CmoCh02G006870.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G006870.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ethylene-responsive transcription factor, putative
Location	Cmo_Chr02 : 4350080 .. 4350841 (-)
Sequence length	762

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGTGGGAGAAATGGGTTTTTTTCCAGAGCGTAGAATCAACCACCGTCGGAAACCGCCAAGTTCCGGCGACTCTCTGGAACTACAGCAGAAGCTTGTTAGGATCATCGTTACCGACGCCGATGCCACGGATTCATCCAGTGATGATGAAATGGTTTCCGGCTCAACAAAAGGAATTAGGAGACAAGTTAGAGAGATTCCTATTGGATGTTACTCTGTTTTTTATGGTTCATCAGAGTCCCCTGTTCCGGCGATTAGCAAGAAACGAAGCACTCGATCCCAAAGCTCCAAATCCTTTCACCGGAAGAAGTTCAGAGGAGTCCGGCAGCGTCCGTGGGGTCGGTGGGCGGCGGAAATCCGAGATCCGACTCGTAGGAAGCGGATATGGCTCGGAACCTTCAATACGGCGGAGGAGGCAGCGGCTGTTTACGACCGAGCTGCTCTGAAACTCCACGGCCCAAACGCCGAGACGAACTTCCCCGATGAGGGTGAGGTTTCCACGGCGGCCAAGGGCGGTAACAAGCAGGAGGACGGATTGAAGTCGCCGAAAACGACGGCGGTTTGGTCACCGGCGTCTGTTCTTCATTATGACGGCGCTTTACCTCTGATTGATGAGATGTTTTGCAGAGAGATTGATGAGTTCGAATTCAACATGGAGGCGGTGGCAAGATTGCCGGCGGCGAGGAGGCAGTGCGGCGGCGAAGAAGATTTCGGGGAGGTAGAGCTGGACTTGGACTATTTCTTGGTTGACGTCCTCTAA

mRNA sequence

ATGTCTGTGGGAGAAATGGGTTTTTTTCCAGAGCGTAGAATCAACCACCGTCGGAAACCGCCAAGTTCCGGCGACTCTCTGGAACTACAGCAGAAGCTTGTTAGGATCATCGTTACCGACGCCGATGCCACGGATTCATCCAGTGATGATGAAATGGTTTCCGGCTCAACAAAAGGAATTAGGAGACAAGTTAGAGAGATTCCTATTGGATGTTACTCTGTTTTTTATGGTTCATCAGAGTCCCCTGTTCCGGCGATTAGCAAGAAACGAAGCACTCGATCCCAAAGCTCCAAATCCTTTCACCGGAAGAAGTTCAGAGGAGTCCGGCAGCGTCCGTGGGGTCGGTGGGCGGCGGAAATCCGAGATCCGACTCGTAGGAAGCGGATATGGCTCGGAACCTTCAATACGGCGGAGGAGGCAGCGGCTGTTTACGACCGAGCTGCTCTGAAACTCCACGGCCCAAACGCCGAGACGAACTTCCCCGATGAGGGTGAGGTTTCCACGGCGGCCAAGGGCGGTAACAAGCAGGAGGACGGATTGAAGTCGCCGAAAACGACGGCGGTTTGGTCACCGGCGTCTGTTCTTCATTATGACGGCGCTTTACCTCTGATTGATGAGATGTTTTGCAGAGAGATTGATGAGTTCGAATTCAACATGGAGGCGGTGGCAAGATTGCCGGCGGCGAGGAGGCAGTGCGGCGGCGAAGAAGATTTCGGGGAGGTAGAGCTGGACTTGGACTATTTCTTGGTTGACGTCCTCTAA

Coding sequence (CDS)

ATGTCTGTGGGAGAAATGGGTTTTTTTCCAGAGCGTAGAATCAACCACCGTCGGAAACCGCCAAGTTCCGGCGACTCTCTGGAACTACAGCAGAAGCTTGTTAGGATCATCGTTACCGACGCCGATGCCACGGATTCATCCAGTGATGATGAAATGGTTTCCGGCTCAACAAAAGGAATTAGGAGACAAGTTAGAGAGATTCCTATTGGATGTTACTCTGTTTTTTATGGTTCATCAGAGTCCCCTGTTCCGGCGATTAGCAAGAAACGAAGCACTCGATCCCAAAGCTCCAAATCCTTTCACCGGAAGAAGTTCAGAGGAGTCCGGCAGCGTCCGTGGGGTCGGTGGGCGGCGGAAATCCGAGATCCGACTCGTAGGAAGCGGATATGGCTCGGAACCTTCAATACGGCGGAGGAGGCAGCGGCTGTTTACGACCGAGCTGCTCTGAAACTCCACGGCCCAAACGCCGAGACGAACTTCCCCGATGAGGGTGAGGTTTCCACGGCGGCCAAGGGCGGTAACAAGCAGGAGGACGGATTGAAGTCGCCGAAAACGACGGCGGTTTGGTCACCGGCGTCTGTTCTTCATTATGACGGCGCTTTACCTCTGATTGATGAGATGTTTTGCAGAGAGATTGATGAGTTCGAATTCAACATGGAGGCGGTGGCAAGATTGCCGGCGGCGAGGAGGCAGTGCGGCGGCGAAGAAGATTTCGGGGAGGTAGAGCTGGACTTGGACTATTTCTTGGTTGACGTCCTCTAA

