Query: 140 GSLEYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSVKINR 199
           G+ +Y+S ++          K   LQTV++KV MDCDGCE +V+  +  ++GVKSV++NR
Sbjct: 2   GAFDYIS-SFCSYTYANAKTKRKPLQTVDIKVKMDCDGCERRVRNVVRRMKGVKSVEVNR 61

Query: 200 KQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYVRNVE 259
           KQ ++TV G+V+ +KVLK+ KSTGKKAE WPY+P ++V +P+A   YDK+AP G++RN  
Sbjct: 62  KQSRITVNGHVDPNKVLKRVKSTGKKAEFWPYIPQHMVYYPFAPGMYDKRAPAGHIRNPT 121

Query: 260 DNAVASSVVKFEDPSFVTMFSDDNPN-ACSIM 291
            +   ++     + ++V++FSDDN + ACSIM
Sbjct: 122 QSFPTANA---PEENYVSLFSDDNVHAACSIM 149

[Close]

BLAST of CmoCh04G008550.1 vs. TrEMBL
Match: A0A0A0KZC2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G031020 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 3.8e-57
Identity = 113/133 (84.96%), Postives = 121/133 (90.98%), Query Frame = 1


Query: 1   MAELLFDDIFKVKCVNPD------VSRIEARSEKLSMYMLLDVNTEIYPIDEGDKILMVL 60
           MA LLF+DIFKVKCVNPD      VSRIEARSEKLSM+MLLDVNTEIYPIDEG+K+LMVL
Sbjct: 1   MAGLLFNDIFKVKCVNPDGKKYDKVSRIEARSEKLSMHMLLDVNTEIYPIDEGEKLLMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHRKLYKLADEGSGSDLKVEVYASFGGLQM 120
           SPTLNYDG+PVTSY  QEGKKSLADKFEYIMH K YKL+DEGSGSDLKVEVYASFGGLQM
Sbjct: 61  SPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQM 120

Query: 121 MLKGDPLHCVKFR 128
           +LKGDP+HC KFR
Sbjct: 121 LLKGDPIHCAKFR 133

[Close]

BLAST of CmoCh04G008550.1 vs. TrEMBL
Match: C6T1V0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 8.5e-57
Identity = 116/155 (74.84%), Postives = 129/155 (83.23%), Query Frame = 1


Query: 136 MGVGGSLEYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSV 195
           MGVGG+LEY+S+  LM   H  + K  Q QTVELKV MDCDGCELKVK ALSSL GVKSV
Sbjct: 1   MGVGGTLEYLSD--LMGSGHHHHKKKKQFQTVELKVRMDCDGCELKVKNALSSLSGVKSV 60

Query: 196 KINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYV 255
           +INRKQ KVTVTGYVE +KVLKKAKSTGKKAEIWPYVPYNLV HPYA P+YDKKAPPGYV
Sbjct: 61  EINRKQQKVTVTGYVEPNKVLKKAKSTGKKAEIWPYVPYNLVVHPYAVPSYDKKAPPGYV 120

Query: 256 RNVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 291
           R VE  A   ++ ++EDP ++TMFSDDNPNACSIM
Sbjct: 121 RRVEAPAHTGTITRYEDP-YITMFSDDNPNACSIM 152

[Close]

BLAST of CmoCh04G008550.1 vs. TrEMBL
Match: A0A0A0KIY2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500660 PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 1.1e-56
Identity = 118/155 (76.13%), Postives = 131/155 (84.52%), Query Frame = 1


Query: 136 MGVGGSLEYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSV 195
           MGVGG+LEY+S+  L+  +HK   K  QLQTVELKV MDCDGCELKVK ALSSL GVKSV
Sbjct: 1   MGVGGTLEYLSD--LVGNTHKHKKKK-QLQTVELKVRMDCDGCELKVKNALSSLSGVKSV 60

Query: 196 KINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYV 255
           +INRKQ KVTVTGYVEASK+LKKAKSTGKKAEIWPYVPY+LV  PY A AYDKKAPPGYV
Sbjct: 61  EINRKQQKVTVTGYVEASKILKKAKSTGKKAEIWPYVPYSLVSQPYIAQAYDKKAPPGYV 120

