CmoCh01G009040.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAACAAAACACACACAGAAAATCACAGCAGCAGAAGAAAAAAAAAGAAAACTTCCTTGTTCTTCCTCTTATCCCACAGAGCTCCATTGATGAGCTGATCGGCTTCCACACAATTCTTGTCTCTTCTTTATGATGCGCGCCCATCTCACCTTATGGCCGTCATCTTCAAACCCATCGCCTTATCTTTCTTCTCTCCACTTCTCTCCTCCTCTCTCCTCCTCCTCTTTCCTCTTCAGCTTCACACCCAACAAACGCTTCCACTTCCTCAAGACCTGTTCCTCTCTCAAGCAATCCAAGAAGCCTTCTCTTCAGAAGACTCCCACTACCGCCCCTCAGAGTTTCAAGTGGCTCTTTAGCCCCAAGTCCGACGACGATGACGCCACCGCCGCCGCCGCCGATAAAGGGAATAAGGACGCCGAGGACGATACTGCTCTTAAGGGTACCCTTTTGGCCGGTGTGTTGCTTCTTGGGATTATTGGTGGATTTGCATTTGCTGGATATGTTTACAAGGATCCGATTAATGCGTTCTTGAATCAGTTCTCCACGTTTATTGACGGTAATTTTGTGATTATTCATGGATTTTTGTTGTTTTCTGTTTTTAGTTTTGAATTTGGGAATGGATTGATTATCATTGTGCTTTGTTCTTCGTTGCTGTTTGAATTGGTCGTAAGTATGACTTCTTTTATAGGCTTCCCTTCAGGTTTTCTTTTAAAACTATGCTGAATTTCTGGAGTTATTTGAACTTGATCATACTGTTAAACACCAATAGTGTTTGGAGTTATATGATTGTATCCTACTTTTCTCTTGTACTTCCATGTTTATTATGTTTTGGTTTTAGCTTTCAGACCTTCTGCTTTAGTCTTTGAACTTTGCATTATAATCATCTTAGTCTTTTTCATTAACTTTCTGAACTATTTAGTACGAACTTGTTTAACCAGTACATGACTATATAGAGACCGAATGTTTGTGTTATCACAAGGGAACTGGAAGTAGCTGACTTCGCTAATTTGGTTGGATTTGTTTAAATATTTATTTAGATTATTTAGATTATTTAGTGATTGCCCTTTCTCCTTTATGAAAGGATATATAATTCTCTGCAAAACAATAAAAACACAGCAGTTTGATTTAGATTTCCAACTTGGTATTAGAGATTTTTTAGAAGATCTGATTAGAATCAAAACCCTAACTTAATCGGTGAAGCCTTCATCACTACCGATGATCCATCGTGATCACATTTCATTCGAAGCCTTCATAGCTTCCGTCACCGTGACCAATTTCCATTTAGATTGTGAAGAAAAGGGAACATATTACTACCCTACTGATTTGTTTTTCCCAATAGAAAAAAATTTCAAGTCGTTCTTCCAATCATCATCACTAAACATCAAATTTTGAGATTCATATTTGAAGTATTCAATAATGGAGGGAACCAAAGGCGTCCAAAGGCGTCCAAAGGCGTCGGAGGAAGAAAAGGAGGCGACAAAACTAAGATCTCTCAATTTGTCAAGGCTGGACTCGAATTCTTGAATGGAAGAATCAAACGGTACCTTAAAAAAAGTTGCTACGAAAAGTCTACTGTCGTAGATTATTAGTTCACCCCTGCTACTGCTAATTTACCAACTAAACCATTCACTCCAAAGAAGTGGCCACGAGAGAGGCGAGCAACACCCATGGATGTGCTCCAAGAGAAGTGAACACGAGAGCTTCATAGCTACCAATCTTCCACCTGTTCTTCCATCTTAACCAAATTTATTTAGAGCCTTAATAGCTACTGTTGACAAATTTATTCGGAGCCTTCATGGCTACCGTTGACAAATTATTTGGTCGGAGCCTTCATTGACAAATTTTGTTCGGTGCCTATTGACAAATTTATTTGGAGCCTTCGTAACTGCGGTTGACAAATTTATTCGGAGTCCCTGCCTACTAAGATTATCTAGTGATTTAGATTTAGTTAGCATTTTTCCATATATATATAATTCTTTGAAAATTAATTAGAAAACAACGATCCAATTTAGACTTGCAACAAATTTGATGTCAGAGTTCTGAACTAGGTTTAAGTTGTTTATTTGAACGACTAATGACACGTGAATGAGAATCACTAAAATAGTTTCTGATGCAAAGTGTAGAAGTTTAAAGTTTAGTGATCAAACTAAAATTAGTATGAAGGTCTTAGGAACAAAATAGGATTTAAACACAGTTTTTATGATTTTATATGTATTCATGGAAGCTGGATTGATGTGTTCATTGATCATCTATCTGCATCTGCAGCTAGCTGCTTTCTAATTGTTGTTCCCAAAATCTAATAGTGGTTTTGTTCAGGTAAAGAGGATTTTGTACAATGATAAATGAATCCTCTTTAATGCAACTACTATTTTTTCCTTTTCTGTAACATAGCATCATTACCAAATAAAAAGGGATAGATATTGAATGGCTGAGGAGGTCTCCATTTGTGTGAAGGATCTCTCTCAATCATGCAATTCATAACATAGAGCTTTTGATGAACAGGATATGGTCCAGCAGGATATGCTTTGTTCGTAGCAGTGTATGCAGGATTGGAGGTACACATATTTTTGCTTTAATACATGTATCTGGAATTTGCCTTTTACATCTATAGAGGTGGCCTTTGTGGTGAGGACTAGGTGGTGTGCCGCAATGATGCTGGCCCCCAAGAGGGGAGGACTGCGAGATTCTATATCGGTTGGAGAGGGGAACAAAGCATTCCTTATGGGTGTGGAAACCTCTCCCTAACAAACGCGTTTTAAAACCTTGAGGGGAAGCCCATAAGGGAAAGCCCAAAGAGGACATTATCTGATAGTGGTGGGTTTGGTCTTAATGACCCTTTAGGTCTTAACCCTTTAGGTCTTATTGTGAAGGATGGAACCCTTTTTTGTATAGTTATCTGTTTGTCTCCTTAGGCGTGGGTTGGTTTTTTTGGTATGCTTGTGTTCCTTTTCTTTTGTATTTCAATGAAACGTGATTTATGGAGATGGGTTCATGAGCACAATACAAGTAGTGGACGATACTTTTAGATGAGTTGAGAGGGATCATAGTGTCGTGTGGTCTCTTGTGAGGTTCTATTAAAGATATCCCTTCGCAGGGACCTGCTCCGAACAGGGTGGAGAATTTCCATTTAAAAGATGAATCGGGGAGGGAGCGGAGAGAGTTTTCTCCCCGTTCTGTACTACCAGGCTTGCGAAGATCCATAACCTTTATGCTGAAACTATGAAAACTGTTTCCCTGTGTTACTTGTTTTTCACTTTTGGCTGATACTTCCATGGTGTCAGTTTCAATATTTTCCATCTGTTATGAAATTTATGGTATATTTTTGTTCCCTTCTAGATCCTTGCAATTCCCGCCATTCCATTAACAATGTCAGCTGGACTCCTGTTTGGCTCTGTAATTGGGACGATTATAGTTTCTATTAGTGGAACGGTGAGTGATTTGTTGAAGTAAAACAAACAGATGGAATAGCATATGGCCGCTAATTATCAGCTCATTGTCTCCAAATATTTCAGGTTGCTGCAAGTGTTGCCTTCTTGATTGCTCGGTATTTCGCTCGTGAGCGTATTCTTAAGCTTGTAGAAGGAAACAAGAAATTTGCTGCCATTGATAAAGCCATTGGAGAAAATGGTTTCAAAGTAGTCACCCTCCTACGTTTGAGCCCTTTGCTTCCATTTTCTCTGGGAAACTATTTATATGGACTCACATCTGTCAAGTTTGTCCCCTACGTGTTAGGAAGGTCAGTTTTCAATTCTCAATTAACCTTACAAAGTTTAATCTTAGCTTTTGTTCTTGACGTTTTTGATTCTCCTTGAATGCAGTTGGCTGGGGATGCTTCCGGGAACGTGGGCTTATGTGAGCGCGGGTGCGTTTGGACGAGCAATTCTTGTAAGTTTCCGATTTGGTTCATCTCTTAAAGATGATTTGAATTCTTAGTTGAGTTTATAATCTTTTACTTGGGATGTTTCAGCAAGAAGAATCTGAAGTTGGTTTGCTAGGAGGAGGAAATGGTCAGCAGCTATGGACGCTGGGACTTGGATTGTTGGCAACCGCGTTTGCTGCTGCATACGTTACACGATTAGCCAAGGTAATGTCACTTTTTTGTGTAAATACTTGCCCTTTTCGGTATACTTACCCATTGCTACCACGTACTTTATGAACGATCTACTCAAATCTAAAATGAACATGATCATCTTAGAGTAGTGTAATAGTCTAAGCCCACCACTAACAGATATGGTCCTCTTTCGACTTTTCCTTTCGAGTTTCCCCTCAGTTTTTAAGCTAGGGAGATGTTTCCACTCTCTTATGAAGAATGTTTCATTCTCTTCCCCATTCGAGTTTCCCCTCAGTTTTTAAGCTAGGGAGATGTTTCCACTCTCTTATAAAGAATGTTTCATTCTCTTCCCCAACCGATATAGAGTTTCACAATTCAATCCCTTTGGGGCCCAGTGTCCTCGTTGGCACTCGTTCCCATCTCCAATCGATATGGGATCTCACAATCCACCCTCATTCAGGGCCCAACGTCCTCGCTGGCACTCGTTCCTCTCTCTGATGTGGAATCTCACAAGTAGTTTATAAGTTGATAAATTCATGTCAATCTAAACATAATTCAGTTGGTTAAAATATTTATCTTCTACCAAGGGGTTATAGGTTAGAATTCCTCCACACTTTTAAGTCATAGTTTAGGATACCAAAATTTTTAGTGTTCGATATTAAATGTCAATATCATAAAACCTAAACTGAGTAGACAGATAGGACTAGATATTTCATGATTGTCAATATAAAATGTAACTGAATTAAGCAATCTTTTCACAAGATTAACTATTATGATCGGCGGATTTTGAAAGGTGATTCTAATGTTATTGCAGGATGCTATGAAGGATATTGAATAGACATGACCCCTTGAGGAATGTAGTAGGTATAAATTAAAATTCATAATTGAATTTTTGAAGAAAATGGCTAATTCTCTGTATATTTTGTATTTGTCCAATTAATAGAGAGCCACTGCTCTTCCTGCTGCTCATGATGTACAATATTTACCATAATCAATATAATTAACTAATCTCTAATTGTGAT