CmoCh04G005320.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G005320.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	ATP synthase subunit alpha
Location	Cmo_Chr04 : 2645399 .. 2646420 (-)
Sequence length	483

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCTACAAACATAAAACAACTATATTGAGCGAAACGCTCAACAAAAAAGCACACCCTGAGATTATTTCAGGTAAATTTGTGCACGAACCTATGCAAACTGGGTTAAAAGCAGTAGATAGCCTGGTTCCTATAGGCCGTGGCCAACGAGAACTTATAATCGGGGACCGACAAACAGAAAAAAAACTCAAGACCTTCGTAACTTATAATCCACTTAACTATGTTCCGATCTGCAATTTTCCTTCTAATATATTGTATGAAGATTAAGCAACTGTGTATTGAGTGAAAGGCTCAACAAAAAAGCACAGAGAAACTCAGGACCCTCGTTCATTAGCTAAGATAGGGGGTATTAATCCAAAGAACTATGTAACATAAAAGAGCTGTATTGAGTGAAAAGCGTTCAATGAAAAGCACAAAGGAGCTCAGGGCCCTCGTTCATTGGCTAAGAGGCAGCATTGCTACCAAGCGCCAGAGAATTAATCAGTTCTCCTCGGACATCAACAGCATAACAATTTGAACATTCTATAAAACAGCTTAGACATCATCAACCTAAAAGTAATTTTACTGTCAACAATTTATTACATTCACCTGTAAAGGAGTAACTTCGTGTACTAACAGCGAAGGACAAACTTGTCGCAAATTTTCAGCTACAAGGCATCCCGCGCAGCGATTCTACATGTTATGGCATCTCCAACTGAGGATATTGTCAACTCGGGTCCGGTGATCTTAAAATGCTGAAGAAAAAAAGAACAATCATTTGCTATTGGCAGGGAATAACCCATAATTTGTTGTATAGTAGAAAACTTTGTAACTTAAAAATCATGTTGAGGGTCTAGTGGAGCGAGCATAGGCTTCATAGAAAATAGTGGAGGTGAACCAAGAGCATAACGTAATGGCTTGTTGCCCTAAATACTCAGTTATCAAAGGAGGAAAAAAATCATAATTGGCATATCAAGAAGACATGGAATGCACCTTTTGTATCAGAGCTTGGTCTGCTCTCCCTCCCAATTCCTCTAAGTTGA

mRNA sequence

ATGACCTACAAACATAAAACAACTATATTGAGCGAAACGCTCAACAAAAAAGCACACCCTGAGATTATTTCAGGTAAATTTGTGCACGAACCTATGCAAACTGGGTTAAAAGCAGTAGATAGCCTGGTTCCTATAGGCCGTGGCCAACGAGAACTTATAATCGGGGACCGACAAACAGAAAAAAAACTCAAGACCTTCGTAACTTATAATCCACTTAACTATGTTCCGATCTGCAATTTTCCTTCTAATATATTCTTAGACATCATCAACCTAAAACGAAGGACAAACTTGTCGCAAATTTTCAGCTACAAGGCATCCCGCGCAGCGATTCTACATGTTATGGCATCTCCAACTGAGGATATTGTCAACTCGGGTCCGTTATCAAAGGAGGAAAAAAATCATAATTGGCATATCAAGAAGACATGGAATGCACCTTTTGTATCAGAGCTTGGTCTGCTCTCCCTCCCAATTCCTCTAAGTTGA

Coding sequence (CDS)

ATGACCTACAAACATAAAACAACTATATTGAGCGAAACGCTCAACAAAAAAGCACACCCTGAGATTATTTCAGGTAAATTTGTGCACGAACCTATGCAAACTGGGTTAAAAGCAGTAGATAGCCTGGTTCCTATAGGCCGTGGCCAACGAGAACTTATAATCGGGGACCGACAAACAGAAAAAAAACTCAAGACCTTCGTAACTTATAATCCACTTAACTATGTTCCGATCTGCAATTTTCCTTCTAATATATTCTTAGACATCATCAACCTAAAACGAAGGACAAACTTGTCGCAAATTTTCAGCTACAAGGCATCCCGCGCAGCGATTCTACATGTTATGGCATCTCCAACTGAGGATATTGTCAACTCGGGTCCGTTATCAAAGGAGGAAAAAAATCATAATTGGCATATCAAGAAGACATGGAATGCACCTTTTGTATCAGAGCTTGGTCTGCTCTCCCTCCCAATTCCTCTAAGTTGA