Homology

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BLAST of CmoCh02G006870.1 vs. Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-37
Identity = 102/227 (44.93%), Postives = 135/227 (59.47%), Query Frame = 1


Query: 31  QKLVRIIVTDADATDSSSDDEMVSGSTKGIRRQVREIPIGCYSVFYGSSESPVPAISKKR 90
           Q++VRII+TDADATDSS D+     + + ++R V EI +   +   G          +KR
Sbjct: 35  QRVVRIILTDADATDSSDDEGR--NTVRRVKRHVTEINLMPSTKSIGD---------RKR 94

Query: 91  STRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTRRKRIWLGTFNTAEEAAAVYDRAALK 150
            + S  S    RKKFRGVRQRPWGRWAAEIRDPTR KR+WLGT++T EEAA VYD+AA+K
Sbjct: 95  RSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAVVYDKAAVK 154

Query: 151 LHGPNAETNFP-----------DEGEVSTAAKGGNKQEDGLKSPKTTAVWSPASVLHYDG 210
           L GP+A TNFP            E E  + A GG+K E+ +         SP SVL  + 
Sbjct: 155 LKGPDAVTNFPVSTTAEVTVTVTETETESVADGGDKSENDV-------ALSPTSVLCDND 214

Query: 211 ALPLIDEMFCREIDEFEFNMEAVARLP--AARRQCGGEEDFGEVELD 245
             P  +  FC E+D F F+++++ RLP  A   +  G+E FGE + D
Sbjct: 215 FAPFDNLGFC-EVDAFGFDVDSLFRLPDFAMTEKYYGDE-FGEFDFD 241

[Close]

BLAST of CmoCh02G006870.1 vs. Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-28
Identity = 78/177 (44.07%), Postives = 105/177 (59.32%), Query Frame = 1


Query: 32  KLVRIIVTDADATDSSSDDEMVSGSTKGIRRQVREIPIGCYSVFYGSSESPVPAISKKR- 91
           +LVR+ +TD DATDSSSD+E      + ++R + EI +   S   G   S  P   +KR 
Sbjct: 41  RLVRVSMTDRDATDSSSDEEEFLFPRRRVKRLINEIRVEPSSSSTGDV-SASPTKDRKRI 100

Query: 92  ----STRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTRRKRIWLGTFNTAEEAAAVYDR 151
               + +  S    ++KK+RGVRQRPWG+WAAEIRDP +R+RIWLGTF TAEEAA VYD 
Sbjct: 101 NVDSTVQKPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDN 160

Query: 152 AALKLHGPNAETNFPDEGEVSTAAKGGNKQEDGL------KSPKTTAVWSPASVLHY 198
           AA+KL GP+A TNF  + E     +   + E  +          +  + SP SVL+Y
Sbjct: 161 AAIKLRGPDALTNFTVQPEPEPVQEQEQEPESNMSVSISESMDDSQHLSSPTSVLNY 216

[Close]

BLAST of CmoCh02G006870.1 vs. Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 7.9e-28
Identity = 82/199 (41.21%), Postives = 108/199 (54.27%), Query Frame = 1


Query: 30  QQKLVRIIVTDADATDSSSDDEMVS-----GSTKGIRRQVREIPIGCYSVFYGSSESPVP 89
           Q +++RI VTD DATDSSSDDE           + +++ V E+ +   +V  GS      
Sbjct: 33  QTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKFVNEVYLDSGAVVTGSCGQMES 92

Query: 90  AISKKRSTRSQSSKS---------FHRKKFRGVRQRPWGRWAAEIRDPTRRKRIWLGTFN 149
              +KR+ +S+S+ S            KKFRGVRQRPWG+WAAEIRDP +R R+WLGT+N
Sbjct: 93  KKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYN 152

Query: 150 TAEEAAAVYDRAALKLHGPNAETNF------------PDEGEVSTAAKGGNKQEDGL--- 196
           TAEEAA VYD AA++L GP+A TNF            P    V    K  NK +  +   
Sbjct: 153 TAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEKKAPPPSPVKKKKKKNNKSKKSVTAS 212

[Close]

BLAST of CmoCh02G006870.1 vs. Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.0e-27
Identity = 73/153 (47.71%), Postives = 95/153 (62.09%), Query Frame = 1


Query: 32  KLVRIIVTDADATDSSSDDE------MVSGSTKGIRRQVREIPIGCYSVFYGSSESPVPA 91
           +++RI VTD  ATDSSSD+E       +S   + +++ V+E+ +          E P+  
Sbjct: 11  RILRISVTDPYATDSSSDEEEEVDFDALSTKRRRVKKYVKEVVLDSV---VSDKEKPMKK 70

Query: 92  ISKKRSTRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTRRKRIWLGTFNTAEEAAAVYD 151
             KKR        +   +KFRGVRQRPWG+WAAEIRDP+RR R+WLGTF+TAEEAA VYD
Sbjct: 71  KRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYD 130

Query: 152 RAALKLHGPNAETNFP------DEGEVSTAAKG 173
            AA++L GPNAE NFP      +  E ST  KG
Sbjct: 131 NAAIQLRGPNAELNFPPPPVTENVEEASTEVKG 160

[Close]

BLAST of CmoCh02G006870.1 vs. Swiss-Prot
Match: CRF3_ARATH (Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=1 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.8e-27
Identity = 82/163 (50.31%), Postives = 99/163 (60.74%), Query Frame = 1


