CmoCh03G009630.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G009630.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Formamidase-like protein
Location	Cmo_Chr03 : 7223785 .. 7224415 (-)
Sequence length	333

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGGAAAAGATAATGATCAATCCATGTTGTCTCATTCCGAGATTCAAAAGCTCCATTACCTTGTAATTCAACTGCCTAAAGAAGAACGAGGAGGAAGAAGAAGGATATGGGTGATTATGGTCCAAGGCTAGTGGTGTCTGTAGATGTGAAGAAGAACCCATGGCAACAGAAACTTCCACTTCACAACCGGTGGCACCCGGAGATACCGCCGGTGGCGGAAGTCAAGGTGGATGAGCTCTTCAAAGTCGAAATGGTGGATTTTAGTGGCGGAGCAATCACCAAAGACTACTCTGCTGAAGACGTTAAACATGCTGACAATTCCTGTGTAAGTCCTCTCTCTTACACACACACATCTTTGACTCGTCCCTGAGTTTTGTATTGGAAAAATTCACACCAGACCCAGTTGACAGAACACAATAAAGGAGCGATATTTTCAACTTAGCCTTCGGTTTGGAAATTGCGTCCTTAATGGGCAAGAAAGACAAATTAGTTTCTTGTCCTTTGTCTTATCTTTTTATCTTTTTGTGTACTTTTCAACGGTTGCTACTTCGATTAGAGGAGACTGGGGAATAAAAGAACCTAGCAGAACAAACTCAGTTTCCTAAGTTTCTGTGTACTTGTAGTCATAA

mRNA sequence

CCAAGGAAAAGATAATGATCAATCCATGTTGTCTCATTCCGAGATTCAAAAGCTCCATTACCTTGTAATTCAACTGCCTAAAGAAGAACGAGGAGGAAGAAGAAGGATATGGGTGATTATGGTCCAAGGCTAGTGGTGTCTGTAGATGTGAAGAAGAACCCATGGCAACAGAAACTTCCACTTCACAACCGGTGGCACCCGGAGATACCGCCGGTGGCGGAAGTCAAGGTGGATGAGCTCTTCAAAGTCGAAATGGTGGATTTTAGTGGCGGAGCAATCACCAAAGACTACTCTGCTGAAGACGTTAAACATGCTGACAATTCCTGTTCATAA

Coding sequence (CDS)

ATGGGTGATTATGGTCCAAGGCTAGTGGTGTCTGTAGATGTGAAGAAGAACCCATGGCAACAGAAACTTCCACTTCACAACCGGTGGCACCCGGAGATACCGCCGGTGGCGGAAGTCAAGGTGGATGAGCTCTTCAAAGTCGAAATGGTGGATTTTAGTGGCGGAGCAATCACCAAAGACTACTCTGCTGAAGACGTTAAACATGCTGACAATTCCTGTTCATAA

Homology

[Close]

BLAST of CmoCh03G009630.1 vs. Swiss-Prot
Match: FMDA_METME (Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.5e-11
Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 1


Query: 7  RLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKDYSAEDV 66
          + +V +D+ K PW+Q   +HNRWHP++P +A VK  + F+VE +D++GG I  + SA DV
Sbjct: 2  KTIVKLDLDKKPWEQDGQIHNRWHPDLPMIAMVKPGDEFRVECMDWTGGQIGNNDSANDV 61

Query: 67 KHAD 71
          +  D
Sbjct: 62 RDVD 65

[Close]

BLAST of CmoCh03G009630.1 vs. Swiss-Prot
Match: FMDA_SCHPO (Putative formamidase C869.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.04 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.6e-11
Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1


Query: 6  PRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKDYSAED 65
          PR +V VD+ K  W+Q   LHNRWHP+IP    +   E  K+E +D++GG I  D SAED
Sbjct: 3  PRTIVKVDLNKPAWEQP-NLHNRWHPDIPFAESIDEGETVKIECLDWTGGQIKNDDSAED 62

Query: 66 VKHAD 71
          +K+ D
Sbjct: 63 IKNVD 66

[Close]

BLAST of CmoCh03G009630.1 vs. Swiss-Prot
Match: AMDA_MYCSM (Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=1 SV=2)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-08
Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 1