Homology

[Close]

BLAST of CmoCh04G005320.1 vs. Swiss-Prot
Match: ATPA_GRABC (ATP synthase subunit alpha OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpA PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.2e-14
Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1


Query: 4   KHKTTILSETLNKKAHPEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEKK- 63
           K   T ++ T  +   P II  K VHEPMQTGLK+VD+L+PIGRGQREL+IGDRQT K  
Sbjct: 119 KGPLTDVTRTRVEVKAPGIIPRKSVHEPMQTGLKSVDALIPIGRGQRELVIGDRQTGKTT 178

Query: 64  --LKTFVTYNPLN 74
             L TF+   P+N
Sbjct: 179 VILDTFINQKPIN 191

[Close]

BLAST of CmoCh04G005320.1 vs. Swiss-Prot
Match: ATPA_CHESB (ATP synthase subunit alpha OS=Chelativorans sp. (strain BNC1) GN=atpA PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13
Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEKK---LKTFVTYNPLN 74
           P II  K VHEPM TGLKA+D+L+PIGRGQRELIIGDRQT K    L TF+   PLN
Sbjct: 134 PGIIPRKSVHEPMSTGLKAIDALIPIGRGQRELIIGDRQTGKTAIILDTFLNQKPLN 190

[Close]

BLAST of CmoCh04G005320.1 vs. Swiss-Prot
Match: ATPA_ACICJ (ATP synthase subunit alpha OS=Acidiphilium cryptum (strain JF-5) GN=atpA PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.5e-13
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEKK---LKTFVTYNPLN 74
           P II  K VHEPMQTG+K++D+L+PIGRGQREL+IGDRQT K    + TF+   PLN
Sbjct: 135 PGIIPRKSVHEPMQTGVKSIDALIPIGRGQRELVIGDRQTGKTAIIVDTFINQKPLN 191

[Close]

BLAST of CmoCh04G005320.1 vs. Swiss-Prot
Match: ATPAM_MARPO (ATP synthase subunit alpha, mitochondrial OS=Marchantia polymorpha GN=ATPA PE=3 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 4.6e-13
Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK 62
           P II+ K VHEPMQTGLKAVDSLVPIGRGQRELIIGDRQT K
Sbjct: 135 PGIIARKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGK 176

[Close]

BLAST of CmoCh04G005320.1 vs. Swiss-Prot
Match: ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.0e-13
Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK 62
           P II  K VHEPMQTGLKAVDSLVPIGRGQRELIIGDRQT K
Sbjct: 136 PGIIERKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGK 177

[Close]

BLAST of CmoCh04G005320.1 vs. TrEMBL
Match: Q09QV8_PSINU (ATP synthase subunit alpha (Fragment) OS=Psilotum nudum GN=atp1 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK---KLKTFVTYNPLNYVP 79
           P II+ K VHEPMQTGLKAVDSLVPIGRGQRELIIGDRQT K    + T +   P+N   
Sbjct: 90  PGIIARKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKPINLAQ 149

Query: 80  ICNFPSNIFLDIINL-KRRTNLSQIFSYKASRAAILH--VMASPTED 121
             +    +F   + + ++R+ ++Q+    +   A+ +  V+A+   D
Sbjct: 150 GTSDSERLFCVYVAIGQKRSTVAQLVKIPSEAGALEYSIVVAATASD 196

[Close]

BLAST of CmoCh04G005320.1 vs. TrEMBL
Match: Q5F4P6_PSINU (ATP synthase subunit alpha (Fragment) OS=Psilotum nudum GN=atp1 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK---KLKTFVTYNPLNYVP 79
           P II+ K VHEPMQTGLKAVDSLVPIGRGQRELIIGDRQT K    + T +   P+N   
Sbjct: 100 PGIIARKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKPINLAQ 159

