CmoCh02G004020.1 (mRNA) Cucurbita moschata (Rifu)

NameCmoCh02G004020.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionEncodes a protein of unknown function that is a marker for oxidative stress response.
LocationCmo_Chr02 : 2076529 .. 2078589 (+)
Sequence length645
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAGAAACTTCTCGTCTTCACCGGCGATCAGTTCAAAGAATTGGGTTTTGGCACATCTGGAGAAGCGGGTAACATTTCCTGTTCTATTTGATGTTTTTTTCTCGATTTCTCTTTGAGCTGCCGATGCTTTTGTTAGTACGGCCGTAGTCGAGGTATCATCTATCTTGTTTATGCTGTGTTGCTGAGCTTTATCTCGTTAGGTCATGGCGAATCTGATTTTGGAAACAGATAGCCGTAATTCGAACTGGATTTCTTCTTTTCAAGTCCATTTTGCTTTCGATTTTTGGTTATCGCGACGAATATTCACTGTTTGACTTCCGATTACATTGTTTTTCTTCTTCGATGTTTTTCACTTTATCGGGAGTTGGTTTGTTTAGGATTATTAGAAGGGAATCTCGGCGTAGATCAAAGTTTTAGGATTATTGTATCACGTATTTGTTTTTAGGAAATAGTTGTAGCAGTGAACAAAGAAAGGAACAAACAACTGACGAGTAATTCAAGAGACAACAGTAGTGCCCCTAATTCGAACCCTTTTGCATCTCACTTCCCCTTTATGATCAAATACAATGAACTTGCATATTCACTCAATACATGAACTTACCCTCCTCTTGTCTTTTTACTGTCTCTCTGAAGAACTATTGAGGGTCTGTCAAATTGATTCTGTCACTGAGATTGGTTTAGAAAGAAGCTTTCATGAGATTAGCCTGTTTCCTTATGTCCCTAGTAGATGCGTTTTAAAAATCTTGGGAGAAAACCAGAAAGGAAAAGCCTAAAGAGGACAATATTTGTTAACCGTGGGCTTGAGCTATTGCAAAAATAATCTTTCGTTGGGAAAATTTCAAGAAACATAATAAGGGATTTATTGTGACGAACTAGCATCGTTTACCTTGACAAATTTCCACATAAACTTTGCAGTGCTAAAGGAGTGAAGGTTTTCTTGTTAGTCACCCTTTAGCCATCAGTCACAACTTCACCAGATATGTAGTTCTACATGCTTTCTTCTCTGCTTAGAACTATGTTCTGCTTAGCTTAACTTGTAATAGACCTAACTCAGCTCTAGCATATATTGTTTTTTTTTTTTAGCTTTCCCTTTAGGTCTTTCCCTCAAGGTTTTAAAATGCGCTCATTAGGGAGAGGTTTCCACACCCTTCTAAGGAATGGGTTGTTCCCTCCACTAATTGATGTGAGATCTCACAATCCACCCCTCTTGGGGGTCCAACATCCTCGCTTGCACGTCGTCCTGTGTTTGGCTCTGATACTATTTGTAACAATTCTAACCCGCCGCTAGCATATATTGTCTTCTTTGAACTTCCCCTTCAAGGACTTCCCCTCAAGGTTTTAAAACGTGTCAGAGGTTTCCACATCTTTACAACCAACTAATGTGGAATCTCACATAACTTTTCTAGTTACTCGTGTATAGCTAATTTATTCCTTTTGTCTTCCTTTCAAACTAGGTTCAAAACCAATGGAACAACAGAAAGAAAAACCATCAGCTGCAGCAAACCCACCCATCACTTCTTGTCGAAAGAAGAAAAACGAAGAAGCTACATTCTTGGAGGACTTGAAGGATCACATCGACGAGTTCATTCACGCATCGATGGACGAACACAAATCGTGCTTTAAGAAAACCATCAACAAGGTATATACTTCCAATTCCTTCACTGTGCATCTAAAAGAAGTAATCATGTTTGTGATACATGTGGTGGATGTGTTCATCTAATACTTCCAAAAACTCATTTGATTGGGTGCACAGATGTTCCGTATGTCTAAAGTTGTGGCAGATAAGAATTCAGAGACAAGTGGAGTTGAGAGCTCTCTGCCTCTTAGAACAACAGTATCAGAATAAATTCTCTTTTTTCCTCTGTTCTAGGATACTCTCTCTCCATCTTCAACCAAATCCTTGTACTTTGGATCTTTTGTTTTGCTTTATTTCCACAGTTTATACCCATTGATACTTATTTTTCTTTTTTGATTCTTAAGTTCTTGTTTATCTCCTCATGCGCACGTTTTTTCTTTGAGTTCAATCGTTAAACTATCGACATTTGAAAGGGTAATTAGGAA