AAACAAAACACACACAGAAAATCACAGCAGCAGAAGAAAAAAAAAGAAAACTTCCTTGTTCTTCCTCTTATCCCACAGAGCTCCATTGATGAGCTGATCGGCTTCCACACAATTCTTGTCTCTTCTTTATGATGCGCGCCCATCTCACCTTATGGCCGTCATCTTCAAACCCATCGCCTTATCTTTCTTCTCTCCACTTCTCTCCTCCTCTCTCCTCCTCCTCTTTCCTCTTCAGCTTCACACCCAACAAACGCTTCCACTTCCTCAAGACCTGTTCCTCTCTCAAGCAATCCAAGAAGCCTTCTCTTCAGAAGACTCCCACTACCGCCCCTCAGAGTTTCAAGTGGCTCTTTAGCCCCAAGTCCGACGACGATGACGCCACCGCCGCCGCCGCCGATAAAGGGAATAAGGACGCCGAGGACGATACTGCTCTTAAGGGTACCCTTTTGGCCGGTGTGTTGCTTCTTGGGATTATTGGTGGATTTGCATTTGCTGGATATGTTTACAAGGATCCGATTAATGCGTTCTTGAATCAGTTCTCCACGTTTATTGACGGATATGGTCCAGCAGGATATGCTTTGTTCGTAGCAGTGTATGCAGGATTGGAGATCCTTGCAATTCCCGCCATTCCATTAACAATGTCAGCTGGACTCCTGTTTGGCTCTGTAATTGGGACGATTATAGTTTCTATTAGTGGAACGGTTGCTGCAAGTGTTGCCTTCTTGATTGCTCGGTATTTCGCTCGTGAGCGTATTCTTAAGCTTGTAGAAGGAAACAAGAAATTTGCTGCCATTGATAAAGCCATTGGAGAAAATGGTTTCAAAGTAGTCACCCTCCTACGTTTGAGCCCTTTGCTTCCATTTTCTCTGGGAAACTATTTATATGGACTCACATCTGTCAAGTTTGTCCCCTACGTGTTAGGAAGTTGGCTGGGGATGCTTCCGGGAACGTGGGCTTATGTGAGCGCGGGTGCGTTTGGACGAGCAATTCTTCAAGAAGAATCTGAAGTTGGTTTGCTAGGAGGAGGAAATGGTCAGCAGCTATGGACGCTGGGACTTGGATTGTTGGCAACCGCGTTTGCTGCTGCATACGTTACACGATTAGCCAAGGATGCTATGAAGGATATTGAATAGACATGACCCCTTGAGGAATGTAGTAGGTATAAATTAAAATTCATAATTGAATTTTTGAAGAAAATGGCTAATTCTCTGTATATTTTGTATTTGTCCAATTAATAGAGAGCCACTGCTCTTCCTGCTGCTCATGATGTACAATATTTACCATAATCAATATAATTAACTAATCTCTAATTGTGAT ATGATGCGCGCCCATCTCACCTTATGGCCGTCATCTTCAAACCCATCGCCTTATCTTTCTTCTCTCCACTTCTCTCCTCCTCTCTCCTCCTCCTCTTTCCTCTTCAGCTTCACACCCAACAAACGCTTCCACTTCCTCAAGACCTGTTCCTCTCTCAAGCAATCCAAGAAGCCTTCTCTTCAGAAGACTCCCACTACCGCCCCTCAGAGTTTCAAGTGGCTCTTTAGCCCCAAGTCCGACGACGATGACGCCACCGCCGCCGCCGCCGATAAAGGGAATAAGGACGCCGAGGACGATACTGCTCTTAAGGGTACCCTTTTGGCCGGTGTGTTGCTTCTTGGGATTATTGGTGGATTTGCATTTGCTGGATATGTTTACAAGGATCCGATTAATGCGTTCTTGAATCAGTTCTCCACGTTTATTGACGGATATGGTCCAGCAGGATATGCTTTGTTCGTAGCAGTGTATGCAGGATTGGAGATCCTTGCAATTCCCGCCATTCCATTAACAATGTCAGCTGGACTCCTGTTTGGCTCTGTAATTGGGACGATTATAGTTTCTATTAGTGGAACGGTTGCTGCAAGTGTTGCCTTCTTGATTGCTCGGTATTTCGCTCGTGAGCGTATTCTTAAGCTTGTAGAAGGAAACAAGAAATTTGCTGCCATTGATAAAGCCATTGGAGAAAATGGTTTCAAAGTAGTCACCCTCCTACGTTTGAGCCCTTTGCTTCCATTTTCTCTGGGAAACTATTTATATGGACTCACATCTGTCAAGTTTGTCCCCTACGTGTTAGGAAGTTGGCTGGGGATGCTTCCGGGAACGTGGGCTTATGTGAGCGCGGGTGCGTTTGGACGAGCAATTCTTCAAGAAGAATCTGAAGTTGGTTTGCTAGGAGGAGGAAATGGTCAGCAGCTATGGACGCTGGGACTTGGATTGTTGGCAACCGCGTTTGCTGCTGCATACGTTACACGATTAGCCAAGGATGCTATGAAGGATATTGAATAG
BLAST of CmoCh01G009040.1 vs. Swiss-Prot