Query: 80  ICNFPSNIFLDIINL-KRRTNLSQIFSYKASRAAILH--VMASPTED 121
             +    +F   + + ++R+ ++Q+    +   A+ +  V+A+   D
Sbjct: 160 GTSDSERLFCVYVAIGQKRSTVAQLVKIPSEAGALEYSIVVAATASD 206

[Close]

BLAST of CmoCh04G005320.1 vs. TrEMBL
Match: B2VPS9_PSINU (ATP synthase subunit alpha (Fragment) OS=Psilotum nudum GN=atp1 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK---KLKTFVTYNPLNYVP 79
           P II+ K VHEPMQTGLKAVDSLVPIGRGQRELIIGDRQT K    + T +   P+N   
Sbjct: 85  PGIIARKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKPINLAQ 144

Query: 80  ICNFPSNIFLDIINL-KRRTNLSQIFSYKASRAAILH--VMASPTED 121
             +    +F   + + ++R+ ++Q+    +   A+ +  V+A+   D
Sbjct: 145 GTSDSERLFCVYVAIGQKRSTVAQLVKIPSEAGALEYSIVVAATASD 191

[Close]

BLAST of CmoCh04G005320.1 vs. TrEMBL
Match: Q5F4P7_9MONI (ATPase alpha subunit (Fragment) OS=Tmesipteris truncata GN=atp1 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.7e-12
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK---KLKTFVTYNPLNYVP 79
           P II+ K VHEPMQTGLKAVDSLVPIGRGQRELIIGDRQT K    + T +   P+N   
Sbjct: 102 PGIIARKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKPINLAQ 161

Query: 80  ICNFPSNIFLDIINL-KRRTNLSQIFSYKASRAAI 111
             +    +F   + + ++R+ ++Q+    +   A+
Sbjct: 162 GTSDSERLFCVYVAIGQKRSTVAQLVKIPSEAGAL 196

[Close]

BLAST of CmoCh04G005320.1 vs. TrEMBL
Match: A0A0F2KYF7_9PROT (ATP synthase subunit alpha OS=Azospirillum thiophilum GN=atpA PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-12
Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEKK---LKTFVTYNPLN 74
           P II  K VHEPMQTGLKAVDSLVPIGRGQRELIIGDRQT K    + TF+   P+N
Sbjct: 134 PGIIPRKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAVVIDTFLNQKPIN 190

[Close]

BLAST of CmoCh04G005320.1 vs. TAIR10
Match: AT2G07698.1 (AT2G07698.1 ATPase, F1 complex, alpha subunit protein)

HSP 1 Score: 73.9 bits (180), Expect = 9.8e-14
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK 62
           P I+  K VHEPMQTGLKAVDSLVPIGRGQREL+IGDRQT K
Sbjct: 406 PGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGK 447

[Close]

BLAST of CmoCh04G005320.1 vs. TAIR10
Match: ATMG01190.1 (ATMG01190.1 ATP synthase subunit 1)

HSP 1 Score: 71.2 bits (173), Expect = 6.3e-13
Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK 62
           P I+  K VHEPMQTGLKAVDSLVPIGRGQREL+IG RQT K
Sbjct: 136 PGILERKSVHEPMQTGLKAVDSLVPIGRGQRELLIGGRQTGK 177

[Close]

BLAST of CmoCh04G005320.1 vs. TAIR10
Match: ATCG00120.1 (ATCG00120.1 ATP synthase subunit alpha)

HSP 1 Score: 67.8 bits (164), Expect = 7.0e-12
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK 62
           P IIS + V+EP+QTGL A+DS++PIGRGQRELIIGDRQT K
Sbjct: 135 PGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGK 176

[Close]

BLAST of CmoCh04G005320.1 vs. NCBI nr
Match: gi|655971204|ref|WP_029013791.1| (ATP synthase subunit alpha [Niveispirillum irakense])

HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 7   TTILSETLNKKAHPEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK---KL 66
           T ++ + +  KA P II  K VHEPMQTGLKA+D+LVP+GRGQRELIIGDRQT K    L
Sbjct: 122 TDVVRQRVEVKA-PGIIPRKSVHEPMQTGLKAIDALVPVGRGQRELIIGDRQTGKTAIAL 181

Query: 67  KTFVTYNPLN 74
            TF+   P+N
Sbjct: 182 DTFINQKPIN 190

[Close]

BLAST of CmoCh04G005320.1 vs. NCBI nr
Match: gi|60099313|emb|CAD70261.1| (ATPase alpha subunit, partial (mitochondrion) [Psilotum nudum])

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK---KLKTFVTYNPLNYVP 79
           P II+ K VHEPMQTGLKAVDSLVPIGRGQRELIIGDRQT K    + T +   P+N   
Sbjct: 100 PGIIARKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKPINLAQ 159

Query: 80  ICNFPSNIFLDIINL-KRRTNLSQIFSYKASRAAILH--VMASPTED 121
             +    +F   + + ++R+ ++Q+    +   A+ +  V+A+   D
Sbjct: 160 GTSDSERLFCVYVAIGQKRSTVAQLVKIPSEAGALEYSIVVAATASD 206

[Close]

BLAST of CmoCh04G005320.1 vs. NCBI nr
Match: gi|655968433|ref|WP_029011041.1| (ATP synthase subunit alpha [Azospirillum halopraeferens])

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEKK---LKTFVTYNPLN 74
           P II  K VHEPMQTGLKA+DSLVP+GRGQRELIIGDRQT K    L TF+   P+N
Sbjct: 134 PGIIPRKSVHEPMQTGLKAIDSLVPVGRGQRELIIGDRQTGKTAVVLDTFINQKPIN 190

[Close]

BLAST of CmoCh04G005320.1 vs. NCBI nr
Match: gi|114216218|gb|ABI54720.1| (ATPase alpha subunit, partial (mitochondrion) [Psilotum nudum])

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK---KLKTFVTYNPLNYVP 79
           P II+ K VHEPMQTGLKAVDSLVPIGRGQRELIIGDRQT K    + T +   P+N   
Sbjct: 90  PGIIARKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKPINLAQ 149

Query: 80  ICNFPSNIFLDIINL-KRRTNLSQIFSYKASRAAILH--VMASPTED 121
             +    +F   + + ++R+ ++Q+    +   A+ +  V+A+   D
Sbjct: 150 GTSDSERLFCVYVAIGQKRSTVAQLVKIPSEAGALEYSIVVAATASD 196

[Close]

BLAST of CmoCh04G005320.1 vs. NCBI nr
Match: gi|187236929|gb|ACD02147.1| (F1-ATPase alpha subunit, partial (mitochondrion) [Psilotum nudum])

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1


Query: 20  PEIISGKFVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTEK---KLKTFVTYNPLNYVP 79
           P II+ K VHEPMQTGLKAVDSLVPIGRGQRELIIGDRQT K    + T +   P+N   
Sbjct: 85  PGIIARKSVHEPMQTGLKAVDSLVPIGRGQRELIIGDRQTGKTAIAIDTILNQKPINLAQ 144

Query: 80  ICNFPSNIFLDIINL-KRRTNLSQIFSYKASRAAILH--VMASPTED 121
             +    +F   + + ++R+ ++Q+    +   A+ +  V+A+   D
Sbjct: 145 GTSDSERLFCVYVAIGQKRSTVAQLVKIPSEAGALEYSIVVAATASD 191

The following BLAST results are available for this feature:

BLAST of CmoCh04G005320.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATPA_GRABC	9.2e-14	56.16	ATP synthase subunit alpha OS=Granulibacter bethesdensis (strain ATCC BAA-1260 /...	[more]
ATPA_CHESB	1.6e-13	68.42	ATP synthase subunit alpha OS=Chelativorans sp. (strain BNC1) GN=atpA PE=3 SV=1	[more]
ATPA_ACICJ	3.5e-13	63.16	ATP synthase subunit alpha OS=Acidiphilium cryptum (strain JF-5) GN=atpA PE=3 SV...	[more]
ATPAM_MARPO	4.6e-13	88.10	ATP synthase subunit alpha, mitochondrial OS=Marchantia polymorpha GN=ATPA PE=3 ...	[more]
ATPAM_HELAN	6.0e-13	88.10	ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1	[more]

