CmoCh02G002360.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh02G002360.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr02 : 1114783 .. 1115477 (+)
Sequence length	489

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCTTTCTCAACCCTGTTTGTTTCCTGAGAAAATATTTCACCTTTCTTTCCCGAGAAAATTACTAGGATCAAATGGCTGATCTTTCTTTGAGAAACCCATTAATTTGGTTAATTTCTTTCACTTTTTTCCTCCTCTCTTGGGGTTTTTTGGGATTCTCATCTCTTTTACTTACCTCAATACCTCTGATTATATCTATGCTTTATTTTTCAATCGCCAAAAGAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAAATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGAGGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTAAGGCAAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATCGAGATCTCTCTCCCGACCGGTCATTATGTCAGCCACGAGTTCGAGGACGAGGAAGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAAGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCGACGAGGAGAATTTGATAGAGATCGACATATCCATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGGAGGAAGGAAATAA

mRNA sequence

ATGGAGTCTTTCTCAACCCTAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAAATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGAGGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTAAGGCAAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATCGAGATCTCTCTCCCGACCGGTCATTATGTCAGCCACGAGTTCGAGGACGAGGAAGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAAGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCGACGAGGAGAATTTGATAGAGATCGACATATCCATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGGAGGAAGGAAATAA

Coding sequence (CDS)

ATGGAGTCTTTCTCAACCCTAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAAATCCTCGCCGACGGCCGGCGGTTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGAGGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTAAGGCAAAAACCCTAGACCAGTCCGATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATCGAGATCTCTCTCCCGACCGGTCATTATGTCAGCCACGAGTTCGAGGACGAGGAAGAAGAAGAGGACGACATGTCGTCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAAGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCGACGAGGAGAATTTGATAGAGATCGACATATCCATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGGAGGAAGGAAATAA

Homology

[Close]

BLAST of CmoCh02G002360.1 vs. TrEMBL
Match: A0A0A0KCP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G112470 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 5.6e-42
Identity = 107/169 (63.31%), Postives = 130/169 (76.92%), Query Frame = 1


Query: 3   SFSTLNSFPIEKFIEEEK-----KEVTFVSDR-----KSSPTAGGLLPESECADDNFTTT 62
           S S  NS PI KF++EE+     K++TF SD       S+PT   LL ESECADDNFTTT
Sbjct: 7   SISKRNSLPIRKFVQEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTT 66

Query: 63  EDSEVGWGAFD-RF-KAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMS 122
           E+SEV W  FD RF K +   +SD+GSISDEESLIEI+LPTGHYVS +F+D +E+EDD+S
Sbjct: 67  EESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDDIS 126

Query: 123 SCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
             Y++L +F  Q+KNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 127 FRYQKLTDF--QRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 173

[Close]

BLAST of CmoCh02G002360.1 vs. TrEMBL
Match: B9SW40_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0346450 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-19
Identity = 68/124 (54.84%), Postives = 88/124 (70.97%), Query Frame = 1


Query: 41  ESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFE 100
           ESEC   + TT+EDSEV +  F     ++ D SD GSISDE+SLIEI+LP+GHY+ H  +
Sbjct: 109 ESECLGRSSTTSEDSEVNYWQFQDHMLQSPDFSD-GSISDEDSLIEIALPSGHYIGH--K 168

Query: 101 DEEEEEDDMSSCYRELPEFEK----QKKNLMELLAEIND--IDEENLIEIDISMGSIKYS 159
           + EE++D  SS  ++L +F      ++  LMELLAE+ND  I+EENLIEIDISMGSIK  
Sbjct: 169 ETEEDQDLKSSSQKKLQDFVPGSFFKQHGLMELLAELNDMNIEEENLIEIDISMGSIKCP 228

[Close]

BLAST of CmoCh02G002360.1 vs. TrEMBL
Match: A0A061DM67_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_002409 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-19
Identity = 71/126 (56.35%), Postives = 87/126 (69.05%), Query Frame = 1


Query: 38  LLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSH 97
           +L E+EC D   +TTEDSEV W   D    ++ D SD GSISDE+SLIEISLP GHYV H
Sbjct: 129 VLSENECVDQ-LSTTEDSEVDWPFQDNID-QSPDYSD-GSISDEDSLIEISLPGGHYVGH 188