Query: 256 RNVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 291
           RNVE  A  +SV K+EDP ++ MFSDDNPNACS+M
Sbjct: 121 RNVEQTATTASVTKYEDP-YINMFSDDNPNACSVM 151

[Close]

BLAST of CmoCh04G008550.1 vs. TrEMBL
Match: A0A061DIW2_THECC (Heavy metal transport/detoxification domain-containing protein OS=Theobroma cacao GN=TCM_001184 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.9e-56
Identity = 114/155 (73.55%), Postives = 131/155 (84.52%), Query Frame = 1


Query: 136 MGVGGSLEYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSV 195
           MGV G+LEY+S+  LM  S  +  K  QL TVELKV MDCDGCELKVKKAL+SL GVKSV
Sbjct: 1   MGVAGTLEYLSD--LMSSSGHKYKKKKQLHTVELKVRMDCDGCELKVKKALASLSGVKSV 60

Query: 196 KINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYV 255
            INRKQ KVTVTGYVE +KVLKKAKSTGK+AEIWPYVPYNLV  PYAAPAYDKKAPPGYV
Sbjct: 61  NINRKQQKVTVTGYVETNKVLKKAKSTGKRAEIWPYVPYNLVAQPYAAPAYDKKAPPGYV 120

Query: 256 RNVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 291
           RNVE+N   ++V ++EDP ++++FSDDNPNACS+M
Sbjct: 121 RNVENNVTTAAVTRYEDP-YISLFSDDNPNACSVM 152

[Close]

BLAST of CmoCh04G008550.1 vs. TrEMBL
Match: M1BZ44_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021834 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.9e-56
Identity = 115/156 (73.72%), Postives = 129/156 (82.69%), Query Frame = 1


Query: 136 MGVGGSLEYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSV 195
           MG+GG+LEY+S   +M ISHK NNK  Q  TVELKV MDCDGCELKVKK LSSL GVKSV
Sbjct: 1   MGLGGTLEYISN--MMNISHKSNNKKRQFHTVELKVRMDCDGCELKVKKTLSSLSGVKSV 60

Query: 196 KINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYV 255
           +INRKQ KVTVTGYVEA+KVLKKAKSTGKKAEIWPYVPYNLV  PYA  +YDKKAPPGYV
Sbjct: 61  EINRKQQKVTVTGYVEANKVLKKAKSTGKKAEIWPYVPYNLVAQPYAVASYDKKAPPGYV 120

Query: 256 RNVEDNAVASSVV-KFEDPSFVTMFSDDNPNACSIM 291
           R V+ N   +  + +FED ++V+MFSDDNPNAC IM
Sbjct: 121 RRVDHNMTTTETISRFEDLAYVSMFSDDNPNACFIM 154

[Close]

BLAST of CmoCh04G008550.1 vs. TAIR10
Match: AT4G39700.1 (AT4G39700.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 209.5 bits (532), Expect = 2.7e-54
Identity = 106/158 (67.09%), Postives = 126/158 (79.75%), Query Frame = 1


Query: 136 MGVGGSLEYVSENYLMCISHK--RNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVK 195
           MGVGG+LEY+SE      SH   +  K  Q QTVELKV MDCDGC LK+K +LSSL+GVK
Sbjct: 1   MGVGGTLEYISELIGNGGSHSYGKRKKKKQFQTVELKVRMDCDGCVLKIKNSLSSLKGVK 60

Query: 196 SVKINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPG 255
           +V+IN+KQ KVTV+GY +ASKVLKKAK+TGKKAEIWPYVPYNLV  PY A AYDKKAPPG
Sbjct: 61  TVEINKKQQKVTVSGYADASKVLKKAKATGKKAEIWPYVPYNLVAQPYIAQAYDKKAPPG 120