Query: 22  SSGDSLELQQKLVRIIVTDADATDSSSDD--EMVSGSTKGIRRQVREIPI--GCYSVFYG 81
           S G SL    K V I  TD DATDSSSD+  E      + ++R V EI +   C +V  G
Sbjct: 31  SGGKSL----KKVSICYTDPDATDSSSDEDEEDFLFPRRRVKRFVNEITVEPSCNNVVTG 90

Query: 82  ------------SSESPVPAISKKRSTRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTR 141
                       S E+  PA S++R   ++ S S   KKFRGVRQRPWG+WAAEIRDP +
Sbjct: 91  VSMKDRKRLSSSSDETQSPASSRQRPN-NKVSVSGQIKKFRGVRQRPWGKWAAEIRDPEQ 150

Query: 142 RKRIWLGTFNTAEEAAAVYDRAALKLHGPNAETNF---PDEGE 166
           R+RIWLGTF TAEEAA VYD AA++L GP+A TNF   P E E
Sbjct: 151 RRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIPPQEEE 188

[Close]

BLAST of CmoCh02G006870.1 vs. TrEMBL
Match: A0A0A0KB59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133770 PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.6e-75
Identity = 161/263 (61.22%), Postives = 194/263 (73.76%), Query Frame = 1


Query: 1   MSVGEMGFFPERRINHRRKPPSSGDSLELQQKLVRIIVTDADATDSSSDDEMVSGSTKGI 60
           MSVG+M      + N RRK  +SG+S +  Q+L+RIIVTDADATDSSS+DE++ GS   I
Sbjct: 19  MSVGDMASLSGHKTNCRRKALTSGESTKPNQRLLRIIVTDADATDSSSEDELILGSRTAI 78

Query: 61  RRQVREIPIGCYSVFYGSS-ESPVPAISKKRSTRSQ-SSKSFHRKKFRGVRQRPWGRWAA 120
           RRQVREI I  YSV   SS +SPV  I KKR+ RS+ S+ S  R KFRGVRQRPWGRWAA
Sbjct: 79  RRQVREITIKRYSVPDSSSPKSPVSEICKKRNPRSRRSNNSCRRNKFRGVRQRPWGRWAA 138

Query: 121 EIRDPTRRKRIWLGTFNTAEEAAAVYDRAALKLHGPNAETNFPDEGEVSTAAKGGNKQED 180
           E+RDP  RKRIWLGTF+TAEEAAAVYDRAA++L GPNA TNF  +G V +A +G +K+E+
Sbjct: 139 EVRDPILRKRIWLGTFDTAEEAAAVYDRAAIELQGPNAATNFSGDGAVKSAVEGSSKEEE 198

Query: 181 -------GLKSPKTTAVWSPASVLHYDGALPLIDEM-FCREIDEFEFNMEAVARLPAARR 240
                  G++S KTTA WSP SVLHYD  L  I+EM +C E+DE    + A A LP ARR
Sbjct: 199 EEEEEEGGVESRKTTAAWSPTSVLHYDSFLTPIEEMGYCGEVDELGLEIGA-ASLPTARR 258

Query: 241 QCGGEEDFGEVELDLDYFLVDVL 254
           Q GGEE+ GE+ELDLDYFLVDV+
Sbjct: 259 QYGGEEELGEIELDLDYFLVDVI 280

[Close]

BLAST of CmoCh02G006870.1 vs. TrEMBL
Match: F6GU77_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08190 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.5e-41
Identity = 110/223 (49.33%), Postives = 135/223 (60.54%), Query Frame = 1


Query: 29  LQQKLVRIIVTDADATDSSSDDEMVSGSTKGIRRQVREIPIGCYSVFYGSSESPVPAISK 88
           ++ ++VRII TD DATDSSSDDE+     + ++R V EI +        S ESP    +K
Sbjct: 52  VRHRVVRIIHTDGDATDSSSDDEVEL--VQRVKRHVTEISL------QPSVESPQKEPTK 111

Query: 89  KRSTRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTRRKRIWLGTFNTAEEAAAVYDRAA 148
           KR  R   S+S  RKKFRGVRQRPWGRWAAEIRDPTRRKR+WLGT++T EEAA VYD+AA
Sbjct: 112 KRVLRLPESESTRRKKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTYDTPEEAARVYDKAA 171

Query: 149 LKLHGPNAETNFPDEGEVSTAAKGGNKQEDGLKSPKTTAVWSPASVLHYDGALPLIDEMF 208
           + L GPNA TNFP   +  + A  G  Q +    P  TA  SP SVL Y+   P     +
Sbjct: 172 VSLKGPNAVTNFPSVVKTESVATAGQSQSETCSLPSVTAS-SPTSVLRYNEEAPFNGFGY 231

Query: 209 CREIDEFEFNMEAVARLPAARRQCGGEED-FGEVELDLDYFLV 251
           C ++D F F+ +    LP        EED FG  E D D FLV
Sbjct: 232 C-DVDAFGFDFDVPLTLPDIFSNKHLEEDEFG--EFDPDDFLV 262

[Close]

BLAST of CmoCh02G006870.1 vs. TrEMBL
Match: A0A0K0NKZ3_CARPA (AP2/ERF transcription factor ERF5 OS=Carica papaya PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.0e-39
Identity = 111/248 (44.76%), Postives = 149/248 (60.08%), Query Frame = 1


