CmoCh04G005340.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005340.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ethylene-responsive transcription factor 10
Location	Cmo_Chr04 : 2653230 .. 2654075 (-)
Sequence length	846

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCTCTCAAGCGATCTCGATCCACTGAATTTTCGGAATCCTATTTCTCTCTTCCGCCGCCCTATCTCCGCCCAATCTCCGCCGATCAGGAGCTCTCTGTTATCGTCACGGCGCTAACTTCTGTTGTCTCAGGGACGGCCTTCGATTCCGATTTCATGGAGAATAGGTTTTGGCATGATTTTCAAATTCCGCCGCCTACATTTGATTGCGCAACCTCCGCGGCTTCTGCTTCTGCTTCCGATTCCTTCTCTGTCTCCGGAACTACTTCTTCCATCAGTTGTTCCAGTACCGACGCCATTTTAGGTCCCTCTGTTTTCGAGACATGTAGCGTTTGTCGAATCGACGGTTGTTTAGGTTGCGATTTCTTTCCGCCGTCGTCTCAAGTCGATAACGAGAAGAAGAGCGGCAAAAAACGGTCGAAGAAGACTTACAGAGGCGTAAGGCAACGACCTTGGGGAAAATGGGCCGCCGAGATCCGAAACCCGAAACTCGCGACCCGAGTCTGGTTAGGGACGTTCAATACAGCCGAAGAAGCCGCTAGGGCTTACGATAAGGCAGCTTGGGAGTTCCGAGGTCCGCGAGCGAAGCTTAATTTTCCATTTACGGATGATTCGTTGCGAATGATGAGTTCGGAGCAACAAGAACAGAGACCGGAAATTGAAATGTCGAAGAACAGTAGCAATTCGACGGCGGCAACGGCGGCAATTGGAGTCGGAAATGATGATGAAATTTGGGGGAAGATTGCGAAGGATGAAGCAGATCAATGGATGTCGTCGTTGATGACGTATCACGGCGGCGAGTCGCCGGACTCCGCCAGTACTGGAATTTGGGAATTCTCGTAG

mRNA sequence

ATGTCCTCTCTCAAGCGATCTCGATCCACTGAATTTTCGGAATCCTATTTCTCTCTTCCGCCGCCCTATCTCCGCCCAATCTCCGCCGATCAGGAGCTCTCTGTTATCGTCACGGCGCTAACTTCTGTTGTCTCAGGGACGGCCTTCGATTCCGATTTCATGGAGAATAGGTTTTGGCATGATTTTCAAATTCCGCCGCCTACATTTGATTGCGCAACCTCCGCGGCTTCTGCTTCTGCTTCCGATTCCTTCTCTGTCTCCGGAACTACTTCTTCCATCAGTTGTTCCAGTACCGACGCCATTTTAGGTCCCTCTGTTTTCGAGACATGTAGCGTTTGTCGAATCGACGGTTGTTTAGGTTGCGATTTCTTTCCGCCGTCGTCTCAAGTCGATAACGAGAAGAAGAGCGGCAAAAAACGGTCGAAGAAGACTTACAGAGGCGTAAGGCAACGACCTTGGGGAAAATGGGCCGCCGAGATCCGAAACCCGAAACTCGCGACCCGAGTCTGGTTAGGGACGTTCAATACAGCCGAAGAAGCCGCTAGGGCTTACGATAAGGCAGCTTGGGAGTTCCGAGGTCCGCGAGCGAAGCTTAATTTTCCATTTACGGATGATTCGTTGCGAATGATGAGTTCGGAGCAACAAGAACAGAGACCGGAAATTGAAATGTCGAAGAACAGTAGCAATTCGACGGCGGCAACGGCGGCAATTGGAGTCGGAAATGATGATGAAATTTGGGGGAAGATTGCGAAGGATGAAGCAGATCAATGGATGTCGTCGTTGATGACGTATCACGGCGGCGAGTCGCCGGACTCCGCCAGTACTGGAATTTGGGAATTCTCGTAG

Coding sequence (CDS)