mRNA sequence

CCAGAAACTTCTCGTCTTCACCGGCGATCAGTTCAAAGAATTGGGTTTTGGCACATCTGGAGAAGCGGGTAACATTTCCTGTTCTATTTGATGTTTTTTTCTCGATTTCTCTTTGAGCTGCCGATGCTTTTGTTAGTACGGCCGTAGTCGAGGTTCAAAACCAATGGAACAACAGAAAGAAAAACCATCAGCTGCAGCAAACCCACCCATCACTTCTTGTCGAAAGAAGAAAAACGAAGAAGCTACATTCTTGGAGGACTTGAAGGATCACATCGACGAGTTCATTCACGCATCGATGGACGAACACAAATCGTGCTTTAAGAAAACCATCAACAAGATGTTCCGTATGTCTAAAGTTGTGGCAGATAAGAATTCAGAGACAAGTGGAGTTGAGAGCTCTCTGCCTCTTAGAACAACAGTATCAGAATAAATTCTCTTTTTTCCTCTGTTCTAGGATACTCTCTCTCCATCTTCAACCAAATCCTTGTACTTTGGATCTTTTGTTTTGCTTTATTTCCACAGTTTATACCCATTGATACTTATTTTTCTTTTTTGATTCTTAAGTTCTTGTTTATCTCCTCATGCGCACGTTTTTTCTTTGAGTTCAATCGTTAAACTATCGACATTTGAAAGGGTAATTAGGAA

Coding sequence (CDS)

ATGGAACAACAGAAAGAAAAACCATCAGCTGCAGCAAACCCACCCATCACTTCTTGTCGAAAGAAGAAAAACGAAGAAGCTACATTCTTGGAGGACTTGAAGGATCACATCGACGAGTTCATTCACGCATCGATGGACGAACACAAATCGTGCTTTAAGAAAACCATCAACAAGATGTTCCGTATGTCTAAAGTTGTGGCAGATAAGAATTCAGAGACAAGTGGAGTTGAGAGCTCTCTGCCTCTTAGAACAACAGTATCAGAATAA
BLAST of CmoCh02G004020.1 vs. TrEMBL
Match: A0A0A0LIQ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247070 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-37
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1

Query: 1  MEQQKEKPSAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPS AANPPI SCRKKKNEEATFLEDLKDHIDEFI+ASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 89
          RMSKVVAD+NSET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

BLAST of CmoCh02G004020.1 vs. TrEMBL
Match: W9R2R5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018552 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 9.6e-28
Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 1

Query: 1  MEQQKEKP----SAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI 60
          ME  K +P    SAA  PP++SCRKKK+EEATFLED+KDHIDEFIHASMDEHK+CFKKTI
Sbjct: 1  MESHKTQPEKQSSAATKPPVSSCRKKKSEEATFLEDVKDHIDEFIHASMDEHKTCFKKTI 60

Query: 61 NKMFRMSKVVADKNSETSGVESSLPLRTTV 87
           KMF MSK+VA+++SE  GVESSLPL+TTV
Sbjct: 61 QKMFGMSKIVAERSSEAEGVESSLPLKTTV 90