Query: 20  PPSSGDSLELQQKLVRIIVTDADATDSSSDDEMVS-GSTKGIRRQVREIPIGCYSV---F 79
           PP+     +++++ V+II+TDADATDSSS+DE    G  + ++RQV+ I     S     
Sbjct: 24  PPADA---KVRRRRVQIILTDADATDSSSEDEEERHGFLRRVKRQVQVITFDSSSTPDPH 83

Query: 80  YGSSESPVPAIS--------KKRSTRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTRRK 139
              S +P+PA +        ++R +R   S     +KFRGVRQRPWG+WAAEIRDP +RK
Sbjct: 84  PPRSPTPLPAPTTLPKQKSPRRRPSRVTKSDVSRGQKFRGVRQRPWGKWAAEIRDPAQRK 143

Query: 140 RIWLGTFNTAEEAAAVYDRAALKLHGPNAETNFPDEGEVSTAAKGGNKQEDGLKSPKTTA 199
           RIWLGTFNTAEEAAAVYD AALK  G +A TNFP+       A   + Q+DG  S  +TA
Sbjct: 144 RIWLGTFNTAEEAAAVYDEAALKFKGSDAVTNFPNPSVTELTAV--DSQKDGFDS-SSTA 203

Query: 200 VWSPASVLHYDGALPLIDEMFCREIDEFEFNMEAVARLP--AARRQCGGEEDFGEVELDL 254
             SP SVL Y+   P     +C ++D F F ++A   +P      +   EE+FG  ELD+
Sbjct: 204 TSSPTSVLRYEEITPFDGLNYC-DVDTFGFGIDAALSVPDFMFSGKSFAEEEFG--ELDV 262

[Close]

BLAST of CmoCh02G006870.1 vs. TrEMBL
Match: M5WFF2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025495mg PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 3.8e-37
Identity = 113/250 (45.20%), Postives = 140/250 (56.00%), Query Frame = 1


Query: 29  LQQKLVRIIVTDADATDSSSDDEMVSGSTKGIRRQVREIPIGCYSVFYGSSESPVPAIS- 88
           L  KLVRII+TDADATDSSSD+E      + ++R VR+I +   S    SS S   + S 
Sbjct: 41  LPPKLVRIILTDADATDSSSDEE--DSGVRRVKRHVRQISLELSSPSSSSSPSSSSSSSF 100

Query: 89  ---------------KKRSTRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTRRKRIWLG 148
                          KK  +RS  S      KFRGVR+RPWGRWAAEIRDPTRRKR+WLG
Sbjct: 101 SSGHSKRLRKDQRPTKKLGSRSPGSDQTRLNKFRGVRRRPWGRWAAEIRDPTRRKRVWLG 160

Query: 149 TFNTAEEAAAVYDRAALKLHGPNAETNFPD----EGEVSTAAKGGNKQED-GLKSP-KTT 208
           TF+TAEEAA VYDRAA+ L GP+A TNFP+    E +V T       +E  G  SP    
Sbjct: 161 TFDTAEEAATVYDRAAVLLKGPDAVTNFPNAAMTEAKVVTDVVVPAAEESYGCGSPTPNE 220

Query: 209 AVWSPASVLHYDGALPLIDEMFCREIDEFEFNMEAVARLP---AARRQCGGEEDFGEVEL 254
           A  SP SVL YD   P  D     E+D F F+++    LP    +       ++FG  E 
Sbjct: 221 AATSPTSVLRYDELTP-FDGFSYGEVDAFGFDIDLPLSLPDIMLSNNNNFAHDEFG--EF 280

[Close]

BLAST of CmoCh02G006870.1 vs. TrEMBL
Match: M1CZU0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030472 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 5.0e-37
Identity = 105/227 (46.26%), Postives = 135/227 (59.47%), Query Frame = 1


Query: 31  QKLVRIIVTDADATDSSSDDEMVSGSTKGIRRQVREIPIGCYSVFYGSSESPVPAISKKR 90
           Q++VRII+TDADATDSS D+     + + ++R V EI +           SP     +KR
Sbjct: 35  QRVVRIILTDADATDSSDDEGR--NTVRRVKRHVTEINL---------MPSPKSIGDRKR 94

Query: 91  STRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTRRKRIWLGTFNTAEEAAAVYDRAALK 150
            + S  S    RKKFRGVRQRPWGRWAAEIRDPTR KR+WLGT++T EEAA VYD+AA+K
Sbjct: 95  RSVSPDSDVTRRKKFRGVRQRPWGRWAAEIRDPTRGKRVWLGTYDTPEEAAIVYDKAAVK 154

Query: 151 LHGPNAETNFP-----------DEGEVSTAAKGGNKQEDGLKSPKTTAVWSPASVLHYDG 210
           L GP+A TNFP            E E  + A GG+K E+ +         SP SVL  D 
Sbjct: 155 LKGPDAVTNFPVSTTAEVTVTVTETETESVADGGDKSENDV-------ALSPTSVLCNDD 214

Query: 211 ALPLIDEMFCREIDEFEFNMEAVARLP--AARRQCGGEEDFGEVELD 245
             P  +  FC E+D F F+++++ RLP  A   +  GEE FGE + D
Sbjct: 215 FAPFDNLGFC-EVDAFGFDVDSLFRLPDFAMTEKYYGEE-FGEFDFD 241

[Close]