ATGTCCTCTCTCAAGCGATCTCGATCCACTGAATTTTCGGAATCCTATTTCTCTCTTCCGCCGCCCTATCTCCGCCCAATCTCCGCCGATCAGGAGCTCTCTGTTATCGTCACGGCGCTAACTTCTGTTGTCTCAGGGACGGCCTTCGATTCCGATTTCATGGAGAATAGGTTTTGGCATGATTTTCAAATTCCGCCGCCTACATTTGATTGCGCAACCTCCGCGGCTTCTGCTTCTGCTTCCGATTCCTTCTCTGTCTCCGGAACTACTTCTTCCATCAGTTGTTCCAGTACCGACGCCATTTTAGGTCCCTCTGTTTTCGAGACATGTAGCGTTTGTCGAATCGACGGTTGTTTAGGTTGCGATTTCTTTCCGCCGTCGTCTCAAGTCGATAACGAGAAGAAGAGCGGCAAAAAACGGTCGAAGAAGACTTACAGAGGCGTAAGGCAACGACCTTGGGGAAAATGGGCCGCCGAGATCCGAAACCCGAAACTCGCGACCCGAGTCTGGTTAGGGACGTTCAATACAGCCGAAGAAGCCGCTAGGGCTTACGATAAGGCAGCTTGGGAGTTCCGAGGTCCGCGAGCGAAGCTTAATTTTCCATTTACGGATGATTCGTTGCGAATGATGAGTTCGGAGCAACAAGAACAGAGACCGGAAATTGAAATGTCGAAGAACAGTAGCAATTCGACGGCGGCAACGGCGGCAATTGGAGTCGGAAATGATGATGAAATTTGGGGGAAGATTGCGAAGGATGAAGCAGATCAATGGATGTCGTCGTTGATGACGTATCACGGCGGCGAGTCGCCGGACTCCGCCAGTACTGGAATTTGGGAATTCTCGTAG

Homology

[Close]

BLAST of CmoCh04G005340.1 vs. Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 3.2e-30
Identity = 90/229 (39.30%), Postives = 126/229 (55.02%), Query Frame = 1


Query: 86  VSGTTSSISC---SSTDAILGPSV----FETCSVCRIDGCLGCDFF-------------- 145
           +SG   +  C   SS   ++   +     +TC VCRI+GCLGC++F              
Sbjct: 41  ISGENETAPCQGFSSDSTVISAGMPRLDSDTCQVCRIEGCLGCNYFFAPNQRIEKNHQQE 100

Query: 146 --------------PPSSQVDNEKKSGKKRSKKT-YRGVRQRPWGKWAAEIRNPKLATRV 205
                         P + + +   K  K+++KK  YRGVRQRPWGK+AAEIR+PK ATRV
Sbjct: 101 EEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRV 160

Query: 206 WLGTFNTAEEAARAYDKAAWEFRGPRAKLNFPFTDDSLRMMSSEQQEQRPEIEMSKNSSN 265
           WLGTF TAE+AARAYD+AA  FRGPRAKLNFPF D +  + S    +   +I    ++S 
Sbjct: 161 WLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAAD---DIGAKASASA 220

Query: 266 STAATAAIGVGNDDEIWGKIAKD-EADQWMS--SLMTYHGGESPDSAST 276
           S +AT ++    + E W     D   ++WM+   +M +  G+S DS +T
Sbjct: 221 SVSATDSV----EAEQWNGGGGDCNMEEWMNMMMMMDFGNGDSSDSGNT 262

[Close]

BLAST of CmoCh04G005340.1 vs. Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.2e-22
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 127 SSQVDNEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDK 186
           SS +  ++KS  ++  + YRGVRQRPWGKWAAEIR+P  A RVWLGTF+TAEEAA AYDK
Sbjct: 54  SSSLTLQEKSNSRQ--RNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDK 113

Query: 187 AAWEFRGPRAKLNFP 202
           AA+EFRG +AKLNFP
Sbjct: 114 AAFEFRGHKAKLNFP 126

[Close]

BLAST of CmoCh04G005340.1 vs. Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.1e-21
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 132 NEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDKAAWEF 191
           +E++ GK+  K  YRG+RQRPWGKWAAEIR+P    RVWLGTF TA+EAARAYD AA + 
Sbjct: 37  SEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKI 96

Query: 192 RGPRAKLNFPFT 204
           RG +AKLNFP T
Sbjct: 97  RGRKAKLNFPNT 108

[Close]

BLAST of CmoCh04G005340.1 vs. Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 102.1 bits (253), Expect = 1.0e-20
Identity = 59/99 (59.60%), Postives = 68/99 (68.69%), Query Frame = 1


Query: 117 GCLGCDFFP-PSS--QVDN-----EKKSGK------KRSKKTYRGVRQRPWGKWAAEIRN 176
           G LG D  P PSS  +VD+     E+   K      +  K+ YRGVRQRPWGKWAAEIR+
Sbjct: 35  GWLGIDSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRD 94

Query: 177 PKLATRVWLGTFNTAEEAARAYDKAAWEFRGPRAKLNFP 202
           P  A RVWLGTF+TAE AARAYD+AA  FRG +AKLNFP
Sbjct: 95  PHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133

[Close]

BLAST of CmoCh04G005340.1 vs. Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 100.9 bits (250), Expect = 2.3e-20
Identity = 51/69 (73.91%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 133 EKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDKAAWEFR 192
           E     +R KK YRGVRQRPWGKWAAEIR+P  ATRVWLGTF TAE AARAYD AA  FR
Sbjct: 50  ESSMSLERPKK-YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFR 109

Query: 193 GPRAKLNFP 202
           G +AKLNFP
Sbjct: 110 GSKAKLNFP 117

[Close]

