CmoCh02G003510.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G003510.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	SAUR-like auxin-responsive protein family
Location	Cmo_Chr02 : 1756158 .. 1756451 (+)
Sequence length	294

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATCAGACTACCTTCACTTCTTCTCAATGCCAAGCAAGCTGTCAAAATGCATACCGCTTCTTCTAGAAACCGGTGTGGTGTTCCCAAAGGCCATATTGCAGTTTATGTGGGAGATATCGAAAGAAAAAGATTTGTAGTTCCAATAGCATACTTAAACCATCCTTCTTTTTCTGCTTTGCTCAACCGTGCCGAAGAAGAATTTGAATTTAAACATCCAACTGGAGGTCTTACAATTCCTTGCAGAGAAGATGTGTTCATCAATCTCACATCCAGGCTGCAATCTTCATGA

mRNA sequence

ATGGGAATCAGACTACCTTCACTTCTTCTCAATGCCAAGCAAGCTGTCAAAATGCATACCGCTTCTTCTAGAAACCGGTGTGGTGTTCCCAAAGGCCATATTGCAGTTTATGTGGGAGATATCGAAAGAAAAAGATTTGTAGTTCCAATAGCATACTTAAACCATCCTTCTTTTTCTGCTTTGCTCAACCGTGCCGAAGAAGAATTTGAATTTAAACATCCAACTGGAGGTCTTACAATTCCTTGCAGAGAAGATGTGTTCATCAATCTCACATCCAGGCTGCAATCTTCATGA

Coding sequence (CDS)

ATGGGAATCAGACTACCTTCACTTCTTCTCAATGCCAAGCAAGCTGTCAAAATGCATACCGCTTCTTCTAGAAACCGGTGTGGTGTTCCCAAAGGCCATATTGCAGTTTATGTGGGAGATATCGAAAGAAAAAGATTTGTAGTTCCAATAGCATACTTAAACCATCCTTCTTTTTCTGCTTTGCTCAACCGTGCCGAAGAAGAATTTGAATTTAAACATCCAACTGGAGGTCTTACAATTCCTTGCAGAGAAGATGTGTTCATCAATCTCACATCCAGGCTGCAATCTTCATGA

Homology

[Close]

BLAST of CmoCh02G003510.1 vs. Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-23
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 9  LLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSALLNRAEEE 68
          LL AK+ +   TAS+      PKG +AVYVG+ ++KR++VP++YL+ PSF ALL+++EEE
Sbjct: 7  LLGAKKILSRSTASA-----APKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEE 66

Query: 69 FEFKHPTGGLTIPCREDVFINLTSRLQ 96
          F F HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRLQ 88

[Close]

BLAST of CmoCh02G003510.1 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.0e-23
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1


Query: 9  LLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSALLNRAEEE 68
          LL AK+ +   TA+       PKG +AVYVG+ ++KR++VP++YLN PSF ALL+++E+E
Sbjct: 7  LLGAKKILSRSTAAVS---AAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDE 66

Query: 69 FEFKHPTGGLTIPCREDVFINLTSRLQ 96
          F F HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67 FGFDHPMGGLTIPCHEDTFINVTSRLQ 90

[Close]

BLAST of CmoCh02G003510.1 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.0e-23
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 9  LLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSALLNRAEEE 68
          LL AK+ +   T +       PKG +AVYVG+ ++KR++VP++YLN PSF ALL+++EEE
Sbjct: 7  LLGAKKILSRSTGAGS---AAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEE 66

Query: 69 FEFKHPTGGLTIPCREDVFINLTSRLQ 96
          F F HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of CmoCh02G003510.1 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.6e-23
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 9  LLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSALLNRAEEE 68
          LL AK+ +   T ++      PKG +AVYVG+ ++KR++VPI+YLN PSF ALL+++EEE
Sbjct: 7  LLGAKKILSRSTTAAS---AAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEE 66

Query: 69 FEFKHPTGGLTIPCREDVFINLTSRLQ 96
          F F HP GGLTIPC ED FIN+TSR Q
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRFQ 90

[Close]

BLAST of CmoCh02G003510.1 vs. Swiss-Prot
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 8.6e-23
Identity = 50/87 (57.47%), Postives = 66/87 (75.86%), Query Frame = 1


Query: 9  LLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSALLNRAEEE 68
          LL AK+ +   TA+       PKG +AVYVG+ ++KR++VP++YL+ PSF ALL+++EEE
Sbjct: 7  LLGAKKILSRSTAAGS---AAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEE 66

