CmoCh01G008830.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G008830.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr01 : 4819817 .. 4820149 (-)
Sequence length	258

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAGAAGTTCATGAGTTTTGGTCTCTTATCGTTTCTTCTCCTCAGCCTTGTATCCAATTCTCACTCTATTGGTAAGCCTTTGATACTCCTAACACCCAAATATGTTGTTTCAATCGCTTAAGTTGTTGGAAATCATTGCATTGCAGATCAATCAAAGACTTGCCCACAACAATTTCTTTCAACAGGAACATGTGGAGGGTGGATTGGAATCTCAGAATGCTACAGTGAATCAATGGCAAGAAATGGAAATATCCCACCAAAGGGCTGCAAATGCATTCCTGATGGTGTGGACTCTCGCATTTGCCGTTGCAATGCTGCCTGTCCCTAA

mRNA sequence

ATGGGGAAGAAGTTCATGAGTTTTGGTCTCTTATCGTTTCTTCTCCTCAGCCTTGTATCCAATTCTCACTCTATTGATCAATCAAAGACTTGCCCACAACAATTTCTTTCAACAGGAACATGTGGAGGGTGGATTGGAATCTCAGAATGCTACAGTGAATCAATGGCAAGAAATGGAAATATCCCACCAAAGGGCTGCAAATGCATTCCTGATGGTGTGGACTCTCGCATTTGCCGTTGCAATGCTGCCTGTCCCTAA

Coding sequence (CDS)

ATGGGGAAGAAGTTCATGAGTTTTGGTCTCTTATCGTTTCTTCTCCTCAGCCTTGTATCCAATTCTCACTCTATTGATCAATCAAAGACTTGCCCACAACAATTTCTTTCAACAGGAACATGTGGAGGGTGGATTGGAATCTCAGAATGCTACAGTGAATCAATGGCAAGAAATGGAAATATCCCACCAAAGGGCTGCAAATGCATTCCTGATGGTGTGGACTCTCGCATTTGCCGTTGCAATGCTGCCTGTCCCTAA

Homology

[Close]

BLAST of CmoCh01G008830.1 vs. TrEMBL
Match: A0A0A0KSV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650550 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.9e-23
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 3  KKFMSFGLLSFLLLSLVSNSHSID---QSKTCPQQFLSTGTCGGWIGISECYSESMARNG 62
          K F+S  LLSFLLL L S +HS D   QSKTCP +F STGTC G  G+SECY E+MA+ G
Sbjct: 4  KTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYG 63

Query: 63 NIPPKGCKCIPDGVDSRICRCNAAC 85
          NIPPKGC+CIPDG +SR C CN  C
Sbjct: 64 NIPPKGCECIPDGANSRFCLCNIIC 88

[Close]

BLAST of CmoCh01G008830.1 vs. TrEMBL
Match: A0A0A0KUV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650540 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 5.4e-12
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1


Query: 26 DQSKTCPQQFLSTGTCGGWIGISECYSESMARNGNIPPKGCKCIPDGVDSRICRCNAAC 85
          DQ +TCP +F STGTC    G + CY E M + GN PPK C+CIP+G +SR C+CN  C
Sbjct: 13 DQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71

[Close]

BLAST of CmoCh01G008830.1 vs. NCBI nr
Match: gi|700197513|gb|KGN52690.1| (hypothetical protein Csa_5G650550 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 9.8e-23
Identity = 55/85 (64.71%), Postives = 63/85 (74.12%), Query Frame = 1


Query: 3  KKFMSFGLLSFLLLSLVSNSHSID---QSKTCPQQFLSTGTCGGWIGISECYSESMARNG 62
          K F+S  LLSFLLL L S +HS D   QSKTCP +F STGTC G  G+SECY E+MA+ G
Sbjct: 4  KTFISLPLLSFLLLCLFSIAHSQDSEDQSKTCPVKFASTGTCSGPFGVSECYHEAMAKYG 63

Query: 63 NIPPKGCKCIPDGVDSRICRCNAAC 85
          NIPPKGC+CIPDG +SR C CN  C
Sbjct: 64 NIPPKGCECIPDGANSRFCLCNIIC 88

[Close]

BLAST of CmoCh01G008830.1 vs. NCBI nr
Match: gi|700197512|gb|KGN52689.1| (hypothetical protein Csa_5G650540 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 7.8e-12
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1


Query: 26 DQSKTCPQQFLSTGTCGGWIGISECYSESMARNGNIPPKGCKCIPDGVDSRICRCNAAC 85
          DQ +TCP +F STGTC    G + CY E M + GN PPK C+CIP+G +SR C+CN  C
Sbjct: 13 DQPRTCPVKFASTGTCQEPYGTAGCYDEVMGKYGNFPPKDCQCIPNGDNSRFCQCNIYC 71

The following BLAST results are available for this feature:

BLAST of CmoCh01G008830.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G008830.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSV3_CUCSA	6.9e-23	64.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650550 PE=4 SV=1	[more]
A0A0A0KUV4_CUCSA	5.4e-12	54.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650540 PE=4 SV=1	[more]

BLAST of CmoCh01G008830.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh01G008830.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197513\|gb\|KGN52690.1\|	9.8e-23	64.71	hypothetical protein Csa_5G650550 [Cucumis sativus]	[more]
gi\|700197512\|gb\|KGN52689.1\|	7.8e-12	54.24	hypothetical protein Csa_5G650540 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010682	SCRL

Vocabulary: **Biological Process**
Term	Definition
GO:0007165	signal transduction

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G008830	CmoCh01G008830	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G008830.1	CmoCh01G008830.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G008830.1.CDS.2	CmoCh01G008830.1.CDS.2	CDS
CmoCh01G008830.1.CDS.1	CmoCh01G008830.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G008830.1.exon.2	CmoCh01G008830.1.exon.2	exon
CmoCh01G008830.1.exon.1	CmoCh01G008830.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010682	Plant self-incompatibility response	PFAM	PF06876	SCRL	coord: 13..81 score: 1.