BLAST of CmoCh04G005340.1 vs. TrEMBL
Match: A0A0A0L9A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207390 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 1.0e-94
Identity = 200/291 (68.73%), Postives = 225/291 (77.32%), Query Frame = 1


Query: 1   MSSLKRSRS----TEFSESY-FSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDF-M 60
           M+SLKRS S    ++  +SY FSLPPP    IS+DQELSVIVTALTSVVSGT+    + M
Sbjct: 1   MNSLKRSPSPSPSSQSPDSYHFSLPPP---SISSDQELSVIVTALTSVVSGTSSHLHYSM 60

Query: 61  ENRFWHDFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCR 120
            + FW   Q P P+F           SDSFS S T SS + S+T  I  PSVFETC+VC+
Sbjct: 61  ADAFWRQNQTPLPSFH----------SDSFSPSATISSFTSSTTHPIFPPSVFETCTVCQ 120

Query: 121 IDGCLGCDFFPPS----SQVDNEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVW 180
           I GCLGC+FFPPS    SQ+ +EKK+  KRSKKTYRGVRQRPWGKWAAEIRNPKLATRVW
Sbjct: 121 IQGCLGCNFFPPSASSSSQLSSEKKTANKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVW 180

Query: 181 LGTFNTAEEAARAYDKAAWEFRGPRAKLNFPFTDDSLRMMSSEQQEQRPEIEMSKNSSNS 240
           LGTFNTAEEAARAYDKAA EFRGPRAKLNFPFTDDSLRMMSSE++ QR E E+S+NSSNS
Sbjct: 181 LGTFNTAEEAARAYDKAALEFRGPRAKLNFPFTDDSLRMMSSEREIQRTESEISRNSSNS 240

Query: 241 TAATAAIGVGNDDEIWGKIAKDEADQWMSSLMTYHGGESPDSASTGIWEFS 282
               A IG+GN+DEIWGKIAKDE DQWMS+LMT HGG+S DSAS G WEFS
Sbjct: 241 ----AGIGIGNEDEIWGKIAKDEMDQWMSTLMTDHGGDSSDSASIGTWEFS 274

[Close]

BLAST of CmoCh04G005340.1 vs. TrEMBL
Match: A0A097LG53_9ROSA (EREBP-like factor OS=Prunus pseudocerasus GN=ERF2 PE=2 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.5e-50
Identity = 128/271 (47.23%), Postives = 164/271 (60.52%), Query Frame = 1


Query: 13  SESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWHDFQIPPPTFDCA 72
           +E   SLPP   R ++ DQEL+VIV+AL +VV+GTA  +    N       + PP    A
Sbjct: 19  AEPPMSLPP---RRLTQDQELTVIVSALRNVVAGTATAASMDFN------SLLPPLQYAA 78

Query: 73  TSAASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRIDGCLGCDFFPPSSQ--- 132
           TS   A+ S  +S             DA+L PS  +TC+VC+I GCLGC+FFPPS+Q   
Sbjct: 79  TSYPGATGSSCYS-------------DALLTPSDLDTCNVCKIKGCLGCNFFPPSAQEEK 138

Query: 133 VDNEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDKAAW 192
            +N KK  KKR KK YRGVRQRPWGKWAAEIR+P+ ATRVWLGTF TAEEAARAYDKAA 
Sbjct: 139 ANNSKKGPKKRVKKNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFTTAEEAARAYDKAAI 198

Query: 193 EFRGPRAKLNFPFTDDSLRMMSSEQ----QEQRPEIEMSKNSSNS--TAATAAIGVGNDD 252
           EFRGPRAKLNFPF D +L    +      Q  +P+  +++  +N+  +       +G + 
Sbjct: 199 EFRGPRAKLNFPFPDTTLLTQETNSAQPAQPAQPQQVVTEQETNNEFSREIEMTEIGKEK 258

Query: 253 EIWGKIAKDEADQWMSSLMTYHGGESPDSAS 275
           E W  I +DE   WM  +M +    S DS +
Sbjct: 259 EFWEIIGEDEIQHWM-RMMDFATDHSSDSGN 266

[Close]

BLAST of CmoCh04G005340.1 vs. TrEMBL
Match: A0A067LCS4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01609 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.6e-50
Identity = 121/249 (48.59%), Postives = 161/249 (64.66%), Query Frame = 1


Query: 27  ISADQELSVIVTALTSVVSGTAFDSDFMENRFWHDFQIPPPTFDCATSAASASASDSFSV 86
           ++ DQEL ++V+AL +VVSGT   +    + F H F         A+S++ A+A  S +V
Sbjct: 6   LTQDQELFIMVSALKNVVSGTTSSTSVATDLF-HQFAA------AASSSSPATAVASTAV 65