Query: 69 FEFKHPTGGLTIPCREDVFINLTSRLQ 96
          F F HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67 FGFAHPMGGLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of CmoCh02G003510.1 vs. TrEMBL
Match: A0A0A0LM71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.1e-43
Identity = 87/97 (89.69%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSA 60
          MGIRLPSLLLNAKQ  KMHT SSRN+CGVPKGHIAVYVGDIERKRFVVP++YLNHPSFSA
Sbjct: 1  MGIRLPSLLLNAKQVFKMHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSA 60

Query: 61 LLNRAEEEFEFKHPTGGLTIPCREDVFINLTSRLQSS 98
          LL  AEEEF FKHPTGGLTIPCREDVFINLTSRLQ S
Sbjct: 61 LLKSAEEEFGFKHPTGGLTIPCREDVFINLTSRLQIS 97

[Close]

BLAST of CmoCh02G003510.1 vs. TrEMBL
Match: A0A0A0LPH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.6e-34
Identity = 69/97 (71.13%), Postives = 84/97 (86.60%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSA 60
          MGIR+PSLLLNAKQ  +M + S+R    +PKGHIAVYVG+IERKRFVVP++YLNHP+F +
Sbjct: 1  MGIRMPSLLLNAKQIFRMQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLS 60

Query: 61 LLNRAEEEFEFKHPTGGLTIPCREDVFINLTSRLQSS 98
          LLNRAEEEF F HP+GGLTIPC+ED FI+LTS+L +S
Sbjct: 61 LLNRAEEEFGFNHPSGGLTIPCKEDAFIDLTSKLHTS 97

[Close]

BLAST of CmoCh02G003510.1 vs. TrEMBL
Match: A0A0A0LM74_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258830 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 5.8e-34
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSA 60
          MGIRLPS+LLNAKQ +KM   S+RN+  VPKGHIAVYVG+I+RKRFVVPI+YL +PSF  
Sbjct: 1  MGIRLPSILLNAKQILKMQAMSARNQFDVPKGHIAVYVGEIQRKRFVVPISYLKNPSFVD 60

Query: 61 LLNRAEEEFEFKHPTGGLTIPCREDVFINLTSRLQSS 98
          LLNR+EEEF F HP GGLTIPCRED FINLT+RL +S
Sbjct: 61 LLNRSEEEFGFCHPMGGLTIPCREDAFINLTARLHTS 97

[Close]

BLAST of CmoCh02G003510.1 vs. TrEMBL
Match: A0A061DZI1_THECC (SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006725 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.7e-33
Identity = 68/96 (70.83%), Postives = 82/96 (85.42%), Query Frame = 1


Query: 1   MGIRLPSLLLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSA 60
           MG RLPSL+L+++Q +K H+  SR +  VPKGH+AVYVG+ +RKRFVVPI+YLNHPSF+ 
Sbjct: 80  MGFRLPSLILSSRQILKHHSGFSRKQPDVPKGHVAVYVGEAQRKRFVVPISYLNHPSFAE 139

Query: 61  LLNRAEEEFEFKHPTGGLTIPCREDVFINLTSRLQS 97
           LLNRAEEEF F HPTGGLTIPC+ED FINLTS+L S
Sbjct: 140 LLNRAEEEFGFNHPTGGLTIPCKEDAFINLTSQLHS 175

[Close]

BLAST of CmoCh02G003510.1 vs. TrEMBL
Match: A0A0A0LPJ1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258820 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 3.7e-33
Identity = 71/97 (73.20%), Postives = 82/97 (84.54%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSA 60
          MGIRL S+LLNAKQ +KM   S+RN+  VPKGHIAVYVG+I+RKRFVVPI+YL +PSF  
Sbjct: 1  MGIRLQSILLNAKQILKMQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKNPSFVD 60

Query: 61 LLNRAEEEFEFKHPTGGLTIPCREDVFINLTSRLQSS 98
          LLNR+EEEF F HP GGLTIPCRED FINLT+RL +S
Sbjct: 61 LLNRSEEEFGFCHPMGGLTIPCREDAFINLTARLHTS 97

[Close]

BLAST of CmoCh02G003510.1 vs. TAIR10
Match: AT4G34810.1 (AT4G34810.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 113.6 bits (283), Expect = 6.8e-26
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 1


Query: 1   MGIRLPSLLLNAKQAVKMHTASSRNRCG------VPKGHIAVYVGD---IERKRFVVPIA 60
           MG+   ++    KQ +K+++ ++RNR        VPKGH+AVYVG+   +E+KRFVVPI+
Sbjct: 1   MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 61  YLNHPSFSALLNRAEEEFEFKHPTGGLTIPCREDVFINL-TSRLQ 96
           +LNHPSF   L+RAEEEF F HP GGLTIPCRE+VF++L  SRLQ
Sbjct: 61  FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRLQ 105

[Close]