BLAST of CmoCh02G004020.1 vs. TrEMBL
Match: A0A166IDG2_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003668 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 4.0e-26
Identity = 64/89 (71.91%), Postives = 78/89 (87.64%), Query Frame = 1

Query: 1  MEQQKEKPSAAANPPI-TSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKM 60
          ME +KE+ S A + PI TSCRKKK+EEATFLED+KDHIDEFIHASM+EH +CFKKT+ KM
Sbjct: 1  MEAKKEQSSPAVSTPISTSCRKKKSEEATFLEDVKDHIDEFIHASMEEHATCFKKTVKKM 60

Query: 61 FRMSKVVADKNSETSGVESSLPLRTTVSE 89
          F MSK+VA++NSE+  VESSLPLRTTV++
Sbjct: 61 FGMSKIVAERNSESKEVESSLPLRTTVAD 89

BLAST of CmoCh02G004020.1 vs. TrEMBL
Match: A0A022R7H7_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017130mg PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 9.0e-26
Identity = 64/84 (76.19%), Postives = 75/84 (89.29%), Query Frame = 1

Query: 6  EKPSAAA-NPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMSK 65
          EKPS+AA NP + SCR+KKNE ATFLED+KDHIDEFI ASMDEHK+CF+KTI KMF MSK
Sbjct: 9  EKPSSAAPNPAMASCRRKKNESATFLEDVKDHIDEFISASMDEHKTCFQKTIKKMFSMSK 68

Query: 66 VVADKNSETSGVESSLPLRTTVSE 89
          VVA+++SET  VESSLPL+TTV+E
Sbjct: 69 VVAERSSETKEVESSLPLQTTVAE 92

BLAST of CmoCh02G004020.1 vs. TrEMBL
Match: A0A068TL41_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014267001 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 62/87 (71.26%), Postives = 75/87 (86.21%), Query Frame = 1

Query: 2  EQQKEKPSAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFR 61
          + +K   S A    +TSCRKKKNE+ATFLEDLKDHIDEF+HASMDEHK+CF+KTI KMF 
Sbjct: 7  QNEKLPSSKAPTQAMTSCRKKKNEDATFLEDLKDHIDEFMHASMDEHKTCFQKTIKKMFS 66

Query: 62 MSKVVADKNSETSGVESSLPLRTTVSE 89
          MSKVVA++N+ET+ VESSLPLRT++SE
Sbjct: 67 MSKVVAERNAETANVESSLPLRTSLSE 93

BLAST of CmoCh02G004020.1 vs. TAIR10
Match: AT4G39235.1 (AT4G39235.1 unknown protein)

HSP 1 Score: 108.6 bits (270), Expect = 2.0e-24
Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = 1

Query: 14 PPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMSKVVADKNS-E 73
          P +TSCRKK  ++ATF ED+KDHID+FIHASMDEHKSCF+KTI KMF +SK VA+K + E
Sbjct: 11 PAMTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKSCFQKTIKKMFGLSKAVAEKQAVE 70

Query: 74 TSGVESSLPLRTTVSE 89
            GVES LPL+TTVSE
Sbjct: 71 AKGVESQLPLQTTVSE 86

BLAST of CmoCh02G004020.1 vs. TAIR10
Match: AT3G05570.1 (AT3G05570.1 unknown protein)

HSP 1 Score: 100.9 bits (250), Expect = 4.1e-22
Identity = 53/90 (58.89%), Postives = 66/90 (73.33%), Query Frame = 1

Query: 1  MEQQKEKPSAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          ME QK +      P  +SCRKK  ++A FLED+KDHID+FI+ASMD+HK+CF KTI KMF
Sbjct: 1  METQKTQAENPPKPATSSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKTIKKMF 60

Query: 61 RMSKVVADKNSETS--GVESSLPLRTTVSE 89
           +SK VADK    +  GVES LPL+TTVS+
Sbjct: 61 GLSKAVADKQQSEAKGGVESYLPLQTTVSD 90

BLAST of CmoCh02G004020.1 vs. TAIR10
Match: AT2G21640.1 (AT2G21640.1 Encodes a protein of unknown function that is a marker for oxidative stress response.)