Query: 98  EFEDEEEEEDDMSSCYRELPEFEK----QKKNLMELLAEINDIDEE-NLIEIDISMGSIK 157
                 +EE    S  ++LP+F      Q+++LMELLAE N+++EE NLIEIDISMGSIK
Sbjct: 189 ------KEEKPKFSMQQKLPDFMPESFFQQRSLMELLAEFNEMNEEDNLIEIDISMGSIK 245

Query: 158 YSRFEI 159
            SRFEI
Sbjct: 249 CSRFEI 245

[Close]

BLAST of CmoCh02G002360.1 vs. TrEMBL
Match: A0A067K124_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18500 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 3.3e-18
Identity = 78/171 (45.61%), Postives = 102/171 (59.65%), Query Frame = 1


Query: 11  PIEKFIEEEKKEVT-------FVSDR-----KSSPTAGGLLPESECADDNF----TTTED 70
           P+EK IE+E   V         V D+     +S         E E  +DN+    +T+ED
Sbjct: 21  PVEKSIEDETISVPDQGSSPKIVQDKDIVSKESKKEEDQEEEEEEEEEDNYLARSSTSED 80

Query: 71  SEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYR 130
           SEV W   D+   ++ D SD GSISDEESLIEI+LP+GHY+ H    E+EE +   +  +
Sbjct: 81  SEVEWSFQDKI-FRSSDCSD-GSISDEESLIEIALPSGHYIGHN-NKEDEESNKFINMRK 140

Query: 131 ELPEFE------KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           +LP+F       KQ   LMELLAE+ND+ +EENLIEIDIS+GSIK  RFEI
Sbjct: 141 KLPDFASAGSLLKQHGGLMELLAELNDMNEEENLIEIDISIGSIKCPRFEI 188

[Close]

BLAST of CmoCh02G002360.1 vs. TrEMBL
Match: W9RVQ6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014260 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.7e-17
Identity = 69/155 (44.52%), Postives = 92/155 (59.35%), Query Frame = 1


Query: 17  EEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRF----KAKTLDQ 76
           E E +E   +S   S  +   L   S+   D+ + TEDSE  W   D      K      
Sbjct: 46  ENESQEHQDMSSHVSVSSQNSLSELSDQCLDHSSITEDSEAEWPFRDNISAGRKTAVFSD 105

Query: 77  SDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYREL--------PEFEKQKK 136
            D+GSISDEESLIEI+LP+GHYV H+ +    +E  + +  +++        PE   +++
Sbjct: 106 DDDGSISDEESLIEIALPSGHYVGHDHDGYLNKEKLVFNVNQKMPADLNNLFPECIFKQR 165

Query: 137 NLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           +LMELLAEIND+ +EENLIEIDISMGSIK SRFEI
Sbjct: 166 SLMELLAEINDMNEEENLIEIDISMGSIKCSRFEI 200

[Close]

BLAST of CmoCh02G002360.1 vs. TAIR10
Match: AT2G04480.1 (AT2G04480.1 unknown protein)

HSP 1 Score: 77.4 bits (189), Expect = 9.0e-15
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1


Query: 68  KTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLM 127
           KT ++ D+G+I D+ESLIE+SLP+GHY+ H +   +         + ++ +F      L 
Sbjct: 163 KTNEEDDDGAIPDDESLIELSLPSGHYLGHHYNSNKNH----LYIHNKVQDF-----RLF 222

Query: 128 ELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           +LL EIND  +E+NLIEIDIS+GSIKYSRFEI
Sbjct: 223 DLLNEINDFTEEDNLIEIDISIGSIKYSRFEI 245

[Close]

BLAST of CmoCh02G002360.1 vs. TAIR10
Match: AT5G35870.1 (AT5G35870.1 unknown protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-12
Identity = 42/88 (47.73%), Postives = 58/88 (65.91%), Query Frame = 1


Query: 71  DQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLMELL 130
           +  D+G+I DEESLIE+SLP+GHY+ H +     ++ D    Y  +P+F      L++L 
Sbjct: 116 NDEDDGTIPDEESLIELSLPSGHYIGHHYSTMIGKQ-DQKIMYNNIPDF-----RLIQLS 175

