CmoCh02G003930.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh02G003930.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr02 : 2027396 .. 2031085 (+)
Sequence length795
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACGCCTCCACCATCTCCTGGAACTCCTCGTTGCTCATTCCATCTTCCGGATACGAGATTTGTTCTGTTCCTTCACTCAATCGGACGATTTTTTTGCTTTTTTCTGTTTCTGATCGGCTCAGTTTGCTGTGCGGATTCTCTCGCTGTACCACCGCTATTTTCTCCGACTGACTCCTACGATAATGTTTGATTTCTTCAGGATTACCGATTTTCTTTATCGCGATTGAGGCGTTGCCGCTTCCGCTATCGATCTGCTTGATTCGGTACTTGATGGAGGCGTCGCCATGGACGTTTCCGCTTCCGCTTCCGCTATCGATCTGCTTGATTCGATAATCGATGGAGGCGTCGCCTTGGACGTTGCCGCTGCCGCTATCGGTCTGCTTGATTCGGTACTTGATCTCGGCGCGACGAGTTCTTTGATTCTTCTCGCTGTTTTGGATGAACTCCTCGTAAAGATCGGCAACCGAATTCTTCTTGCTCAGATCCGTACCAGAGAACTGTCCCGATTTAGCGAACAGAGTGATGACTATCGCGTTTCCGATCAGAAACACGAAGCGAGGACTAATCAAAGTCATCGACAAGCACCGGAAGTACTCTCCAGAATTCTTGAAGGCGCTCGGCAGATGGATAGATAATTTCGAGATCACGACGAGAATCAAACACAACTCGATGAACCGAAACAGGTTAGCAATTTTCCTGAGCTGTCGATACTTAAGAATCGCGTTCATCTTCTCCGTTCTTATGTCGCAGAAACCGACAGACTCCATTTCCAGAAACAACAAAATCAATCCAGTGAAAACAACAACAACAACAACAACAGAATTTACAAAGACGATCAGGTAAAATCAAATCAATGTCACTGGTAAACAAATTCCTTCTCCGTCAAATTCATCGATCCAACCCCAACAATCATCTCCAGTGGAATCACTTCCAGGAAACTGGACGGTGCTGCAAAGAAATTTGGCGATTGGAAGCATGGAAACAGAGAGAAAATCAACAAGACAAAATTTGAGGAACAAAGAAAAACAGAGTAATCTCCACTTTTTTTTTTTTTTTTTGTTCTTCCTTCTTTTTCTCTTCAACTAGTTTTATTGTTCTTTTTTCTATAAACGCTTTAGTTTCAATGTGTTTTGATAGAAGTAGGATTGGTATTTATAGTCACATAAAATTAATTTTTCCTCTTTAATTAATATATATTCCAATTACTTTATTTTCTGTCTTTAAAAAATTATGCAATTTGAAGCCTTTTGTCTAGAACACCATTTTTAAATTATTTATTAAACATTATTAATGGAATAGAATAAATCCATGGCCATAAAAGGTAGACAGCCCAGTCCTTGGAGATTATATTTTAAAGAATAAATAAATGTTTGTTGATATTAGGATAATAATTTTTTCTTTACTTCTCTTTATTCCAAAAAAAAAATTGATTTCCAAGAATTATTAAAGTAAATTAGAATGTTATCCATTTTTTAATATTTGATTTTAATATTTCAACGTCAATTTTGTAAAAAAATATATATTTTTATTAACTTGGTTTTTTAAAATTTCTATTTAAGTTAAAAAAGAAGTGAAAAATTATTTTAAAATATTAATGGATTTTTAGATTTTTTTTTTTTTTTTTTGTATAATTGCTGACTAGGCAAACAGATATTAGTTGAAAAATGCCAAGTGGACAAAAGGTGAAACAGTTGGAAATATGGAATCCAAGTGGAGATGCCACATTCACTTTCTTACTCACTAAGAAAATGACACGTGGCGCGTTCTTATTCAACCAATGAGTCCTTTTGGGAATTTCTTTTTGCCCTTTATTAGCCTTTTAATTGCCATTCAATTTACACTTATGTCCCGTCCGTCAGTCCCATCTGACACACGGTGACAACTAGTCGCTATCGTTTGTGGATGCCACGTGCTACGTATTTCCACTCTATTGTTAAATTAAAGAATAAAATTAAAAAAAGAAAATATACGCTAAATTAACAAAAAAAAAATTAATTCTTATAAATAATTTTAAAAGTTTAAATAATTCTTTTAAATTTCTAAAAAAAAATAATTATTTTTATTTTTATTTTTATCCCTTTCAAAAATACTCTTTAATTTTCAAAATTATTTCAAATATACATTTAATACTCTTAAATTTTTTTTCAAATTTTTAAAAACACCTTTAAACTAACCAAAAAAACTCTACCTTAGTAATATTAAAAAATTCGAATTCATAGACAACTTTCATCCATGCTGGTAAAGATTTTTCTGAACCTTTTTTATAACCGTAAATGATTTTTTAAATATAGTACGACAAACATATTTTTTAAATTTTTAAAAAAGTTGAAGGGTATTAATAAAATTTTTAAAAGTTGAAACACTCTTAAAAATTCAAAAATATTTTGAAATAAAATACCAGTTCTATCTAAAGCTAACAGTAGGGTATTTTTTTAGACAAATATAAAAGTTAGTCATCCGACTCAAATTCAACGAGCAAACATATTAGTACTTGATCAATAAGTGAATAGGACGATCCAAAAAAAATCAACCAGTAAAAACCCAAAACTTATATACTCTAGAGATAATCTAAGAATAAATATTAAATAACGTGATCGATGAAACAATGATTAAAATCATTTAAAATTCTAAACATTAGAAAATAACAACACCCATATAAAATAAAATAAAATAAAAAAGTATTTGATAGATTTAATTTTTAAAAATTAAAAACTATGAAATAGAATTTAAATCTACCTTTAAATTATAATAAGATTTAAATAGTTGTTTTTTTTTTTATGGAGAGATTAAAAGGAAAAAGACAAATAAGGACAAATATAATAATGGTTAACATTATCCATTTCTTTATCCAATGAAGAATTTTAAAATAATTAAAAATAATAATAATTATAATAATAATAATTTGGGAGAAAAATCCAAATAGCAATAATTGAAGATATTGGAAGGATGATTTAGCATTTCTATATCATTTTCTTTTCTAATCATTTGGTTCCTTAAACAAATCTAACATTTCACCGCTCAAGCTTATCGCTACAAAATATTTTTCGTTTTAGTTCGTTACGTATCGTTTTCAACATCACGGTTTTAAAATATGTTTACTAAGGAGAGGTTTTTACACCTTTATAAGGAACGTTTCGTTCTCCTTTCCAATCAACATAGGATCTTATAATAAAACGGACAATATCTACTAGCGGTGAGTTTTACATGTATTAAACCTTGCACCAACAGATATCTACCAAATGATCATCAACCTTCGTAGGGTCTCTTCCCTCACCTCTTGACTGCTTCGATTTTGATTCGAATCATCCATCTATTTCTTTAAAAACACATTGCCGACAGTATTTCCTACCATCGTAGGAGACACACCGTCTACGTAGAATCAACAATTTTTTTTTGTGGGTTAGGTTGAGTCGAGTTGGATCTCTGTCACCAAACCGGCAAACCCATGTAGAAACGAGAAACCACATAAATCTAGCCCATCCTTGAAGCCAAGCCCATCAAATGCATGACCCAAGTTCGTGCTCGAGAGCCCAACAAGAGTAAGGTTCAATAGACGAATTCAAAAACGCCCCACGCAAAAACATAAAGTCGTGCTAAAAAAATAGGTCATTACATTTAATAAAAATATGTTTGGACTAAAAGTGTTTTTTTTTTTTTTTTCTTTTTGCATTTAAAGATATTAAGTAA

mRNA sequence

ATGAACGCCTCCACCATCTCCTGGAACTCCTCGTTGCTCATTCCATCTTCCGGATACGAGATTTGTTCTGTTCCTTCACTCAATCGGACGATTTTTTTGCTTTTTTCTGTTTCTGATCGGCTCAGTTTGCTGTGCGGATTCTCTCGCTGCGTTGCCGCTTCCGCTATCGATCTGCTTGATTCGGTACTTGATGGAGGCGTCGCCATGGACGTTTCCGCTTCCGCTTCCGCTATCGATCTGCTTGATTCGATAATCGATGGAGGCGTCGCCTTGGACGTTGCCGCTGCCGCTATCGGTCTGCTTGATTCGGTACTTGATCTCGGCGCGACGAGTTCTTTGATTCTTCTCGCTGTTTTGGATGAACTCCTCGTAAAGATCGGCAACCGAATTCTTCTTGCTCAGATCCGTACCAGAGAACTGTCCCGATTTAGCGAACAGAGTGATGACTATCGCGTTTCCGATCAGAAACACGAAGCGAGGACTAATCAAAGTCATCGACAAGCACCGGAAAAACCGACAGACTCCATTTCCAGAAACAACAAAATCAATCCAGTGAAAACAACAACAACAACAACAACAGAATTTACAAAGACGATCAGGAAACTGGACGGTGCTGCAAAGAAATTTGGCGATTGGAAGCATGGAAACAGAGAGAAAATCAACAAGACAAAATTTGAGGAACAAAGAAAAACAGAAAGTAGGATTGTATTTCCTACCATCCCCATCCTTGAAGCCAAGCCCATCAAATGCATGACCCAAGTTCGTGCTCGAGAGCCCAACAAGAATATTAAGTAA