Match: Y305_SYNY3 (TVP38/TMEM64 family membrane protein slr0305 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0305 PE=3 SV=1) HSP 1 Score: 134.0 bits (336), Expect = 3.0e-30 Identity = 77/194 (39.69%), Postives = 117/194 (60.31%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. Swiss-Prot
Match: YDJX_ECOLI (TVP38/TMEM64 family membrane protein YdjX OS=Escherichia coli (strain K12) GN=ydjX PE=3 SV=2) HSP 1 Score: 102.1 bits (253), Expect = 1.2e-20 Identity = 56/144 (38.89%), Postives = 87/144 (60.42%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. Swiss-Prot
Match: Y1528_MYCBO (TVP38/TMEM64 family membrane protein Mb1528c OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb1528c PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 5.8e-10 Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. Swiss-Prot
Match: Y1491_MYCTU (TVP38/TMEM64 family membrane protein Rv1491c OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=Rv1491c PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 5.8e-10 Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. Swiss-Prot
Match: Y1491_MYCTO (TVP38/TMEM64 family membrane protein MT1538 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=MT1538 PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 5.8e-10 Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. TrEMBL
Match: A0A0A0KST0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G649300 PE=4 SV=1) HSP 1 Score: 552.4 bits (1422), Expect = 3.9e-154 Identity = 301/340 (88.53%), Postives = 314/340 (92.35%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. TrEMBL
Match: A0A0D2VD99_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G133200 PE=4 SV=1) HSP 1 Score: 473.0 bits (1216), Expect = 3.0e-130 Identity = 260/336 (77.38%), Postives = 284/336 (84.52%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. TrEMBL
Match: A0A067LAW0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17218 PE=4 SV=1) HSP 1 Score: 464.2 bits (1193), Expect = 1.4e-127 Identity = 262/340 (77.06%), Postives = 285/340 (83.82%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. TrEMBL
Match: B9SHP5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0742130 PE=4 SV=1) HSP 1 Score: 463.4 bits (1191), Expect = 2.4e-127 Identity = 263/340 (77.35%), Postives = 284/340 (83.53%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. TrEMBL
Match: A9PH39_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s10500g PE=2 SV=1) HSP 1 Score: 456.4 bits (1173), Expect = 2.9e-125 Identity = 248/321 (77.26%), Postives = 268/321 (83.49%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. TAIR10