Query: 87  SGTTSSISCSSTDAILGPSVFETCSVCRIDGCLGCDFFPPSSQVDNEKKSGKKRSKKTYR 146
           + TT S+     + I  PS  +TC++C+I GCLGC+FFPP+ +   EKK  +KR KK YR
Sbjct: 66  TTTTDSLY----NPIPPPSDLDTCNICKIKGCLGCNFFPPNQE---EKKGTRKRVKKNYR 125

Query: 147 GVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDKAAWEFRGPRAKLNFPFTDDS 206
           GVRQRPWGKWAAEIR+P+ ATRVWLGTFNTAEEAARAYDKAA +FRGPRAKLNFPF D++
Sbjct: 126 GVRQRPWGKWAAEIRDPRRATRVWLGTFNTAEEAARAYDKAAIDFRGPRAKLNFPFPDNT 185

Query: 207 LRMMSSEQQEQRPEIEMSKNSSNSTAATAAIGVGNDDEIWGKIAKDEADQWMSSLMTYHG 266
               S+ + +  P+ +  K +         + VG + E W KI +DE  QWM+  M    
Sbjct: 186 A---SNLEGQSTPQEQQQKENGKRKELEVEMQVGKEYEFWEKIGEDEIQQWMN--MMDFN 235

Query: 267 GESPDSAST 276
           G+S DS  T
Sbjct: 246 GDSSDSTGT 235

[Close]

BLAST of CmoCh04G005340.1 vs. TrEMBL
Match: A0A0M4KSE3_9ROSA (AP2/EREBP family transcription factor-like protein 11 OS=Prunus pseudocerasus PE=2 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 3.4e-50
Identity = 128/274 (46.72%), Postives = 164/274 (59.85%), Query Frame = 1


Query: 13  SESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWHDFQIPPPTFDCA 72
           +E   SLPP   R ++ DQEL+VIV+AL +VV+GTA  +    N       + PP    A
Sbjct: 19  AEPPMSLPP---RRLTQDQELTVIVSALRNVVAGTATAASMDFN------SLLPPLQYAA 78

Query: 73  TSAASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRIDGCLGCDFFPPSSQ--- 132
           TS   A+ S  +S             DA+L PS  +TC+VC+I GCLGC+FFPPS+Q   
Sbjct: 79  TSYPGATGSSCYS-------------DALLTPSDLDTCNVCKIKGCLGCNFFPPSAQEEK 138

Query: 133 VDNEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDKAAW 192
            +N KK  KKR KK YRGVRQRPWGKWAAEIR+P+ ATRVWLGTF TAEEAARAYDKAA 
Sbjct: 139 ANNSKKGPKKRVKKNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFTTAEEAARAYDKAAI 198

Query: 193 EFRGPRAKLNFPFTDDSLRMMSSEQ-------QEQRPEIEMSKNSSNS--TAATAAIGVG 252
           EFRGPRAKLNFPF D +L    +         Q  +P+  +++  +N+  +       +G
Sbjct: 199 EFRGPRAKLNFPFPDTTLLTQETNSAQPAQPAQPAQPQQVVTEQETNNEFSREIEMTEIG 258

Query: 253 NDDEIWGKIAKDEADQWMSSLMTYHGGESPDSAS 275
            + E W  I +DE   WM  +M +    S DS +
Sbjct: 259 KEKEFWEIIGEDEIQHWM-RMMDFATDHSSDSGN 269

[Close]

BLAST of CmoCh04G005340.1 vs. TrEMBL
Match: V5NZC9_COFAR (Ethylene response factor 2 OS=Coffea arabica PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 3.7e-49
Identity = 127/301 (42.19%), Postives = 177/301 (58.80%), Query Frame = 1


Query: 4   LKRSRSTEFSESYFSLPPPYLRPISADQELSVIVTALTSVVSG------TAFDSDFMENR 63
           L  S +T         PPP  R I+++QE+SV+V AL +V++G      T   + + +  
Sbjct: 15  LTSSHATSILPPPLPPPPPPPRMITSEQEVSVMVAALKNVIAGSSTATTTTTATPYADAN 74

Query: 64  FWHDFQI-PPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRID 123
             HDF++ PP  F+CAT+++S+S+S +F           ++ + ++  +  +TC +C  +
Sbjct: 75  TLHDFRLFPPSFFECATASSSSSSSSAF----------FNANNLVVPAAAVQTCQLCGYE 134

Query: 124 GCLGCDFFPPSSQ--VDNEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTF 183
           GCLGC++F PS+    DN KK+G KR KK YRGVRQRPWGKWAAEIR+P+ A RVWLGTF
Sbjct: 135 GCLGCNYFSPSAAPVEDNNKKNGVKRKKKNYRGVRQRPWGKWAAEIRDPRKAARVWLGTF 194