Query: 131 AEINDIDEENLIEIDISMGSIKYSRFEI 159
           AE  D   +NLIEIDIS+GSIK SRF+I
Sbjct: 176 AEYED---DNLIEIDISIGSIKCSRFQI 194

[Close]

BLAST of CmoCh02G002360.1 vs. NCBI nr
Match: gi|778712376|ref|XP_011656887.1| (PREDICTED: uncharacterized protein LOC105435780 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 8.1e-42
Identity = 107/169 (63.31%), Postives = 130/169 (76.92%), Query Frame = 1


Query: 3   SFSTLNSFPIEKFIEEEK-----KEVTFVSDR-----KSSPTAGGLLPESECADDNFTTT 62
           S S  NS PI KF++EE+     K++TF SD       S+PT   LL ESECADDNFTTT
Sbjct: 60  SISKRNSLPIRKFVQEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTT 119

Query: 63  EDSEVGWGAFD-RF-KAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMS 122
           E+SEV W  FD RF K +   +SD+GSISDEESLIEI+LPTGHYVS +F+D +E+EDD+S
Sbjct: 120 EESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDDIS 179

Query: 123 SCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
             Y++L +F  Q+KNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 180 FRYQKLTDF--QRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 226

[Close]

BLAST of CmoCh02G002360.1 vs. NCBI nr
Match: gi|700191405|gb|KGN46609.1| (hypothetical protein Csa_6G112470 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 8.1e-42
Identity = 107/169 (63.31%), Postives = 130/169 (76.92%), Query Frame = 1


Query: 3   SFSTLNSFPIEKFIEEEK-----KEVTFVSDR-----KSSPTAGGLLPESECADDNFTTT 62
           S S  NS PI KF++EE+     K++TF SD       S+PT   LL ESECADDNFTTT
Sbjct: 7   SISKRNSLPIRKFVQEEEEEEDQKQLTFFSDHLKSSSASAPTIEDLLSESECADDNFTTT 66

Query: 63  EDSEVGWGAFD-RF-KAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMS 122
           E+SEV W  FD RF K +   +SD+GSISDEESLIEI+LPTGHYVS +F+D +E+EDD+S
Sbjct: 67  EESEVEWPYFDHRFNKTRNPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDDIS 126

Query: 123 SCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
             Y++L +F  Q+KNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 127 FRYQKLTDF--QRKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 173

[Close]

BLAST of CmoCh02G002360.1 vs. NCBI nr
Match: gi|659128354|ref|XP_008464163.1| (PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 1.8e-41
Identity = 107/173 (61.85%), Postives = 131/173 (75.72%), Query Frame = 1


Query: 3   SFSTLNSFPIEKFI-------EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFT 62
           S S  +S PI+KF+       EE++KE+TF SD       S+PT   LL ESECADDNFT
Sbjct: 60  SISKRSSLPIQKFVQEQEEEEEEDQKELTFFSDHLKSSSASAPTTRDLLSESECADDNFT 119

Query: 63  TTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFE--DEEEEE 122
           TTE+SEV W  FD   +KA++  +SD+GSISDEESLIEI+LPTGHYVS +F+  DE+E+E
Sbjct: 120 TTEESEVEWPYFDHRFYKARSPHRSDDGSISDEESLIEIALPTGHYVSRKFDDVDEDEDE 179

Query: 123 DDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI 159
           DD    Y++L +F  QKKNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Sbjct: 180 DDTPFRYQKLSDF--QKKNLVEVLAEINDINEEENLIEIDISMGSIKYSRFEI 230

[Close]

BLAST of CmoCh02G002360.1 vs. NCBI nr
Match: gi|1000944822|ref|XP_015581495.1| (PREDICTED: uncharacterized protein LOC8264016 [Ricinus communis])

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-20
Identity = 74/150 (49.33%), Postives = 103/150 (68.67%), Query Frame = 1


Query: 17  EEEKKEVTFVSDR--KSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSD 76
           +EE+++ + + +   +SSP    +L ESEC   + TT+EDSEV +  F     ++ D SD
Sbjct: 99  DEEEEDRSQIGEYLIRSSPI---MLSESECLGRSSTTSEDSEVNYWQFQDHMLQSPDFSD 158