BLAST of CmoCh02G003510.1 vs. TAIR10
Match: AT2G21210.1 (AT2G21210.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 113.6 bits (283), Expect = 6.8e-26
Identity = 54/98 (55.10%), Postives = 73/98 (74.49%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDI-ERKRFVVPIAYLNHPSFS 60
          M IR+  +L ++KQ +K  + SS N   +PKGH+AVYVG++ +++RFVVP+ YL+HP F 
Sbjct: 1  MAIRISRVLQSSKQLLKSLSHSSNN-VAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQ 60

Query: 61 ALLNRAEEEFEFKHPTGGLTIPCREDVFINLTSRLQSS 98
           LL +AEEEF F HP GGLTIPC E +FI+L SRL +S
Sbjct: 61 KLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRLSTS 97

[Close]

BLAST of CmoCh02G003510.1 vs. TAIR10
Match: AT4G38840.1 (AT4G38840.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 110.5 bits (275), Expect = 5.7e-25
Identity = 52/97 (53.61%), Postives = 72/97 (74.23%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQAVK----MHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHP 60
          M IR+P +L ++KQ ++    + ++SS +   VPKG++AVYVG+   KRFVVP++YL+ P
Sbjct: 1  MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 61 SFSALLNRAEEEFEFKHPTGGLTIPCREDVFINLTSR 94
          SF  LL +AEEEF F HP GGLTIPC E++FI+L SR
Sbjct: 61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASR 97

[Close]

BLAST of CmoCh02G003510.1 vs. TAIR10
Match: AT5G18030.1 (AT5G18030.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-24
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 1


Query: 9  LLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSALLNRAEEE 68
          LL AK+ +   TAS+      PKG +AVYVG+ ++KR++VP++YL+ PSF ALL+++EEE
Sbjct: 7  LLGAKKILSRSTASA-----APKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEE 66

Query: 69 FEFKHPTGGLTIPCREDVFINLTSRLQ 96
          F F HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRLQ 88

[Close]

BLAST of CmoCh02G003510.1 vs. TAIR10
Match: AT5G18080.1 (AT5G18080.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 108.2 bits (269), Expect = 2.8e-24
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 1


Query: 9  LLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSALLNRAEEE 68
          LL AK+ +   T +       PKG +AVYVG+ ++KR++VP++YLN PSF ALL+++EEE
Sbjct: 7  LLGAKKILSRSTGAGS---AAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEE 66

Query: 69 FEFKHPTGGLTIPCREDVFINLTSRLQ 96
          F F HP GGLTIPC ED FIN+TSRLQ
Sbjct: 67 FGFDHPMGGLTIPCPEDTFINVTSRLQ 90

[Close]

BLAST of CmoCh02G003510.1 vs. NCBI nr
Match: gi|449458562|ref|XP_004147016.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 4.4e-43
Identity = 87/97 (89.69%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSA 60
          MGIRLPSLLLNAKQ  KMHT SSRN+CGVPKGHIAVYVGDIERKRFVVP++YLNHPSFSA
Sbjct: 1  MGIRLPSLLLNAKQVFKMHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSA 60

Query: 61 LLNRAEEEFEFKHPTGGLTIPCREDVFINLTSRLQSS 98
          LL  AEEEF FKHPTGGLTIPCREDVFINLTSRLQ S
Sbjct: 61 LLKSAEEEFGFKHPTGGLTIPCREDVFINLTSRLQIS 97

[Close]

BLAST of CmoCh02G003510.1 vs. NCBI nr
Match: gi|659115600|ref|XP_008457637.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 1.3e-42
Identity = 86/97 (88.66%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSA 60
          MGIRLPSLL NAKQ  KMHT SSRN+CGVPKGHIAVYVGDIERKRFVVP++YLNHPSFSA
Sbjct: 1  MGIRLPSLLFNAKQVFKMHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSA 60

Query: 61 LLNRAEEEFEFKHPTGGLTIPCREDVFINLTSRLQSS 98
          LL  AEEEF FKHPTGGLTIPCREDVFINLTSRLQ S
Sbjct: 61 LLKSAEEEFGFKHPTGGLTIPCREDVFINLTSRLQIS 97

[Close]

BLAST of CmoCh02G003510.1 vs. NCBI nr
Match: gi|778669614|ref|XP_011649278.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 154.8 bits (390), Expect = 7.5e-35
Identity = 73/97 (75.26%), Postives = 83/97 (85.57%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSA 60
          MGIRLPS+LLNAKQ +KM   S+RN+  VPKGHIAVYVG+I+RKRFVVPI+YL HPSF  
Sbjct: 1  MGIRLPSILLNAKQVLKMQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVD 60