Query: 6  PRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKDYSAED 65
          P +V SVD  K+   Q +P HNRWHP+IP  A VK    F++E  +++ G I  + SA D
Sbjct: 2  PEVVFSVDHSKSMRDQAVPGHNRWHPDIPAAATVKPGSEFRIECKEWTDGQIGNNDSAND 61

Query: 66 VKHAD 71
          V+  D
Sbjct: 62 VRDVD 66

[Close]

BLAST of CmoCh03G009630.1 vs. TrEMBL
Match: A0A0A0KGH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495030 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.4e-27
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1


Query: 1  MGD--YGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAIT 60
          MGD  YGPRLVV +D+KK PWQQ+ PLHNRWHPEIPPVAEVKV E F+VEMVDFSGG IT
Sbjct: 1  MGDSGYGPRLVVPIDLKKKPWQQEFPLHNRWHPEIPPVAEVKVAEFFRVEMVDFSGGGIT 60

Query: 61 KDYSAEDVKHADNS 73
          +DYSA+D+KH DNS
Sbjct: 61 QDYSADDIKHVDNS 74

[Close]

BLAST of CmoCh03G009630.1 vs. TrEMBL
Match: F6HSU2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g00320 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.2e-27
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MGDYGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKD 60
          M +YGPRLVV +DVKK PW+QKLPLHNRWHPEIPPV EV+  E+F+VEMVDFSGG ITKD
Sbjct: 1  MANYGPRLVVPIDVKKKPWEQKLPLHNRWHPEIPPVDEVRCGEVFRVEMVDFSGGGITKD 60

Query: 61 YSAEDVKHADNS 73
          YSAED+K+AD S
Sbjct: 61 YSAEDIKYADPS 72

[Close]

BLAST of CmoCh03G009630.1 vs. TrEMBL
Match: M5WHX3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005607mg PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-26
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MGDYGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKD 60
          M  YGPRLVV +DVKK PW+QKLPLHNRWHP+IPPVAEV V ++F+VEMVDFSGG ITK+
Sbjct: 1  MASYGPRLVVPIDVKKKPWEQKLPLHNRWHPDIPPVAEVTVGDVFRVEMVDFSGGGITKE 60

Query: 61 YSAEDVKHADNS 73
          Y+AED+KHA+ S
Sbjct: 61 YTAEDIKHANPS 72

[Close]

BLAST of CmoCh03G009630.1 vs. TrEMBL
Match: B9H6M1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18890g PE=4 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 8.3e-25
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MGDYGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKD 60
          M  +G RLV  +DVKK PW+QKLPLHNRWHP+IPPVAEV V ELF+VEMVDFSGG ITK+
Sbjct: 1  MEQHGARLVFPIDVKKKPWEQKLPLHNRWHPDIPPVAEVTVGELFRVEMVDFSGGRITKE 60

Query: 61 YSAEDVKHADNS 73
          YSAED+K+AD S
Sbjct: 61 YSAEDIKNADPS 72

[Close]

BLAST of CmoCh03G009630.1 vs. TrEMBL
Match: B9H6M2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18890g PE=4 SV=2)

HSP 1 Score: 120.6 bits (301), Expect = 8.3e-25
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 1


Query: 1  MGDYGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKD 60
          M  +G RLV  +DVKK PW+QKLPLHNRWHP+IPPVAEV V ELF+VEMVDFSGG ITK+
Sbjct: 1  MEQHGARLVFPIDVKKKPWEQKLPLHNRWHPDIPPVAEVTVGELFRVEMVDFSGGRITKE 60

Query: 61 YSAEDVKHADNS 73
          YSAED+K+AD S
Sbjct: 61 YSAEDIKNADPS 72

[Close]

BLAST of CmoCh03G009630.1 vs. TAIR10
Match: AT4G37560.1 (AT4G37560.1 Acetamidase/Formamidase family protein)

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-22
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1