BLAST of CmoCh02G006870.1 vs. TAIR10
Match: AT4G27950.1 (AT4G27950.1 cytokinin response factor 4)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-29
Identity = 78/177 (44.07%), Postives = 105/177 (59.32%), Query Frame = 1


Query: 32  KLVRIIVTDADATDSSSDDEMVSGSTKGIRRQVREIPIGCYSVFYGSSESPVPAISKKR- 91
           +LVR+ +TD DATDSSSD+E      + ++R + EI +   S   G   S  P   +KR 
Sbjct: 41  RLVRVSMTDRDATDSSSDEEEFLFPRRRVKRLINEIRVEPSSSSTGDV-SASPTKDRKRI 100

Query: 92  ----STRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTRRKRIWLGTFNTAEEAAAVYDR 151
               + +  S    ++KK+RGVRQRPWG+WAAEIRDP +R+RIWLGTF TAEEAA VYD 
Sbjct: 101 NVDSTVQKPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDN 160

Query: 152 AALKLHGPNAETNFPDEGEVSTAAKGGNKQEDGL------KSPKTTAVWSPASVLHY 198
           AA+KL GP+A TNF  + E     +   + E  +          +  + SP SVL+Y
Sbjct: 161 AAIKLRGPDALTNFTVQPEPEPVQEQEQEPESNMSVSISESMDDSQHLSSPTSVLNY 216

[Close]

BLAST of CmoCh02G006870.1 vs. TAIR10
Match: AT4G23750.1 (AT4G23750.1 cytokinin response factor 2)

HSP 1 Score: 125.6 bits (314), Expect = 4.5e-29
Identity = 82/199 (41.21%), Postives = 108/199 (54.27%), Query Frame = 1


Query: 30  QQKLVRIIVTDADATDSSSDDEMVS-----GSTKGIRRQVREIPIGCYSVFYGSSESPVP 89
           Q +++RI VTD DATDSSSDDE           + +++ V E+ +   +V  GS      
Sbjct: 33  QTRILRISVTDPDATDSSSDDEEEEHQRFVSKRRRVKKFVNEVYLDSGAVVTGSCGQMES 92

Query: 90  AISKKRSTRSQSSKS---------FHRKKFRGVRQRPWGRWAAEIRDPTRRKRIWLGTFN 149
              +KR+ +S+S+ S            KKFRGVRQRPWG+WAAEIRDP +R R+WLGT+N
Sbjct: 93  KKRQKRAVKSESTVSPVVSATTTTTGEKKFRGVRQRPWGKWAAEIRDPLKRVRLWLGTYN 152

Query: 150 TAEEAAAVYDRAALKLHGPNAETNF------------PDEGEVSTAAKGGNKQEDGL--- 196
           TAEEAA VYD AA++L GP+A TNF            P    V    K  NK +  +   
Sbjct: 153 TAEEAAMVYDNAAIQLRGPDALTNFSVTPTTATEKKAPPPSPVKKKKKKNNKSKKSVTAS 212

[Close]

BLAST of CmoCh02G006870.1 vs. TAIR10
Match: AT4G11140.1 (AT4G11140.1 cytokinin response factor 1)

HSP 1 Score: 125.2 bits (313), Expect = 5.8e-29
Identity = 73/153 (47.71%), Postives = 95/153 (62.09%), Query Frame = 1


Query: 32  KLVRIIVTDADATDSSSDDE------MVSGSTKGIRRQVREIPIGCYSVFYGSSESPVPA 91
           +++RI VTD  ATDSSSD+E       +S   + +++ V+E+ +          E P+  
Sbjct: 11  RILRISVTDPYATDSSSDEEEEVDFDALSTKRRRVKKYVKEVVLDSV---VSDKEKPMKK 70

Query: 92  ISKKRSTRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTRRKRIWLGTFNTAEEAAAVYD 151
             KKR        +   +KFRGVRQRPWG+WAAEIRDP+RR R+WLGTF+TAEEAA VYD
Sbjct: 71  KRKKRVVTVPVVVTTATRKFRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYD 130

Query: 152 RAALKLHGPNAETNFP------DEGEVSTAAKG 173
            AA++L GPNAE NFP      +  E ST  KG
Sbjct: 131 NAAIQLRGPNAELNFPPPPVTENVEEASTEVKG 160

[Close]

BLAST of CmoCh02G006870.1 vs. TAIR10
Match: AT5G53290.1 (AT5G53290.1 cytokinin response factor 3)

HSP 1 Score: 122.1 bits (305), Expect = 5.0e-28
Identity = 82/163 (50.31%), Postives = 99/163 (60.74%), Query Frame = 1


Query: 22  SSGDSLELQQKLVRIIVTDADATDSSSDD--EMVSGSTKGIRRQVREIPI--GCYSVFYG 81
           S G SL    K V I  TD DATDSSSD+  E      + ++R V EI +   C +V  G
Sbjct: 31  SGGKSL----KKVSICYTDPDATDSSSDEDEEDFLFPRRRVKRFVNEITVEPSCNNVVTG 90

Query: 82  ------------SSESPVPAISKKRSTRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTR 141
                       S E+  PA S++R   ++ S S   KKFRGVRQRPWG+WAAEIRDP +
Sbjct: 91  VSMKDRKRLSSSSDETQSPASSRQRPN-NKVSVSGQIKKFRGVRQRPWGKWAAEIRDPEQ 150