Query: 256 YVRNVEDNAVASSV-VKFEDPSFVTMFSDDNPNACSIM 291
           YVR V+ N    ++ V ++DPS+ ++FSDDNPNACSIM
Sbjct: 121 YVRKVDPNVTTGTMAVYYDDPSYTSLFSDDNPNACSIM 158

[Close]

BLAST of CmoCh04G008550.1 vs. TAIR10
Match: AT1G71050.1 (AT1G71050.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 162.9 bits (411), Expect = 2.9e-40
Identity = 83/156 (53.21%), Postives = 113/156 (72.44%), Query Frame = 1


Query: 136 MGVGGSL-EYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKS 195
           MG   SL EY+S+ + +    ++  K   +QTV +KV MDCDGCE +VK A+SS++GVKS
Sbjct: 1   MGALDSLSEYISDYFRVT---RKRRKRKVMQTVNIKVKMDCDGCERRVKNAVSSMKGVKS 60

Query: 196 VKINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGY 255
           V++NRK  KVTV+GYVE  KVLK+ + TGKKAEIWPYVPYN+V +PYA   YDKKAP GY
Sbjct: 61  VEVNRKIHKVTVSGYVEPKKVLKRIERTGKKAEIWPYVPYNMVAYPYAVGTYDKKAPAGY 120

Query: 256 VRNVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 291
           VR  E + +   +    +  ++++FSD+NPNAC++M
Sbjct: 121 VRKSEQSQL-QLLPGAPENHYISLFSDENPNACTVM 152

[Close]

BLAST of CmoCh04G008550.1 vs. TAIR10
Match: AT1G22990.1 (AT1G22990.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 8.4e-40
Identity = 81/154 (52.60%), Postives = 111/154 (72.08%), Query Frame = 1


Query: 140 GSLEYVSENYL--MCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSVKI 199
           G+L Y+SE +     +S ++  K   +QTV +KV +DCDGCE K+K A+SS++G KSV++
Sbjct: 2   GALNYLSEYFSNHFYVSIRKRKKRKVMQTVNIKVKIDCDGCERKIKNAVSSIKGAKSVEV 61

Query: 200 NRKQLKVTVTGYVEASKVLKKAKSTG-KKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYVR 259
           NRK  KVTV+GYV+  KVLK  +STG KKAE+WPYVPY +V +PYAA AYDK+APPG+VR
Sbjct: 62  NRKMHKVTVSGYVDPKKVLKTVQSTGKKKAELWPYVPYTMVAYPYAAGAYDKRAPPGFVR 121

Query: 260 NVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 291
             E    A +     D   +++FSD+NPNAC++M
Sbjct: 122 KSEQ---AQAQPGSTDDKLMSLFSDENPNACTVM 152

[Close]

BLAST of CmoCh04G008550.1 vs. TAIR10
Match: AT4G08570.1 (AT4G08570.1 Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 159.5 bits (402), Expect = 3.2e-39
Identity = 81/156 (51.92%), Postives = 109/156 (69.87%), Query Frame = 1


Query: 136 MGVGGSLEYVSENYLMCISHKRNNKHHQLQTVELKVA-MDCDGCELKVKKALSSLRGVKS 195
           MGV G++EY+S+     +  ++  K  Q+QTV L+VA +DC+GCE K+K  LS ++GVKS
Sbjct: 1   MGVEGTMEYISD----LLKKRKRKKKKQMQTVALRVARIDCEGCERKIKHVLSGVKGVKS 60

Query: 196 VKINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGY 255
           V ++ K  KVTVTGY++  KVL+ AKST KK E+WPYVPY +V +PY + AYDKKAPP  
Sbjct: 61  VDVDVKLQKVTVTGYIDPKKVLEAAKSTKKKVELWPYVPYTMVANPYISQAYDKKAPPNM 120

Query: 256 VRNVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 291
           VR V D A  +      D S+  MFSD+NPN+C+IM
Sbjct: 121 VRKVPDTASVNETT--VDDSYTIMFSDENPNSCAIM 150

[Close]

BLAST of CmoCh04G008550.1 vs. TAIR10
Match: AT4G38580.1 (AT4G38580.1 farnesylated protein 6)