Match: AT1G22850.1 (AT1G22850.1 SNARE associated Golgi protein family) HSP 1 Score: 426.8 bits (1096), Expect = 1.2e-119 Identity = 245/337 (72.70%), Postives = 273/337 (81.01%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. TAIR10
Match: AT5G19070.1 (AT5G19070.1 SNARE associated Golgi protein family) HSP 1 Score: 108.2 bits (269), Expect = 9.8e-24 Identity = 77/230 (33.48%), Postives = 120/230 (52.17%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. TAIR10
Match: AT1G03260.1 (AT1G03260.1 SNARE associated Golgi protein family) HSP 1 Score: 104.0 bits (258), Expect = 1.8e-22 Identity = 63/173 (36.42%), Postives = 96/173 (55.49%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. TAIR10
Match: AT2G02370.1 (AT2G02370.1 SNARE associated Golgi protein family) HSP 1 Score: 61.6 bits (148), Expect = 1.0e-09 Identity = 51/181 (28.18%), Postives = 94/181 (51.93%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. TAIR10
Match: AT1G12450.1 (AT1G12450.1 SNARE associated Golgi protein family) HSP 1 Score: 58.9 bits (141), Expect = 6.8e-09 Identity = 50/147 (34.01%), Postives = 77/147 (52.38%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. NCBI nr
Match: gi|659119308|ref|XP_008459587.1| (PREDICTED: uncharacterized protein LOC103498671 [Cucumis melo]) HSP 1 Score: 558.9 bits (1439), Expect = 5.9e-156 Identity = 304/340 (89.41%), Postives = 316/340 (92.94%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. NCBI nr
Match: gi|449447579|ref|XP_004141545.1| (PREDICTED: uncharacterized protein LOC101204460 [Cucumis sativus]) HSP 1 Score: 552.4 bits (1422), Expect = 5.6e-154 Identity = 301/340 (88.53%), Postives = 314/340 (92.35%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. NCBI nr
Match: gi|823263126|ref|XP_012464326.1| (PREDICTED: transmembrane protein 64 [Gossypium raimondii]) HSP 1 Score: 473.0 bits (1216), Expect = 4.3e-130 Identity = 260/336 (77.38%), Postives = 284/336 (84.52%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. NCBI nr
Match: gi|1009141970|ref|XP_015888470.1| (PREDICTED: TVP38/TMEM64 family membrane protein slr0305 [Ziziphus jujuba]) HSP 1 Score: 466.5 bits (1199), Expect = 4.0e-128 Identity = 269/337 (79.82%), Postives = 285/337 (84.57%), Query Frame = 1
BLAST of CmoCh01G009040.1 vs. NCBI nr
Match: gi|802540533|ref|XP_012077039.1| (PREDICTED: transmembrane protein 41B [Jatropha curcas]) HSP 1 Score: 464.2 bits (1193), Expect = 2.0e-127 Identity = 262/340 (77.06%), Postives = 285/340 (83.82%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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