Query: 142 RKRIWLGTFNTAEEAAAVYDRAALKLHGPNAETNF---PDEGE 166
           R+RIWLGTF TAEEAA VYD AA++L GP+A TNF   P E E
Sbjct: 151 RRRIWLGTFETAEEAAVVYDNAAIRLRGPDALTNFSIPPQEEE 188

[Close]

BLAST of CmoCh02G006870.1 vs. TAIR10
Match: AT3G61630.1 (AT3G61630.1 cytokinin response factor 6)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-25
Identity = 76/161 (47.20%), Postives = 90/161 (55.90%), Query Frame = 1


Query: 8   FFPERRINHRRKPPSSGDSLELQQKLVRIIVTDADATDSSSDDEMVSGST--KGIRRQVR 67
           F   R + +    PS+G       +LVRI VTD  ATDSSSDD+  +  T    ++R V+
Sbjct: 10  FTENRTVTNVAATPSNGSP-----RLVRITVTDPFATDSSSDDDDNNNVTVVPRVKRYVK 69

Query: 68  EIPIGCYSVFYGSSESPVPAISKKRS------TRSQSSKSFHRKKFRGVRQRPWGRWAAE 127
           EI         G S S   A   K             S S   KK+RGVRQRPWG++AAE
Sbjct: 70  EI-----RFCQGESSSSTAARKGKHKEEESVVVEDDVSTSVKPKKYRGVRQRPWGKFAAE 129

Query: 128 IRDPTRRKRIWLGTFNTAEEAAAVYDRAALKLHGPNAETNF 161
           IRDP+ R RIWLGTF TAEEAA  YDRAA+ L GP A TNF
Sbjct: 130 IRDPSSRTRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNF 160

[Close]

BLAST of CmoCh02G006870.1 vs. NCBI nr
Match: gi|659112518|ref|XP_008456258.1| (PREDICTED: ethylene-responsive transcription factor ERF069-like [Cucumis melo])

HSP 1 Score: 313.2 bits (801), Expect = 4.3e-82
Identity = 167/255 (65.49%), Postives = 196/255 (76.86%), Query Frame = 1


Query: 1   MSVGEMGFFPERRINHRRKPPSSGDSLELQQKLVRIIVTDADATDSSSDDEMVSGSTKGI 60
           MSVG+M    E + N RRK  +SGDS + +Q+L+RIIVTDADATDSSS+DE++ GS   I
Sbjct: 18  MSVGDMASLSEHKTNCRRKALTSGDSTKPKQRLLRIIVTDADATDSSSEDELILGSRTTI 77

Query: 61  RRQVREIPIGCYSVFYGSSESPVPAISKKRSTRSQ-SSKSFHRKKFRGVRQRPWGRWAAE 120
           RRQVREI I  +SV   S +SPV  I KKR+ RS+ S+ S  R KFRGVRQRPWGRWAAE
Sbjct: 78  RRQVREITIKRHSVADSSPKSPVSEICKKRNPRSRRSNNSSRRNKFRGVRQRPWGRWAAE 137

Query: 121 IRDPTRRKRIWLGTFNTAEEAAAVYDRAALKLHGPNAETNFPDEGEVSTAAKGGNKQEDG 180
           +RDP  RKRIWLGTF+TAEEAAAVYDRAA++L GPNA TNF  +G V TA  GG+K+EDG
Sbjct: 138 VRDPILRKRIWLGTFDTAEEAAAVYDRAAIELQGPNAATNFSGDGAVKTAVDGGSKKEDG 197

Query: 181 LKSPKTTAVWSPASVLHYDGALPLIDEM-FCREIDEFEFNMEAVARLPAARRQCGGEEDF 240
           ++S KTTA WSP SVLHYD  L  I+EM +C E+DE    M A A LPAARRQC GEED 
Sbjct: 198 VESRKTTAAWSPTSVLHYDSFLTPIEEMVYCGEVDELGLEM-AAASLPAARRQCCGEEDL 257

Query: 241 GEVELDLDYFLVDVL 254
           GE+ELDLDYFLVDV+
Sbjct: 258 GEMELDLDYFLVDVI 271

[Close]

BLAST of CmoCh02G006870.1 vs. NCBI nr
Match: gi|778712954|ref|XP_004140026.2| (PREDICTED: ethylene-responsive transcription factor ERF069-like [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 2.3e-75
Identity = 161/263 (61.22%), Postives = 194/263 (73.76%), Query Frame = 1


Query: 1   MSVGEMGFFPERRINHRRKPPSSGDSLELQQKLVRIIVTDADATDSSSDDEMVSGSTKGI 60
           MSVG+M      + N RRK  +SG+S +  Q+L+RIIVTDADATDSSS+DE++ GS   I
Sbjct: 1   MSVGDMASLSGHKTNCRRKALTSGESTKPNQRLLRIIVTDADATDSSSEDELILGSRTAI 60

Query: 61  RRQVREIPIGCYSVFYGSS-ESPVPAISKKRSTRSQ-SSKSFHRKKFRGVRQRPWGRWAA 120
           RRQVREI I  YSV   SS +SPV  I KKR+ RS+ S+ S  R KFRGVRQRPWGRWAA
Sbjct: 61  RRQVREITIKRYSVPDSSSPKSPVSEICKKRNPRSRRSNNSCRRNKFRGVRQRPWGRWAA 120