HSP 1 Score: 147.5 bits (371), Expect = 1.3e-35
Identity = 77/153 (50.33%), Postives = 104/153 (67.97%), Query Frame = 1


Query: 140 GSLEYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSVKINR 199
           G L++VSE +     HK   K  QLQTVE+KV MDC+GCE KV++++  ++GV SV +  
Sbjct: 2   GVLDHVSEMFDCSHGHKIK-KRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEP 61

Query: 200 KQLKVTVTGYVEASKVLKK-AKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYVRNV 259
           K  KVTV GYV+ +KV+ + +  TGKK E+WPYVPY++V HPYAA  YDKKAP GYVR V
Sbjct: 62  KAHKVTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRRV 121

Query: 260 EDNAVAS-SVVKFEDPSFVTMFSDDNPNACSIM 291
           +D  V+  +     +  + T FSD+NP AC +M
Sbjct: 122 DDPGVSQLARASSTEVRYTTAFSDENPAACVVM 153

[Close]

BLAST of CmoCh04G008550.1 vs. NCBI nr
Match: gi|449462830|ref|XP_004149143.1| (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 5.5e-57
Identity = 113/133 (84.96%), Postives = 121/133 (90.98%), Query Frame = 1


Query: 1   MAELLFDDIFKVKCVNPD------VSRIEARSEKLSMYMLLDVNTEIYPIDEGDKILMVL 60
           MA LLF+DIFKVKCVNPD      VSRIEARSEKLSM+MLLDVNTEIYPIDEG+K+LMVL
Sbjct: 1   MAGLLFNDIFKVKCVNPDGKKYDKVSRIEARSEKLSMHMLLDVNTEIYPIDEGEKLLMVL 60

Query: 61  SPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHRKLYKLADEGSGSDLKVEVYASFGGLQM 120
           SPTLNYDG+PVTSY  QEGKKSLADKFEYIMH K YKL+DEGSGSDLKVEVYASFGGLQM
Sbjct: 61  SPTLNYDGSPVTSYKDQEGKKSLADKFEYIMHGKTYKLSDEGSGSDLKVEVYASFGGLQM 120

Query: 121 MLKGDPLHCVKFR 128
           +LKGDP+HC KFR
Sbjct: 121 LLKGDPIHCAKFR 133

[Close]

BLAST of CmoCh04G008550.1 vs. NCBI nr
Match: gi|698462441|ref|XP_009781991.1| (PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Nicotiana sylvestris])

HSP 1 Score: 229.9 bits (585), Expect = 5.5e-57
Identity = 118/155 (76.13%), Postives = 130/155 (83.87%), Query Frame = 1


Query: 136 MGVGGSLEYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSV 195
           MG+ G+LEY+S+  +M  SHK   K  Q QTVELKV MDCDGCELKVKKALSSL GVKSV
Sbjct: 1   MGLIGTLEYISD--MMSSSHKSKKKKKQFQTVELKVRMDCDGCELKVKKALSSLSGVKSV 60

Query: 196 KINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYV 255
           +INRKQ KVTVTGYVEA+KVLKKAKSTGKK+EIWPYVPYNLV  PYAA AYDKKAPPGYV
Sbjct: 61  EINRKQQKVTVTGYVEANKVLKKAKSTGKKSEIWPYVPYNLVAQPYAAAAYDKKAPPGYV 120

Query: 256 RNVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 291
           R VE N    ++  FEDP++VTMFSDDNPNACSIM
Sbjct: 121 RRVE-NPTIGTISTFEDPAYVTMFSDDNPNACSIM 152

[Close]

BLAST of CmoCh04G008550.1 vs. NCBI nr
Match: gi|659080140|ref|XP_008440632.1| (PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Cucumis melo])

HSP 1 Score: 229.2 bits (583), Expect = 9.3e-57
Identity = 120/155 (77.42%), Postives = 131/155 (84.52%), Query Frame = 1