BLAST of CmoCh04G005320.1 vs. TrEMBL


Match Name	E-value	Identity	Description
Q09QV8_PSINU	2.1e-12	43.93	ATP synthase subunit alpha (Fragment) OS=Psilotum nudum GN=atp1 PE=4 SV=1	[more]
Q5F4P6_PSINU	2.1e-12	43.93	ATP synthase subunit alpha (Fragment) OS=Psilotum nudum GN=atp1 PE=3 SV=1	[more]
B2VPS9_PSINU	2.1e-12	43.93	ATP synthase subunit alpha (Fragment) OS=Psilotum nudum GN=atp1 PE=4 SV=1	[more]
Q5F4P7_9MONI	2.7e-12	46.32	ATPase alpha subunit (Fragment) OS=Tmesipteris truncata GN=atp1 PE=4 SV=1	[more]
A0A0F2KYF7_9PROT	3.5e-12	71.93	ATP synthase subunit alpha OS=Azospirillum thiophilum GN=atpA PE=3 SV=1	[more]

BLAST of CmoCh04G005320.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07698.1	9.8e-14	83.33	ATPase, F1 complex, alpha subunit protein	[more]
ATMG01190.1	6.3e-13	80.95	ATMG01190.1 ATP synthase subunit 1	[more]
ATCG00120.1	7.0e-12	73.81	ATCG00120.1 ATP synthase subunit alpha	[more]

BLAST of CmoCh04G005320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|655971204\|ref\|WP_029013791.1\|	2.3e-12	60.00	ATP synthase subunit alpha [Niveispirillum irakense]	[more]
gi\|60099313\|emb\|CAD70261.1\|	3.0e-12	43.93	ATPase alpha subunit, partial (mitochondrion) [Psilotum nudum]	[more]
gi\|655968433\|ref\|WP_029011041.1\|	3.0e-12	70.18	ATP synthase subunit alpha [Azospirillum halopraeferens]	[more]
gi\|114216218\|gb\|ABI54720.1\|	3.0e-12	43.93	ATPase alpha subunit, partial (mitochondrion) [Psilotum nudum]	[more]
gi\|187236929\|gb\|ACD02147.1\|	3.0e-12	43.93	F1-ATPase alpha subunit, partial (mitochondrion) [Psilotum nudum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005294	ATP_synth_F1_asu
IPR027417	P-loop_NTPase

Vocabulary: **Cellular Component**
Term	Definition
GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)

Vocabulary: **Molecular Function**
Term	Definition
GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
GO:0046961	proton-transporting ATPase activity, rotational mechanism

Vocabulary: **Biological Process**
Term	Definition
GO:0015986	ATP synthesis coupled proton transport

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006119	oxidative phosphorylation
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0005524	ATP binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G005320	CmoCh04G005320	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G005320.1	CmoCh04G005320.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G005320.1.CDS.4	CmoCh04G005320.1.CDS.4	CDS
CmoCh04G005320.1.CDS.3	CmoCh04G005320.1.CDS.3	CDS
CmoCh04G005320.1.CDS.2	CmoCh04G005320.1.CDS.2	CDS
CmoCh04G005320.1.CDS.1	CmoCh04G005320.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G005320.1.exon.4	CmoCh04G005320.1.exon.4	exon
CmoCh04G005320.1.exon.3	CmoCh04G005320.1.exon.3	exon
CmoCh04G005320.1.exon.2	CmoCh04G005320.1.exon.2	exon
CmoCh04G005320.1.exon.1	CmoCh04G005320.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005294	ATPase, F1 complex, alpha subunit	PANTHER	PTHR15184:SF3	ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL	coord: 20..61 score: 5.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	G3DSA:3.40.50.300		coord: 17..61 score: 4.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 18..61 score: 1.4
None	No IPR available	PANTHER	PTHR15184	ATP SYNTHASE	coord: 20..61 score: 5.3