Query: 121 EIRDPTRRKRIWLGTFNTAEEAAAVYDRAALKLHGPNAETNFPDEGEVSTAAKGGNKQED 180
           E+RDP  RKRIWLGTF+TAEEAAAVYDRAA++L GPNA TNF  +G V +A +G +K+E+
Sbjct: 121 EVRDPILRKRIWLGTFDTAEEAAAVYDRAAIELQGPNAATNFSGDGAVKSAVEGSSKEEE 180

Query: 181 -------GLKSPKTTAVWSPASVLHYDGALPLIDEM-FCREIDEFEFNMEAVARLPAARR 240
                  G++S KTTA WSP SVLHYD  L  I+EM +C E+DE    + A A LP ARR
Sbjct: 181 EEEEEEGGVESRKTTAAWSPTSVLHYDSFLTPIEEMGYCGEVDELGLEIGA-ASLPTARR 240

Query: 241 QCGGEEDFGEVELDLDYFLVDVL 254
           Q GGEE+ GE+ELDLDYFLVDV+
Sbjct: 241 QYGGEEELGEIELDLDYFLVDVI 262

[Close]

BLAST of CmoCh02G006870.1 vs. NCBI nr
Match: gi|700191564|gb|KGN46768.1| (hypothetical protein Csa_6G133770 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 2.3e-75
Identity = 161/263 (61.22%), Postives = 194/263 (73.76%), Query Frame = 1


Query: 1   MSVGEMGFFPERRINHRRKPPSSGDSLELQQKLVRIIVTDADATDSSSDDEMVSGSTKGI 60
           MSVG+M      + N RRK  +SG+S +  Q+L+RIIVTDADATDSSS+DE++ GS   I
Sbjct: 19  MSVGDMASLSGHKTNCRRKALTSGESTKPNQRLLRIIVTDADATDSSSEDELILGSRTAI 78

Query: 61  RRQVREIPIGCYSVFYGSS-ESPVPAISKKRSTRSQ-SSKSFHRKKFRGVRQRPWGRWAA 120
           RRQVREI I  YSV   SS +SPV  I KKR+ RS+ S+ S  R KFRGVRQRPWGRWAA
Sbjct: 79  RRQVREITIKRYSVPDSSSPKSPVSEICKKRNPRSRRSNNSCRRNKFRGVRQRPWGRWAA 138

Query: 121 EIRDPTRRKRIWLGTFNTAEEAAAVYDRAALKLHGPNAETNFPDEGEVSTAAKGGNKQED 180
           E+RDP  RKRIWLGTF+TAEEAAAVYDRAA++L GPNA TNF  +G V +A +G +K+E+
Sbjct: 139 EVRDPILRKRIWLGTFDTAEEAAAVYDRAAIELQGPNAATNFSGDGAVKSAVEGSSKEEE 198

Query: 181 -------GLKSPKTTAVWSPASVLHYDGALPLIDEM-FCREIDEFEFNMEAVARLPAARR 240
                  G++S KTTA WSP SVLHYD  L  I+EM +C E+DE    + A A LP ARR
Sbjct: 199 EEEEEEGGVESRKTTAAWSPTSVLHYDSFLTPIEEMGYCGEVDELGLEIGA-ASLPTARR 258

Query: 241 QCGGEEDFGEVELDLDYFLVDVL 254
           Q GGEE+ GE+ELDLDYFLVDV+
Sbjct: 259 QYGGEEELGEIELDLDYFLVDVI 280

[Close]

BLAST of CmoCh02G006870.1 vs. NCBI nr
Match: gi|225434321|ref|XP_002265739.1| (PREDICTED: pathogenesis-related genes transcriptional activator PTI6 [Vitis vinifera])

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 110/223 (49.33%), Postives = 135/223 (60.54%), Query Frame = 1


Query: 29  LQQKLVRIIVTDADATDSSSDDEMVSGSTKGIRRQVREIPIGCYSVFYGSSESPVPAISK 88
           ++ ++VRII TD DATDSSSDDE+     + ++R V EI +        S ESP    +K
Sbjct: 52  VRHRVVRIIHTDGDATDSSSDDEVEL--VQRVKRHVTEISL------QPSVESPQKEPTK 111

Query: 89  KRSTRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTRRKRIWLGTFNTAEEAAAVYDRAA 148
           KR  R   S+S  RKKFRGVRQRPWGRWAAEIRDPTRRKR+WLGT++T EEAA VYD+AA
Sbjct: 112 KRVLRLPESESTRRKKFRGVRQRPWGRWAAEIRDPTRRKRLWLGTYDTPEEAARVYDKAA 171

Query: 149 LKLHGPNAETNFPDEGEVSTAAKGGNKQEDGLKSPKTTAVWSPASVLHYDGALPLIDEMF 208
           + L GPNA TNFP   +  + A  G  Q +    P  TA  SP SVL Y+   P     +
Sbjct: 172 VSLKGPNAVTNFPSVVKTESVATAGQSQSETCSLPSVTAS-SPTSVLRYNEEAPFNGFGY 231

Query: 209 CREIDEFEFNMEAVARLPAARRQCGGEED-FGEVELDLDYFLV 251
           C ++D F F+ +    LP        EED FG  E D D FLV
Sbjct: 232 C-DVDAFGFDFDVPLTLPDIFSNKHLEEDEFG--EFDPDDFLV 262

[Close]