Query: 1  MGDYGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKD 60
          M    PR+VV VD+KK PWQQ  PLHNRWHPEIP VAEVK  ELF+VEMVD++GGA+ +D
Sbjct: 1  MAPASPRVVVKVDLKKRPWQQTQPLHNRWHPEIPSVAEVKTGELFRVEMVDWTGGAVKED 60

Query: 61 YSAEDVKHADNS 73
           SA D+K  D S
Sbjct: 61 GSAGDIKSIDLS 72

[Close]

BLAST of CmoCh03G009630.1 vs. TAIR10
Match: AT4G37550.1 (AT4G37550.1 Acetamidase/Formamidase family protein)

HSP 1 Score: 98.2 bits (243), Expect = 2.2e-21
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1


Query: 1  MGDYGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKD 60
          M    PR+VV VD+KK PWQQ  PLHNRWHPEIPPVAEVK  E F+VEM+D  GG I  +
Sbjct: 1  MAPLSPRVVVKVDLKKKPWQQDQPLHNRWHPEIPPVAEVKAGEFFRVEMIDAMGGVIKDN 60

Query: 61 YSAEDVKH 69
           SA D+K+
Sbjct: 61 DSASDIKN 68

[Close]

BLAST of CmoCh03G009630.1 vs. NCBI nr
Match: gi|659079645|ref|XP_008440367.1| (PREDICTED: putative formamidase C869.04 isoform X2 [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1


Query: 1  MGD--YGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAIT 60
          MGD  YGPR+VV +D+KK PWQQK PLHNRWHPEIPP AEVKV E F++EMVDFSGG IT
Sbjct: 1  MGDSGYGPRIVVPIDLKKKPWQQKFPLHNRWHPEIPPAAEVKVAEFFRIEMVDFSGGGIT 60

Query: 61 KDYSAEDVKHADNS 73
          KDYSA+D+KH DNS
Sbjct: 61 KDYSADDIKHVDNS 74

[Close]

BLAST of CmoCh03G009630.1 vs. NCBI nr
Match: gi|778718613|ref|XP_011657890.1| (PREDICTED: putative formamidase C869.04 isoform X2 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.0e-27
Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1


Query: 1  MGD--YGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAIT 60
          MGD  YGPRLVV +D+KK PWQQ+ PLHNRWHPEIPPVAEVKV E F+VEMVDFSGG IT
Sbjct: 1  MGDSGYGPRLVVPIDLKKKPWQQEFPLHNRWHPEIPPVAEVKVAEFFRVEMVDFSGGGIT 60

Query: 61 KDYSAEDVKHADNS 73
          +DYSA+D+KH DNS
Sbjct: 61 QDYSADDIKHVDNS 74

[Close]

BLAST of CmoCh03G009630.1 vs. NCBI nr
Match: gi|225438970|ref|XP_002284306.1| (PREDICTED: putative formamidase C869.04 isoform X1 [Vitis vinifera])

HSP 1 Score: 127.9 bits (320), Expect = 7.5e-27
Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MGDYGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKD 60
          M +YGPRLVV +DVKK PW+QKLPLHNRWHPEIPPV EV+  E+F+VEMVDFSGG ITKD
Sbjct: 1  MANYGPRLVVPIDVKKKPWEQKLPLHNRWHPEIPPVDEVRCGEVFRVEMVDFSGGGITKD 60

Query: 61 YSAEDVKHADNS 73
          YSAED+K+AD S
Sbjct: 61 YSAEDIKYADPS 72

[Close]

BLAST of CmoCh03G009630.1 vs. NCBI nr
Match: gi|645219962|ref|XP_008238118.1| (PREDICTED: putative formamidase C869.04 isoform X1 [Prunus mume])

HSP 1 Score: 125.9 bits (315), Expect = 2.8e-26
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1   MGDYGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKD 60
           M  YGPRLVV +DVKK PW+QKLPLHNRWHP+IPPVAEV V ++F+VEMVDFSGG ITK+
Sbjct: 36  MASYGPRLVVPIDVKKKPWEQKLPLHNRWHPDIPPVAEVTVGDVFRVEMVDFSGGGITKE 95

Query: 61  YSAEDVKHADNS 73
           Y+AED+KHA+ S
Sbjct: 96  YTAEDIKHANPS 107

[Close]