Query: 184 NTAEEAARAYDKAAWEFRGPRAKLNFPFTD---DSLRMMSSEQQ---------------E 243
            TAE+AARAYD+AA EFRGPRAKLNFPF+D   D  +  SS QQ               +
Sbjct: 195 ETAEDAARAYDRAAIEFRGPRAKLNFPFSDYTLDGHQSSSSSQQVPERDQHHHHHLPHKQ 254

Query: 244 QRPEIEMSKNSSNSTAATAAIGVGNDDEIWGKIAKDEADQWMSSLMTYHGGESPDSASTG 278
            +PEI+ +KN    T+    +G  N  E W  I ++E  QWM  +M    G S  S S  
Sbjct: 255 LQPEIK-AKNEIVDTSG-MELGTSNGMEFWEAIGEEEIQQWM--MMMDFQGHSSSSGSGN 301

[Close]

BLAST of CmoCh04G005340.1 vs. TAIR10
Match: AT4G34410.1 (AT4G34410.1 redox responsive transcription factor 1)

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-31
Identity = 90/229 (39.30%), Postives = 126/229 (55.02%), Query Frame = 1


Query: 86  VSGTTSSISC---SSTDAILGPSV----FETCSVCRIDGCLGCDFF-------------- 145
           +SG   +  C   SS   ++   +     +TC VCRI+GCLGC++F              
Sbjct: 41  ISGENETAPCQGFSSDSTVISAGMPRLDSDTCQVCRIEGCLGCNYFFAPNQRIEKNHQQE 100

Query: 146 --------------PPSSQVDNEKKSGKKRSKKT-YRGVRQRPWGKWAAEIRNPKLATRV 205
                         P + + +   K  K+++KK  YRGVRQRPWGK+AAEIR+PK ATRV
Sbjct: 101 EEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRV 160

Query: 206 WLGTFNTAEEAARAYDKAAWEFRGPRAKLNFPFTDDSLRMMSSEQQEQRPEIEMSKNSSN 265
           WLGTF TAE+AARAYD+AA  FRGPRAKLNFPF D +  + S    +   +I    ++S 
Sbjct: 161 WLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAAD---DIGAKASASA 220

Query: 266 STAATAAIGVGNDDEIWGKIAKD-EADQWMS--SLMTYHGGESPDSAST 276
           S +AT ++    + E W     D   ++WM+   +M +  G+S DS +T
Sbjct: 221 SVSATDSV----EAEQWNGGGGDCNMEEWMNMMMMMDFGNGDSSDSGNT 262

[Close]

BLAST of CmoCh04G005340.1 vs. TAIR10
Match: AT2G33710.2 (AT2G33710.2 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 106.7 bits (265), Expect = 2.4e-23
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 1


Query: 127 SSQVDNEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDK 186
           SS +  ++KS  ++  + YRGVRQRPWGKWAAEIR+P  A RVWLGTF+TAEEAA AYDK
Sbjct: 54  SSSLTLQEKSNSRQ--RNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDK 113

Query: 187 AAWEFRGPRAKLNFP 202
           AA+EFRG +AKLNFP
Sbjct: 114 AAFEFRGHKAKLNFP 126

[Close]

BLAST of CmoCh04G005340.1 vs. TAIR10
Match: AT2G47520.1 (AT2G47520.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-22
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1


Query: 132 NEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDKAAWEF 191
           +E++ GK+  K  YRG+RQRPWGKWAAEIR+P    RVWLGTF TA+EAARAYD AA + 
Sbjct: 37  SEERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKI 96

Query: 192 RGPRAKLNFPFT 204
           RG +AKLNFP T
Sbjct: 97  RGRKAKLNFPNT 108

[Close]

BLAST of CmoCh04G005340.1 vs. TAIR10
Match: AT5G50080.1 (AT5G50080.1 ethylene response factor 110)

HSP 1 Score: 102.1 bits (253), Expect = 5.9e-22
Identity = 59/99 (59.60%), Postives = 68/99 (68.69%), Query Frame = 1


Query: 117 GCLGCDFFP-PSS--QVDN-----EKKSGK------KRSKKTYRGVRQRPWGKWAAEIRN 176
           G LG D  P PSS  +VD+     E+   K      +  K+ YRGVRQRPWGKWAAEIR+
Sbjct: 35  GWLGIDSAPIPSSFARVDSSHNPIEESMSKAFPEEAREKKRRYRGVRQRPWGKWAAEIRD 94

Query: 177 PKLATRVWLGTFNTAEEAARAYDKAAWEFRGPRAKLNFP 202
           P  A RVWLGTF+TAE AARAYD+AA  FRG +AKLNFP
Sbjct: 95  PHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133

[Close]

BLAST of CmoCh04G005340.1 vs. TAIR10
Match: AT1G43160.1 (AT1G43160.1 related to AP2 6)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-21
Identity = 51/69 (73.91%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 133 EKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDKAAWEFR 192
           E     +R KK YRGVRQRPWGKWAAEIR+P  ATRVWLGTF TAE AARAYD AA  FR
Sbjct: 50  ESSMSLERPKK-YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFR 109