BLAST of CmoCh02G006870.1 vs. NCBI nr
Match: gi|830997632|gb|AKL90412.1| (AP2/ERF transcription factor ERF5 [Carica papaya])

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 111/248 (44.76%), Postives = 149/248 (60.08%), Query Frame = 1


Query: 20  PPSSGDSLELQQKLVRIIVTDADATDSSSDDEMVS-GSTKGIRRQVREIPIGCYSV---F 79
           PP+     +++++ V+II+TDADATDSSS+DE    G  + ++RQV+ I     S     
Sbjct: 24  PPADA---KVRRRRVQIILTDADATDSSSEDEEERHGFLRRVKRQVQVITFDSSSTPDPH 83

Query: 80  YGSSESPVPAIS--------KKRSTRSQSSKSFHRKKFRGVRQRPWGRWAAEIRDPTRRK 139
              S +P+PA +        ++R +R   S     +KFRGVRQRPWG+WAAEIRDP +RK
Sbjct: 84  PPRSPTPLPAPTTLPKQKSPRRRPSRVTKSDVSRGQKFRGVRQRPWGKWAAEIRDPAQRK 143

Query: 140 RIWLGTFNTAEEAAAVYDRAALKLHGPNAETNFPDEGEVSTAAKGGNKQEDGLKSPKTTA 199
           RIWLGTFNTAEEAAAVYD AALK  G +A TNFP+       A   + Q+DG  S  +TA
Sbjct: 144 RIWLGTFNTAEEAAAVYDEAALKFKGSDAVTNFPNPSVTELTAV--DSQKDGFDS-SSTA 203

Query: 200 VWSPASVLHYDGALPLIDEMFCREIDEFEFNMEAVARLP--AARRQCGGEEDFGEVELDL 254
             SP SVL Y+   P     +C ++D F F ++A   +P      +   EE+FG  ELD+
Sbjct: 204 TSSPTSVLRYEEITPFDGLNYC-DVDTFGFGIDAALSVPDFMFSGKSFAEEEFG--ELDV 262

The following BLAST results are available for this feature:

BLAST of CmoCh02G006870.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PTI6_SOLLC	1.4e-37	44.93	Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicu...	[more]
CRF4_ARATH	2.7e-28	44.07	Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE...	[more]
CRF2_ARATH	7.9e-28	41.21	Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE...	[more]
CRF1_ARATH	1.0e-27	47.71	Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE...	[more]
CRF3_ARATH	8.8e-27	50.31	Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE...	[more]

BLAST of CmoCh02G006870.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB59_CUCSA	1.6e-75	61.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G133770 PE=4 SV=1	[more]
F6GU77_VITVI	7.5e-41	49.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g08190 PE=4 SV=...	[more]
A0A0K0NKZ3_CARPA	7.0e-39	44.76	AP2/ERF transcription factor ERF5 OS=Carica papaya PE=2 SV=1	[more]
M5WFF2_PRUPE	3.8e-37	45.20	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa025495mg PE=4 SV=1	[more]
M1CZU0_SOLTU	5.0e-37	46.26	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400030472 PE=4 SV=1	[more]

BLAST of CmoCh02G006870.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G27950.1	1.5e-29	44.07	cytokinin response factor 4	[more]
AT4G23750.1	4.5e-29	41.21	cytokinin response factor 2	[more]
AT4G11140.1	5.8e-29	47.71	cytokinin response factor 1	[more]
AT5G53290.1	5.0e-28	50.31	cytokinin response factor 3	[more]
AT3G61630.1	1.8e-25	47.20	cytokinin response factor 6	[more]

BLAST of CmoCh02G006870.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112518\|ref\|XP_008456258.1\|	4.3e-82	65.49	PREDICTED: ethylene-responsive transcription factor ERF069-like [Cucumis melo]	[more]
gi\|778712954\|ref\|XP_004140026.2\|	2.3e-75	61.22	PREDICTED: ethylene-responsive transcription factor ERF069-like [Cucumis sativus...	[more]
gi\|700191564\|gb\|KGN46768.1\|	2.3e-75	61.22	hypothetical protein Csa_6G133770 [Cucumis sativus]	[more]
gi\|225434321\|ref\|XP_002265739.1\|	1.1e-40	49.33	PREDICTED: pathogenesis-related genes transcriptional activator PTI6 [Vitis vini...	[more]
gi\|830997632\|gb\|AKL90412.1\|	1.0e-38	44.76	AP2/ERF transcription factor ERF5 [Carica papaya]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf
IPR017392	AP2/ERF-transcript_factor

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G006870	CmoCh02G006870	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G006870.1	CmoCh02G006870.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G006870.1.CDS.1	CmoCh02G006870.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G006870.1.exon.1	CmoCh02G006870.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 105..116 score: 2.8E-10coord: 127..143 score: 2.8
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 104..162 score: 2.7
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 104..153 score: 4.7
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 104..167 score: 1.1
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 104..161 score: 24
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 104..162 score: 1.96
IPR017392	AP2/ERF transcription factor ERF/PTI6	PIR	PIRSF038123	PTI6	coord: 11..251 score: 6.7
IPR017392	AP2/ERF transcription factor ERF/PTI6	PANTHER	PTHR31194	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	coord: 8..168 score: 1.4
None	No IPR available	PANTHER	PTHR31194:SF6	SUBFAMILY NOT NAMED	coord: 8..168 score: 1.4