Query: 77  EGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEK----QKKNLMELL 136
            GSISDE+SLIEI+LP+GHY+ H  ++ EE++D  SS  ++L +F      ++  LMELL
Sbjct: 159 -GSISDEDSLIEIALPSGHYIGH--KETEEDQDLKSSSQKKLQDFVPGSFFKQHGLMELL 218

Query: 137 AEIND--IDEENLIEIDISMGSIKYSRFEI 159
           AE+ND  I+EENLIEIDISMGSIK  RFEI
Sbjct: 219 AELNDMNIEEENLIEIDISMGSIKCPRFEI 242

[Close]

BLAST of CmoCh02G002360.1 vs. NCBI nr
Match: gi|223530256|gb|EEF32156.1| (hypothetical protein RCOM_0346450 [Ricinus communis])

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 68/124 (54.84%), Postives = 88/124 (70.97%), Query Frame = 1


Query: 41  ESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFE 100
           ESEC   + TT+EDSEV +  F     ++ D SD GSISDE+SLIEI+LP+GHY+ H  +
Sbjct: 109 ESECLGRSSTTSEDSEVNYWQFQDHMLQSPDFSD-GSISDEDSLIEIALPSGHYIGH--K 168

Query: 101 DEEEEEDDMSSCYRELPEFEK----QKKNLMELLAEIND--IDEENLIEIDISMGSIKYS 159
           + EE++D  SS  ++L +F      ++  LMELLAE+ND  I+EENLIEIDISMGSIK  
Sbjct: 169 ETEEDQDLKSSSQKKLQDFVPGSFFKQHGLMELLAELNDMNIEEENLIEIDISMGSIKCP 228

The following BLAST results are available for this feature:

BLAST of CmoCh02G002360.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh02G002360.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCP7_CUCSA	5.6e-42	63.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G112470 PE=4 SV=1	[more]
B9SW40_RICCO	1.0e-19	54.84	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0346450 PE=4 SV=1	[more]
A0A061DM67_THECC	1.8e-19	56.35	Uncharacterized protein OS=Theobroma cacao GN=TCM_002409 PE=4 SV=1	[more]
A0A067K124_JATCU	3.3e-18	45.61	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18500 PE=4 SV=1	[more]
W9RVQ6_9ROSA	1.7e-17	44.52	Uncharacterized protein OS=Morus notabilis GN=L484_014260 PE=4 SV=1	[more]

BLAST of CmoCh02G002360.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04480.1	9.0e-15	48.91	unknown protein	[more]
AT5G35870.1	1.4e-12	47.73	unknown protein	[more]

BLAST of CmoCh02G002360.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778712376\|ref\|XP_011656887.1\|	8.1e-42	63.31	PREDICTED: uncharacterized protein LOC105435780 [Cucumis sativus]	[more]
gi\|700191405\|gb\|KGN46609.1\|	8.1e-42	63.31	hypothetical protein Csa_6G112470 [Cucumis sativus]	[more]
gi\|659128354\|ref\|XP_008464163.1\|	1.8e-41	61.85	PREDICTED: uncharacterized protein LOC103502111 [Cucumis melo]	[more]
gi\|1000944822\|ref\|XP_015581495.1\|	2.3e-20	49.33	PREDICTED: uncharacterized protein LOC8264016 [Ricinus communis]	[more]
gi\|223530256\|gb\|EEF32156.1\|	1.5e-19	54.84	hypothetical protein RCOM_0346450 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh02G002360	CmoCh02G002360	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh02G002360.1	CmoCh02G002360.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G002360.1.exon.1	CmoCh02G002360.1.exon.1	exon
CmoCh02G002360.1.exon.2	CmoCh02G002360.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh02G002360.1.CDS.1	CmoCh02G002360.1.CDS.1	CDS
CmoCh02G002360.1.CDS.2	CmoCh02G002360.1.CDS.2	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 119..139 scor
None	No IPR available	PANTHER	PTHR35708	FAMILY NOT NAMED	coord: 41..160 score: 2.6