HSP 1 Score: 73.6 bits (179), Expect = 7.0e-14
Identity = 41/79 (51.90%), Postives = 57/79 (72.15%), Query Frame = 1

Query: 15  PITSCRKK-KNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKM---FRMSKVVADKN 74
           P +SCRK+ K++ ATF  +LKDH+DEFIHASMDEHK+CFK T++K+   F  ++ VA+K 
Sbjct: 26  PASSCRKRVKDDNATFFANLKDHMDEFIHASMDEHKTCFKNTMDKIFGSFSKAEAVAEKQ 85

Query: 75  SETSG-VESSLPLRTTVSE 89
            E    VE   PL+T V++
Sbjct: 86  IEAKEVVEIHSPLQTAVTK 104

BLAST of CmoCh02G004020.1 vs. NCBI nr
Match: gi|659122040|ref|XP_008460939.1| (PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo])

HSP 1 Score: 165.6 bits (418), Expect = 3.9e-38
Identity = 84/88 (95.45%), Postives = 86/88 (97.73%), Query Frame = 1

Query: 1  MEQQKEKPSAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPS AANPPI SCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 89
          RMSKVVAD+NSET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

BLAST of CmoCh02G004020.1 vs. NCBI nr
Match: gi|449462228|ref|XP_004148843.1| (PREDICTED: uncharacterized protein LOC101211034 [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 2.5e-37
Identity = 83/88 (94.32%), Postives = 86/88 (97.73%), Query Frame = 1

Query: 1  MEQQKEKPSAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMF 60
          MEQQKEKPS AANPPI SCRKKKNEEATFLEDLKDHIDEFI+ASMDEHKSCFKKTINKMF
Sbjct: 1  MEQQKEKPSTAANPPIPSCRKKKNEEATFLEDLKDHIDEFINASMDEHKSCFKKTINKMF 60

Query: 61 RMSKVVADKNSETSGVESSLPLRTTVSE 89
          RMSKVVAD+NSET+GVESSLPLRTTVSE
Sbjct: 61 RMSKVVADRNSETNGVESSLPLRTTVSE 88

BLAST of CmoCh02G004020.1 vs. NCBI nr
Match: gi|1009133080|ref|XP_015883712.1| (PREDICTED: uncharacterized protein LOC107419483 [Ziziphus jujuba])

HSP 1 Score: 136.0 bits (341), Expect = 3.3e-29
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 1

Query: 4  QKEKPSAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRMS 63
          +KE  SA A PP+TSCRKKK +EATFLED+KDHIDEFIHASMDEHK+CFKKTI KMFRMS
Sbjct: 9  EKEPSSAPAKPPVTSCRKKKKDEATFLEDIKDHIDEFIHASMDEHKTCFKKTIEKMFRMS 68

Query: 64 KVVADKNSETSGVESSLPLRTTV 87
          KVVA++NSET  VESSLPL+TTV
Sbjct: 69 KVVAERNSETKEVESSLPLKTTV 91

BLAST of CmoCh02G004020.1 vs. NCBI nr
Match: gi|703071014|ref|XP_010088925.1| (hypothetical protein L484_018552 [Morus notabilis])

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 1

Query: 1  MEQQKEKP----SAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTI 60
          ME  K +P    SAA  PP++SCRKKK+EEATFLED+KDHIDEFIHASMDEHK+CFKKTI
Sbjct: 1  MESHKTQPEKQSSAATKPPVSSCRKKKSEEATFLEDVKDHIDEFIHASMDEHKTCFKKTI 60