BLAST of CmoCh03G009630.1 vs. NCBI nr
Match: gi|595824090|ref|XP_007205181.1| (hypothetical protein PRUPE_ppa005607mg [Prunus persica])

HSP 1 Score: 125.9 bits (315), Expect = 2.8e-26
Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 1


Query: 1  MGDYGPRLVVSVDVKKNPWQQKLPLHNRWHPEIPPVAEVKVDELFKVEMVDFSGGAITKD 60
          M  YGPRLVV +DVKK PW+QKLPLHNRWHP+IPPVAEV V ++F+VEMVDFSGG ITK+
Sbjct: 1  MASYGPRLVVPIDVKKKPWEQKLPLHNRWHPDIPPVAEVTVGDVFRVEMVDFSGGGITKE 60

Query: 61 YSAEDVKHADNS 73
          Y+AED+KHA+ S
Sbjct: 61 YTAEDIKHANPS 72

The following BLAST results are available for this feature:

BLAST of CmoCh03G009630.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FMDA_METME	1.5e-11	43.75	Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1	[more]
FMDA_SCHPO	2.6e-11	47.69	Putative formamidase C869.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
AMDA_MYCSM	2.0e-08	43.08	Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=1 SV=2	[more]

BLAST of CmoCh03G009630.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGH0_CUCSA	1.4e-27	78.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495030 PE=4 SV=1	[more]
F6HSU2_VITVI	5.2e-27	77.78	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g00320 PE=4 SV=...	[more]
M5WHX3_PRUPE	2.0e-26	75.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005607mg PE=4 SV=1	[more]
B9H6M1_POPTR	8.3e-25	75.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18890g PE=4 SV=2	[more]
B9H6M2_POPTR	8.3e-25	75.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18890g PE=4 SV=2	[more]

BLAST of CmoCh03G009630.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37560.1	1.2e-22	65.28	Acetamidase/Formamidase family protein	[more]
AT4G37550.1	2.2e-21	63.24	Acetamidase/Formamidase family protein	[more]

BLAST of CmoCh03G009630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659079645\|ref\|XP_008440367.1\|	1.5e-27	77.03	PREDICTED: putative formamidase C869.04 isoform X2 [Cucumis melo]	[more]
gi\|778718613\|ref\|XP_011657890.1\|	2.0e-27	78.38	PREDICTED: putative formamidase C869.04 isoform X2 [Cucumis sativus]	[more]
gi\|225438970\|ref\|XP_002284306.1\|	7.5e-27	77.78	PREDICTED: putative formamidase C869.04 isoform X1 [Vitis vinifera]	[more]
gi\|645219962\|ref\|XP_008238118.1\|	2.8e-26	75.00	PREDICTED: putative formamidase C869.04 isoform X1 [Prunus mume]	[more]
gi\|595824090\|ref\|XP_007205181.1\|	2.8e-26	75.00	hypothetical protein PRUPE_ppa005607mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004304	FmdA_AmdA

Vocabulary: **Molecular Function**
Term	Definition
GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006568	tryptophan metabolic process
biological_process	GO:0046487	glyoxylate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides
molecular_function	GO:0004328	formamidase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh03G009630	CmoCh03G009630	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh03G009630.1	CmoCh03G009630.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G009630.1.CDS.2	CmoCh03G009630.1.CDS.2	CDS
CmoCh03G009630.1.CDS.1	CmoCh03G009630.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G009630.1.five_prime_UTR.1	CmoCh03G009630.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G009630.1.exon.2	CmoCh03G009630.1.exon.2	exon
CmoCh03G009630.1.exon.1	CmoCh03G009630.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004304	Acetamidase/Formamidase	PFAM	PF03069	FmdA_AmdA	coord: 12..70 score: 1.4
None	No IPR available	GENE3D	G3DSA:2.60.120.580		coord: 9..59 score: 2.4
None	No IPR available	PANTHER	PTHR31891	FAMILY NOT NAMED	coord: 2..72 score: 1.1
None	No IPR available	PANTHER	PTHR31891:SF1	ACETAMIDASE/FORMAMIDASE FAMILY PROTEIN	coord: 2..72 score: 1.1