Query: 61 LLNRAEEEFEFKHPTGGLTIPCREDVFINLTSRLQSS 98
          LLNR+EEEF F HP GGLTIPCRED FINLT+RL +S
Sbjct: 61 LLNRSEEEFGFCHPMGGLTIPCREDAFINLTARLHTS 97

[Close]

BLAST of CmoCh02G003510.1 vs. NCBI nr
Match: gi|778669580|ref|XP_011649270.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 152.5 bits (384), Expect = 3.7e-34
Identity = 69/97 (71.13%), Postives = 84/97 (86.60%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSA 60
          MGIR+PSLLLNAKQ  +M + S+R    +PKGHIAVYVG+IERKRFVVP++YLNHP+F +
Sbjct: 1  MGIRMPSLLLNAKQIFRMQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLS 60

Query: 61 LLNRAEEEFEFKHPTGGLTIPCREDVFINLTSRLQSS 98
          LLNRAEEEF F HP+GGLTIPC+ED FI+LTS+L +S
Sbjct: 61 LLNRAEEEFGFNHPSGGLTIPCKEDAFIDLTSKLHTS 97

[Close]

BLAST of CmoCh02G003510.1 vs. NCBI nr
Match: gi|778669611|ref|XP_011649277.1| (PREDICTED: auxin-induced protein X15-like [Cucumis sativus])

HSP 1 Score: 151.4 bits (381), Expect = 8.3e-34
Identity = 72/97 (74.23%), Postives = 83/97 (85.57%), Query Frame = 1


Query: 1  MGIRLPSLLLNAKQAVKMHTASSRNRCGVPKGHIAVYVGDIERKRFVVPIAYLNHPSFSA 60
          MGIRLPS+LLNAKQ +KM   S+RN+  VPKGHIAVYVG+I+RKRFVVPI+YL +PSF  
Sbjct: 1  MGIRLPSILLNAKQILKMQAMSARNQFDVPKGHIAVYVGEIQRKRFVVPISYLKNPSFVD 60

Query: 61 LLNRAEEEFEFKHPTGGLTIPCREDVFINLTSRLQSS 98
          LLNR+EEEF F HP GGLTIPCRED FINLT+RL +S
Sbjct: 61 LLNRSEEEFGFCHPMGGLTIPCREDAFINLTARLHTS 97

The following BLAST results are available for this feature:

BLAST of CmoCh02G003510.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAU21_ARATH	3.9e-23	58.62	Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1	[more]
SAU22_ARATH	5.0e-23	57.47	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1	[more]
SAU24_ARATH	5.0e-23	57.47	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1	[more]
SAU20_ARATH	8.6e-23	57.47	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1	[more]
SAU19_ARATH	8.6e-23	57.47	Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1	[more]

BLAST of CmoCh02G003510.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM71_CUCSA	3.1e-43	89.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1	[more]
A0A0A0LPH3_CUCSA	2.6e-34	71.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1	[more]
A0A0A0LM74_CUCSA	5.8e-34	74.23	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258830 PE=4 SV=1	[more]
A0A061DZI1_THECC	1.7e-33	70.83	SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006725 PE=4 ...	[more]
A0A0A0LPJ1_CUCSA	3.7e-33	73.20	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258820 PE=4 SV=1	[more]

BLAST of CmoCh02G003510.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G34810.1	6.8e-26	55.24	SAUR-like auxin-responsive protein family	[more]
AT2G21210.1	6.8e-26	55.10	SAUR-like auxin-responsive protein family	[more]
AT4G38840.1	5.7e-25	53.61	SAUR-like auxin-responsive protein family	[more]
AT5G18030.1	2.2e-24	58.62	SAUR-like auxin-responsive protein family	[more]
AT5G18080.1	2.8e-24	57.47	SAUR-like auxin-responsive protein family	[more]

BLAST of CmoCh02G003510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458562\|ref\|XP_004147016.1\|	4.4e-43	89.69	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659115600\|ref\|XP_008457637.1\|	1.3e-42	88.66	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|778669614\|ref\|XP_011649278.1\|	7.5e-35	75.26	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|778669580\|ref\|XP_011649270.1\|	3.7e-34	71.13	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|778669611\|ref\|XP_011649277.1\|	8.3e-34	74.23	PREDICTED: auxin-induced protein X15-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G003510	CmoCh02G003510	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G003510.1	CmoCh02G003510.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G003510.1.exon.1	CmoCh02G003510.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G003510.1.CDS.1	CmoCh02G003510.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 17..93 score: 2.2
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 2..97 score: 9.6
None	No IPR available	PANTHER	PTHR31929:SF3	SUBFAMILY NOT NAMED	coord: 2..97 score: 9.6