Query: 61 NKMFRMSKVVADKNSETSGVESSLPLRTTV 87
           KMF MSK+VA+++SE  GVESSLPL+TTV
Sbjct: 61 QKMFGMSKIVAERSSEAEGVESSLPLKTTV 90

BLAST of CmoCh02G004020.1 vs. NCBI nr
Match: gi|719996582|ref|XP_010254820.1| (PREDICTED: uncharacterized protein LOC104595677 [Nelumbo nucifera])

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 60/86 (69.77%), Postives = 78/86 (90.70%), Query Frame = 1

Query: 3  QQKEKPSAAANPPITSCRKKKNEEATFLEDLKDHIDEFIHASMDEHKSCFKKTINKMFRM 62
          Q +  P+++A P ITSCR+KK+E+A+FLEDL+DHIDEFIHASMDEHK+CFKKTI KMF M
Sbjct: 7  QPESLPTSSAKPAITSCRRKKSEDASFLEDLRDHIDEFIHASMDEHKTCFKKTIEKMFGM 66

Query: 63 SKVVADKNSETSGVESSLPLRTTVSE 89
          SK+VA++NSE+ G+ESSLPL+TTV++
Sbjct: 67 SKIVAERNSESEGIESSLPLQTTVAK 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LIQ4_CUCSA1.7e-3794.32Uncharacterized protein OS=Cucumis sativus GN=Csa_2G247070 PE=4 SV=1[more]
W9R2R5_9ROSA9.6e-2873.33Uncharacterized protein OS=Morus notabilis GN=L484_018552 PE=4 SV=1[more]
A0A166IDG2_DAUCA4.0e-2671.91Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_003668 PE=4 SV=1[more]
A0A022R7H7_ERYGU9.0e-2676.19Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017130mg PE=4 SV=1[more]
A0A068TL41_COFCA1.2e-2571.26Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014267001 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G39235.12.0e-2471.05 unknown protein[more]
AT3G05570.14.1e-2258.89 unknown protein[more]
AT2G21640.17.0e-1451.90 Encodes a protein of unknown function that is a marker for oxidative... [more]
Match NameE-valueIdentityDescription
gi|659122040|ref|XP_008460939.1|3.9e-3895.45PREDICTED: uncharacterized protein LOC103499674 [Cucumis melo][more]
gi|449462228|ref|XP_004148843.1|2.5e-3794.32PREDICTED: uncharacterized protein LOC101211034 [Cucumis sativus][more]
gi|1009133080|ref|XP_015883712.1|3.3e-2980.72PREDICTED: uncharacterized protein LOC107419483 [Ziziphus jujuba][more]
gi|703071014|ref|XP_010088925.1|1.4e-2773.33hypothetical protein L484_018552 [Morus notabilis][more]
gi|719996582|ref|XP_010254820.1|2.0e-2669.77PREDICTED: uncharacterized protein LOC104595677 [Nelumbo nucifera][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh02G004020CmoCh02G004020gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh02G004020.1CmoCh02G004020.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G004020.1.exon.3CmoCh02G004020.1.exon.3exon
CmoCh02G004020.1.exon.2CmoCh02G004020.1.exon.2exon
CmoCh02G004020.1.exon.1CmoCh02G004020.1.exon.1exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G004020.1.five_prime_UTR.1CmoCh02G004020.1.five_prime_UTR.1five_prime_UTR
CmoCh02G004020.1.five_prime_UTR.2CmoCh02G004020.1.five_prime_UTR.2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G004020.1.CDS.1CmoCh02G004020.1.CDS.1CDS
CmoCh02G004020.1.CDS.2CmoCh02G004020.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G004020.1.three_prime_UTR.1CmoCh02G004020.1.three_prime_UTR.1three_prime_UTR


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33622FAMILY NOT NAMEDcoord: 2..88
score: 2.3
NoneNo IPR availablePANTHERPTHR33622:SF3SUBFAMILY NOT NAMEDcoord: 2..88
score: 2.3