Query: 193 GPRAKLNFP 202
           G +AKLNFP
Sbjct: 110 GSKAKLNFP 117

[Close]

BLAST of CmoCh04G005340.1 vs. NCBI nr
Match: gi|659112224|ref|XP_008456122.1| (PREDICTED: ethylene-responsive transcription factor ERF109 [Cucumis melo])

HSP 1 Score: 394.8 bits (1013), Expect = 1.2e-106
Identity = 215/285 (75.44%), Postives = 236/285 (82.81%), Query Frame = 1


Query: 1   MSSLKRSRSTEFSESY-FSLPPPYLRP-ISADQELSVIVTALTSVVSGTAFDSDF-MENR 60
           M+SLKRSRSTE  +S+ FSLPPPY RP IS DQELSVIVTALTSVVSGTA D  + M + 
Sbjct: 1   MNSLKRSRSTESPQSFHFSLPPPYFRPCISTDQELSVIVTALTSVVSGTASDLHYSMADG 60

Query: 61  FWHDFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRIDG 120
           FW   Q PPP+FD       + ASDSFS S TTSS+S SSTDAI  PSVFETCSVC+I+G
Sbjct: 61  FWRQNQTPPPSFD-------SPASDSFSASATTSSLSSSSTDAIFSPSVFETCSVCQIEG 120

Query: 121 CLGCDFFPPSS-QVDNEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNT 180
           CLGC+FFPPSS QV+ EKK G KRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNT
Sbjct: 121 CLGCNFFPPSSSQVNVEKKIGNKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNT 180

Query: 181 AEEAARAYDKAAWEFRGPRAKLNFPFTDDSLRMMSSEQQEQRPEIEMSKNSSNSTAATAA 240
           AEEAARAYDKAA EFRGPRAKLNFPFTDDSLRMMSSE++ QR E E+S+N SNS+     
Sbjct: 181 AEEAARAYDKAALEFRGPRAKLNFPFTDDSLRMMSSEREIQRTENEISRNGSNSSGN--- 240

Query: 241 IGVGNDDEIWGKIAKDEADQWMSSLMTYHGGESPDSASTGIWEFS 282
            G+GN+DEIWGKIAKDE DQWMS+LMT HGG+S DSAS G WEFS
Sbjct: 241 -GIGNEDEIWGKIAKDEMDQWMSTLMTDHGGDSSDSASIGTWEFS 274

[Close]

BLAST of CmoCh04G005340.1 vs. NCBI nr
Match: gi|449446085|ref|XP_004140802.1| (PREDICTED: ethylene-responsive transcription factor ERF109 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 1.4e-94
Identity = 200/291 (68.73%), Postives = 225/291 (77.32%), Query Frame = 1


Query: 1   MSSLKRSRS----TEFSESY-FSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDF-M 60
           M+SLKRS S    ++  +SY FSLPPP    IS+DQELSVIVTALTSVVSGT+    + M
Sbjct: 1   MNSLKRSPSPSPSSQSPDSYHFSLPPP---SISSDQELSVIVTALTSVVSGTSSHLHYSM 60

Query: 61  ENRFWHDFQIPPPTFDCATSAASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCR 120
            + FW   Q P P+F           SDSFS S T SS + S+T  I  PSVFETC+VC+
Sbjct: 61  ADAFWRQNQTPLPSFH----------SDSFSPSATISSFTSSTTHPIFPPSVFETCTVCQ 120

Query: 121 IDGCLGCDFFPPS----SQVDNEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVW 180
           I GCLGC+FFPPS    SQ+ +EKK+  KRSKKTYRGVRQRPWGKWAAEIRNPKLATRVW
Sbjct: 121 IQGCLGCNFFPPSASSSSQLSSEKKTANKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVW 180

Query: 181 LGTFNTAEEAARAYDKAAWEFRGPRAKLNFPFTDDSLRMMSSEQQEQRPEIEMSKNSSNS 240
           LGTFNTAEEAARAYDKAA EFRGPRAKLNFPFTDDSLRMMSSE++ QR E E+S+NSSNS
Sbjct: 181 LGTFNTAEEAARAYDKAALEFRGPRAKLNFPFTDDSLRMMSSEREIQRTESEISRNSSNS 240

Query: 241 TAATAAIGVGNDDEIWGKIAKDEADQWMSSLMTYHGGESPDSASTGIWEFS 282
               A IG+GN+DEIWGKIAKDE DQWMS+LMT HGG+S DSAS G WEFS
Sbjct: 241 ----AGIGIGNEDEIWGKIAKDEMDQWMSTLMTDHGGDSSDSASIGTWEFS 274

[Close]