Query: 136 MGVGGSLEYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSV 195
           MGVGG+LEY+S+  L+  +HK   K  QLQTVELKV MDCDGCELKVK ALSSL GVKSV
Sbjct: 1   MGVGGTLEYLSD--LVGNTHKHKKKK-QLQTVELKVRMDCDGCELKVKNALSSLSGVKSV 60

Query: 196 KINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYV 255
           +INRKQ KVTVTGYVEASKVLKKAKSTGKKAEIWPYVPY+LV  PY A AYDKKAPPGYV
Sbjct: 61  EINRKQQKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYSLVSQPYIAQAYDKKAPPGYV 120

Query: 256 RNVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 291
           RNVE  A  +SV K+EDP ++ MFSDDNPNACSIM
Sbjct: 121 RNVEQTATTASVTKYEDP-YINMFSDDNPNACSIM 151

[Close]

BLAST of CmoCh04G008550.1 vs. NCBI nr
Match: gi|351726052|ref|NP_001238649.1| (uncharacterized protein LOC100500473 [Glycine max])

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 116/155 (74.84%), Postives = 129/155 (83.23%), Query Frame = 1


Query: 136 MGVGGSLEYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSV 195
           MGVGG+LEY+S+  LM   H  + K  Q QTVELKV MDCDGCELKVK ALSSL GVKSV
Sbjct: 1   MGVGGTLEYLSD--LMGSGHHHHKKKKQFQTVELKVRMDCDGCELKVKNALSSLSGVKSV 60

Query: 196 KINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYV 255
           +INRKQ KVTVTGYVE +KVLKKAKSTGKKAEIWPYVPYNLV HPYA P+YDKKAPPGYV
Sbjct: 61  EINRKQQKVTVTGYVEPNKVLKKAKSTGKKAEIWPYVPYNLVVHPYAVPSYDKKAPPGYV 120

Query: 256 RNVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 291
           R VE  A   ++ ++EDP ++TMFSDDNPNACSIM
Sbjct: 121 RRVEAPAHTGTITRYEDP-YITMFSDDNPNACSIM 152

[Close]

BLAST of CmoCh04G008550.1 vs. NCBI nr
Match: gi|659083024|ref|XP_008442145.1| (PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Cucumis melo])

HSP 1 Score: 228.8 bits (582), Expect = 1.2e-56
Identity = 124/151 (82.12%), Postives = 130/151 (86.09%), Query Frame = 1


Query: 147 ENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSVKINRKQLKVTV 206
           E+YL+CISHK   K  QLQTVELKVAMDCDGCELKVKKALSSLRGVKSVKINRKQLKVTV
Sbjct: 4   EHYLICISHKHYKKQLQLQTVELKVAMDCDGCELKVKKALSSLRGVKSVKINRKQLKVTV 63

Query: 207 TGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYVRN-----VEDN 266
            GYVEASKVLKKAKSTGKKAEIWPYVPYNLV HPY  P YDKKAPPGYVRN     VEDN
Sbjct: 64  IGYVEASKVLKKAKSTGKKAEIWPYVPYNLVAHPYIPPFYDKKAPPGYVRNANNAPVEDN 123

Query: 267 AVASSVVKFEDPS-FVTMFSDDNPN-ACSIM 291
             A S +KF+DPS FV++FSDDNPN ACSIM
Sbjct: 124 NNA-SFLKFDDPSNFVSIFSDDNPNAACSIM 153

The following BLAST results are available for this feature:

BLAST of CmoCh04G008550.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
HIP20_ARATH	5.1e-39	53.21	Heavy metal-associated isoprenylated plant protein 20 OS=Arabidopsis thaliana GN...	[more]
HIP22_ARATH	1.5e-38	52.60	Heavy metal-associated isoprenylated plant protein 22 OS=Arabidopsis thaliana GN...	[more]
HIP26_ARATH	2.2e-34	50.33	Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN...	[more]
HIP27_ARATH	3.2e-33	50.72	Heavy metal-associated isoprenylated plant protein 27 OS=Arabidopsis thaliana GN...	[more]
HIP21_ARATH	2.7e-32	45.39	Heavy metal-associated isoprenylated plant protein 21 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmoCh04G008550.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZC2_CUCSA	3.8e-57	84.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G031020 PE=4 SV=1	[more]
C6T1V0_SOYBN	8.5e-57	74.84	Putative uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0A0KIY2_CUCSA	1.1e-56	76.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G500660 PE=4 SV=1	[more]
A0A061DIW2_THECC	1.9e-56	73.55	Heavy metal transport/detoxification domain-containing protein OS=Theobroma caca...	[more]
M1BZ44_SOLTU	1.9e-56	73.72	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400021834 PE=4 SV=1	[more]