Coding sequence (CDS)

ATGAACGCCTCCACCATCTCCTGGAACTCCTCGTTGCTCATTCCATCTTCCGGATACGAGATTTGTTCTGTTCCTTCACTCAATCGGACGATTTTTTTGCTTTTTTCTGTTTCTGATCGGCTCAGTTTGCTGTGCGGATTCTCTCGCTGCGTTGCCGCTTCCGCTATCGATCTGCTTGATTCGGTACTTGATGGAGGCGTCGCCATGGACGTTTCCGCTTCCGCTTCCGCTATCGATCTGCTTGATTCGATAATCGATGGAGGCGTCGCCTTGGACGTTGCCGCTGCCGCTATCGGTCTGCTTGATTCGGTACTTGATCTCGGCGCGACGAGTTCTTTGATTCTTCTCGCTGTTTTGGATGAACTCCTCGTAAAGATCGGCAACCGAATTCTTCTTGCTCAGATCCGTACCAGAGAACTGTCCCGATTTAGCGAACAGAGTGATGACTATCGCGTTTCCGATCAGAAACACGAAGCGAGGACTAATCAAAGTCATCGACAAGCACCGGAAAAACCGACAGACTCCATTTCCAGAAACAACAAAATCAATCCAGTGAAAACAACAACAACAACAACAACAGAATTTACAAAGACGATCAGGAAACTGGACGGTGCTGCAAAGAAATTTGGCGATTGGAAGCATGGAAACAGAGAGAAAATCAACAAGACAAAATTTGAGGAACAAAGAAAAACAGAAAGTAGGATTGTATTTCCTACCATCCCCATCCTTGAAGCCAAGCCCATCAAATGCATGACCCAAGTTCGTGCTCGAGAGCCCAACAAGAATATTAAGTAA
Homology
The following BLAST results are available for this feature:
BLAST of CmoCh02G003930.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003930.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003930.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh02G003930.1 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh02G003930CmoCh02G003930gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh02G003930.1CmoCh02G003930.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G003930.1.exon.1CmoCh02G003930.1.exon.1exon
CmoCh02G003930.1.exon.2CmoCh02G003930.1.exon.2exon
CmoCh02G003930.1.exon.3CmoCh02G003930.1.exon.3exon
CmoCh02G003930.1.exon.4CmoCh02G003930.1.exon.4exon
CmoCh02G003930.1.exon.5CmoCh02G003930.1.exon.5exon
CmoCh02G003930.1.exon.6CmoCh02G003930.1.exon.6exon
CmoCh02G003930.1.exon.7CmoCh02G003930.1.exon.7exon
CmoCh02G003930.1.exon.8CmoCh02G003930.1.exon.8exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh02G003930.1.CDS.1CmoCh02G003930.1.CDS.1CDS
CmoCh02G003930.1.CDS.2CmoCh02G003930.1.CDS.2CDS
CmoCh02G003930.1.CDS.3CmoCh02G003930.1.CDS.3CDS
CmoCh02G003930.1.CDS.4CmoCh02G003930.1.CDS.4CDS
CmoCh02G003930.1.CDS.5CmoCh02G003930.1.CDS.5CDS
CmoCh02G003930.1.CDS.6CmoCh02G003930.1.CDS.6CDS
CmoCh02G003930.1.CDS.7CmoCh02G003930.1.CDS.7CDS
CmoCh02G003930.1.CDS.8CmoCh02G003930.1.CDS.8CDS