BLAST of CmoCh04G005340.1 vs. NCBI nr
Match: gi|802563398|ref|XP_012066876.1| (PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas])

HSP 1 Score: 211.8 bits (538), Expect = 1.5e-51
Identity = 126/258 (48.84%), Postives = 166/258 (64.34%), Query Frame = 1


Query: 19  LPPPYLRP-ISADQELSVIVTALTSVVSGTAFDSDFMENRFWHDFQIPPPTFDCATSAAS 78
           LPP  L P ++ DQEL ++V+AL +VVSGT   +    + F H F         A+S++ 
Sbjct: 19  LPPAMLLPRLTQDQELFIMVSALKNVVSGTTSSTSVATDLF-HQFAA------AASSSSP 78

Query: 79  ASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRIDGCLGCDFFPPSSQVDNEKKSG 138
           A+A  S +V+ TT S+     + I  PS  +TC++C+I GCLGC+FFPP+ +   EKK  
Sbjct: 79  ATAVASTAVTTTTDSL----YNPIPPPSDLDTCNICKIKGCLGCNFFPPNQE---EKKGT 138

Query: 139 KKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDKAAWEFRGPRAK 198
           +KR KK YRGVRQRPWGKWAAEIR+P+ ATRVWLGTFNTAEEAARAYDKAA +FRGPRAK
Sbjct: 139 RKRVKKNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFNTAEEAARAYDKAAIDFRGPRAK 198

Query: 199 LNFPFTDDSLRMMSSEQQEQRPEIEMSKNSSNSTAATAAIGVGNDDEIWGKIAKDEADQW 258
           LNFPF D++    S+ + +  P+ +  K +         + VG + E W KI +DE  QW
Sbjct: 199 LNFPFPDNT---ASNLEGQSTPQEQQQKENGKRKELEVEMQVGKEYEFWEKIGEDEIQQW 257

Query: 259 MSSLMTYHGGESPDSAST 276
           M+  M    G+S DS  T
Sbjct: 259 MN--MMDFNGDSSDSTGT 257

[Close]

BLAST of CmoCh04G005340.1 vs. NCBI nr
Match: gi|698876304|gb|AIU05286.1| (EREBP-like factor [Prunus pseudocerasus])

HSP 1 Score: 208.0 bits (528), Expect = 2.2e-50
Identity = 128/271 (47.23%), Postives = 164/271 (60.52%), Query Frame = 1


Query: 13  SESYFSLPPPYLRPISADQELSVIVTALTSVVSGTAFDSDFMENRFWHDFQIPPPTFDCA 72
           +E   SLPP   R ++ DQEL+VIV+AL +VV+GTA  +    N       + PP    A
Sbjct: 19  AEPPMSLPP---RRLTQDQELTVIVSALRNVVAGTATAASMDFN------SLLPPLQYAA 78

Query: 73  TSAASASASDSFSVSGTTSSISCSSTDAILGPSVFETCSVCRIDGCLGCDFFPPSSQ--- 132
           TS   A+ S  +S             DA+L PS  +TC+VC+I GCLGC+FFPPS+Q   
Sbjct: 79  TSYPGATGSSCYS-------------DALLTPSDLDTCNVCKIKGCLGCNFFPPSAQEEK 138

Query: 133 VDNEKKSGKKRSKKTYRGVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDKAAW 192
            +N KK  KKR KK YRGVRQRPWGKWAAEIR+P+ ATRVWLGTF TAEEAARAYDKAA 
Sbjct: 139 ANNSKKGPKKRVKKNYRGVRQRPWGKWAAEIRDPRRATRVWLGTFTTAEEAARAYDKAAI 198

Query: 193 EFRGPRAKLNFPFTDDSLRMMSSEQ----QEQRPEIEMSKNSSNS--TAATAAIGVGNDD 252
           EFRGPRAKLNFPF D +L    +      Q  +P+  +++  +N+  +       +G + 
Sbjct: 199 EFRGPRAKLNFPFPDTTLLTQETNSAQPAQPAQPQQVVTEQETNNEFSREIEMTEIGKEK 258

Query: 253 EIWGKIAKDEADQWMSSLMTYHGGESPDSAS 275
           E W  I +DE   WM  +M +    S DS +
Sbjct: 259 EFWEIIGEDEIQHWM-RMMDFATDHSSDSGN 266

[Close]

BLAST of CmoCh04G005340.1 vs. NCBI nr
Match: gi|643735777|gb|KDP42285.1| (hypothetical protein JCGZ_01609 [Jatropha curcas])

HSP 1 Score: 207.2 bits (526), Expect = 3.7e-50
Identity = 121/249 (48.59%), Postives = 161/249 (64.66%), Query Frame = 1