BLAST of CmoCh04G008550.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G39700.1	2.7e-54	67.09	Heavy metal transport/detoxification superfamily protein	[more]
AT1G71050.1	2.9e-40	53.21	Heavy metal transport/detoxification superfamily protein	[more]
AT1G22990.1	8.4e-40	52.60	Heavy metal transport/detoxification superfamily protein	[more]
AT4G08570.1	3.2e-39	51.92	Heavy metal transport/detoxification superfamily protein	[more]
AT4G38580.1	1.3e-35	50.33	farnesylated protein 6	[more]

BLAST of CmoCh04G008550.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462830\|ref\|XP_004149143.1\|	5.5e-57	84.96	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 8B-like [Cucumis sa...	[more]
gi\|698462441\|ref\|XP_009781991.1\|	5.5e-57	76.13	PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Nicotiana...	[more]
gi\|659080140\|ref\|XP_008440632.1\|	9.3e-57	77.42	PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Cucumis melo]	[more]
gi\|351726052\|ref\|NP_001238649.1\|	1.2e-56	74.84	uncharacterized protein LOC100500473 [Glycine max]	[more]
gi\|659083024\|ref\|XP_008442145.1\|	1.2e-56	82.12	PREDICTED: heavy metal-associated isoprenylated plant protein 26-like [Cucumis m...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005570	RNA_pol_Rpb8
IPR006121	HMA_dom
IPR012340	NA-bd_OB-fold

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030001	metal ion transport
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G008550	CmoCh04G008550	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G008550.1	CmoCh04G008550.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G008550.1.exon.1	CmoCh04G008550.1.exon.1	exon
CmoCh04G008550.1.exon.2	CmoCh04G008550.1.exon.2	exon
CmoCh04G008550.1.exon.3	CmoCh04G008550.1.exon.3	exon
CmoCh04G008550.1.exon.4	CmoCh04G008550.1.exon.4	exon
CmoCh04G008550.1.exon.5	CmoCh04G008550.1.exon.5	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G008550.1.CDS.1	CmoCh04G008550.1.CDS.1	CDS
CmoCh04G008550.1.CDS.2	CmoCh04G008550.1.CDS.2	CDS
CmoCh04G008550.1.CDS.3	CmoCh04G008550.1.CDS.3	CDS
CmoCh04G008550.1.CDS.4	CmoCh04G008550.1.CDS.4	CDS
CmoCh04G008550.1.CDS.5	CmoCh04G008550.1.CDS.5	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005570	RNA polymerase, Rpb8	PFAM	PF03870	RNA_pol_Rpb8	coord: 7..127 score: 6.7
IPR005570	RNA polymerase, Rpb8	SMART	SM00658	rpol8neu	coord: 2..133 score: 6.3
IPR006121	Heavy metal-associated domain, HMA	PFAM	PF00403	HMA	coord: 170..225 score: 6.1
IPR006121	Heavy metal-associated domain, HMA	PROFILE	PS50846	HMA_2	coord: 173..228 score: 11
IPR006121	Heavy metal-associated domain, HMA	unknown	SSF55008	HMA, heavy metal-associated domain	coord: 163..230 score: 3.14
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	G3DSA:2.40.50.140		coord: 1..127 score: 3.5
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 3..123 score: 4.97
None	No IPR available	GENE3D	G3DSA:3.30.70.100		coord: 163..230 score: 3.7
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 152..289 score: 2.6
None	No IPR available	PANTHER	PTHR22814:SF126	SUBFAMILY NOT NAMED	coord: 152..289 score: 2.6