Query: 27  ISADQELSVIVTALTSVVSGTAFDSDFMENRFWHDFQIPPPTFDCATSAASASASDSFSV 86
           ++ DQEL ++V+AL +VVSGT   +    + F H F         A+S++ A+A  S +V
Sbjct: 6   LTQDQELFIMVSALKNVVSGTTSSTSVATDLF-HQFAA------AASSSSPATAVASTAV 65

Query: 87  SGTTSSISCSSTDAILGPSVFETCSVCRIDGCLGCDFFPPSSQVDNEKKSGKKRSKKTYR 146
           + TT S+     + I  PS  +TC++C+I GCLGC+FFPP+ +   EKK  +KR KK YR
Sbjct: 66  TTTTDSLY----NPIPPPSDLDTCNICKIKGCLGCNFFPPNQE---EKKGTRKRVKKNYR 125

Query: 147 GVRQRPWGKWAAEIRNPKLATRVWLGTFNTAEEAARAYDKAAWEFRGPRAKLNFPFTDDS 206
           GVRQRPWGKWAAEIR+P+ ATRVWLGTFNTAEEAARAYDKAA +FRGPRAKLNFPF D++
Sbjct: 126 GVRQRPWGKWAAEIRDPRRATRVWLGTFNTAEEAARAYDKAAIDFRGPRAKLNFPFPDNT 185

Query: 207 LRMMSSEQQEQRPEIEMSKNSSNSTAATAAIGVGNDDEIWGKIAKDEADQWMSSLMTYHG 266
               S+ + +  P+ +  K +         + VG + E W KI +DE  QWM+  M    
Sbjct: 186 A---SNLEGQSTPQEQQQKENGKRKELEVEMQVGKEYEFWEKIGEDEIQQWMN--MMDFN 235

Query: 267 GESPDSAST 276
           G+S DS  T
Sbjct: 246 GDSSDSTGT 235

The following BLAST results are available for this feature:

BLAST of CmoCh04G005340.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EF109_ARATH	3.2e-30	39.30	Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF10...	[more]
EF112_ARATH	4.2e-22	69.33	Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF11...	[more]
ERF71_ARATH	2.1e-21	66.67	Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF07...	[more]
EF110_ARATH	1.0e-20	59.60	Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF11...	[more]
RAP26_ARATH	2.3e-20	73.91	Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-...	[more]

BLAST of CmoCh04G005340.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9A3_CUCSA	1.0e-94	68.73	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G207390 PE=4 SV=1	[more]
A0A097LG53_9ROSA	1.5e-50	47.23	EREBP-like factor OS=Prunus pseudocerasus GN=ERF2 PE=2 SV=1	[more]
A0A067LCS4_JATCU	2.6e-50	48.59	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01609 PE=4 SV=1	[more]
A0A0M4KSE3_9ROSA	3.4e-50	46.72	AP2/EREBP family transcription factor-like protein 11 OS=Prunus pseudocerasus PE...	[more]
V5NZC9_COFAR	3.7e-49	42.19	Ethylene response factor 2 OS=Coffea arabica PE=2 SV=1	[more]

BLAST of CmoCh04G005340.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34410.1	1.8e-31	39.30	redox responsive transcription factor 1	[more]
AT2G33710.2	2.4e-23	69.33	Integrase-type DNA-binding superfamily protein	[more]
AT2G47520.1	1.2e-22	66.67	Integrase-type DNA-binding superfamily protein	[more]
AT5G50080.1	5.9e-22	59.60	ethylene response factor 110	[more]
AT1G43160.1	1.3e-21	73.91	related to AP2 6	[more]

BLAST of CmoCh04G005340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112224\|ref\|XP_008456122.1\|	1.2e-106	75.44	PREDICTED: ethylene-responsive transcription factor ERF109 [Cucumis melo]	[more]
gi\|449446085\|ref\|XP_004140802.1\|	1.4e-94	68.73	PREDICTED: ethylene-responsive transcription factor ERF109 [Cucumis sativus]	[more]
gi\|802563398\|ref\|XP_012066876.1\|	1.5e-51	48.84	PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas...	[more]
gi\|698876304\|gb\|AIU05286.1\|	2.2e-50	47.23	EREBP-like factor [Prunus pseudocerasus]	[more]
gi\|643735777\|gb\|KDP42285.1\|	3.7e-50	48.59	hypothetical protein JCGZ_01609 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G005340	CmoCh04G005340	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G005340.1	CmoCh04G005340.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G005340.1.CDS.1	CmoCh04G005340.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G005340.1.exon.1	CmoCh04G005340.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 145..156 score: 2.6E-12coord: 167..183 score: 2.6
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 144..201 score: 9.5
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 145..193 score: 2.0
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 144..207 score: 8.6
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 144..201 score: 24
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 144..202 score: 5.69
None	No IPR available	PANTHER	PTHR31677	FAMILY NOT NAMED	coord: 3..224 score: 2.8
None	No IPR available	PANTHER	PTHR31677:SF11	SUBFAMILY NOT NAMED	coord: 3..224 score: 2.8