CmoCh01G000100.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G000100.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DUF1677 family protein
Location	Cmo_Chr01 : 33434 .. 33823 (-)
Sequence length	390

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTATTGGGCAAATGGAAGTTGAATTTTTTGCCAACTGTGAGTGTTGTGGGCTGTCGGAGGAGTGTACAGAGGCTTACATCGAGGGAGTCCGCCGCCGATTCGACGGAAAATGGATTTGCGGCCTGTGTTCGGAGGCAGTTCAAGACGAGATTCTCAAGTCCGACGTCGTACTAATCACCACCGAGGAAGCCATGGCCAAGCACATGAGCTTCTGCAAGAAATTCGCCGCCACCGCAGGGCCACCTCCGGACCCGACGCCCCATCTCATAACGGCAATGAGACAGATCCTCCGCCGCAGTTTACTCCCCAAGAGCCTTGAGGTCCAAGCGGACCAGTCGAACCTCCGGCGCAGACAAAATACGCGGCCGGGTTCTTGGTTGACATGA

mRNA sequence

ATGCTTATTGGGCAAATGGAAGTTGAATTTTTTGCCAACTGTGAGTGTTGTGGGCTGTCGGAGGAGTGTACAGAGGCTTACATCGAGGGAGTCCGCCGCCGATTCGACGGAAAATGGATTTGCGGCCTGTGTTCGGAGGCAGTTCAAGACGAGATTCTCAAGTCCGACGTCGTACTAATCACCACCGAGGAAGCCATGGCCAAGCACATGAGCTTCTGCAAGAAATTCGCCGCCACCGCAGGGCCACCTCCGGACCCGACGCCCCATCTCATAACGGCAATGAGACAGATCCTCCGCCGCAGTTTACTCCCCAAGAGCCTTGAGGTCCAAGCGGACCAGTCGAACCTCCGGCGCAGACAAAATACGCGGCCGGGTTCTTGGTTGACATGA

Coding sequence (CDS)

ATGCTTATTGGGCAAATGGAAGTTGAATTTTTTGCCAACTGTGAGTGTTGTGGGCTGTCGGAGGAGTGTACAGAGGCTTACATCGAGGGAGTCCGCCGCCGATTCGACGGAAAATGGATTTGCGGCCTGTGTTCGGAGGCAGTTCAAGACGAGATTCTCAAGTCCGACGTCGTACTAATCACCACCGAGGAAGCCATGGCCAAGCACATGAGCTTCTGCAAGAAATTCGCCGCCACCGCAGGGCCACCTCCGGACCCGACGCCCCATCTCATAACGGCAATGAGACAGATCCTCCGCCGCAGTTTACTCCCCAAGAGCCTTGAGGTCCAAGCGGACCAGTCGAACCTCCGGCGCAGACAAAATACGCGGCCGGGTTCTTGGTTGACATGA

Homology

[Close]

BLAST of CmoCh01G000100.1 vs. TrEMBL
Match: A0A0A0L915_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G644790 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 3.8e-41
Identity = 92/126 (73.02%), Postives = 103/126 (81.75%), Query Frame = 1


Query: 1   MLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLI 60
           +LIGQM+VEF A CECCGL+EECT AYIEG+RRRFDGKWICGLCSEAVQDEILKS  + I
Sbjct: 16  VLIGQMDVEF-AKCECCGLTEECTGAYIEGIRRRFDGKWICGLCSEAVQDEILKSHEI-I 75

Query: 61  TTEEAMAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSL-LPKSLEVQ------ADQ 120
           TTEEA+AKHM+F KKFAA  GPPPDPTPHLITAMRQILRRSL  P++L         A  
Sbjct: 76  TTEEAIAKHMNFRKKFAAAIGPPPDPTPHLITAMRQILRRSLDSPRALRSSPATPSTAAD 135

[Close]

BLAST of CmoCh01G000100.1 vs. TrEMBL
Match: V7AT81_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G128400g PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.4e-34
Identity = 73/102 (71.57%), Postives = 90/102 (88.24%), Query Frame = 1


Query: 1   MLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLI 60
           ML+GQ EVEF A C+CCGL+EECT AYIE +R R+ GKW+CGLC+EAV+DEI++S+  L+
Sbjct: 23  MLVGQSEVEF-AVCDCCGLTEECTPAYIERIRERYHGKWVCGLCAEAVKDEIVRSE-RLV 82

Query: 61  TTEEAMAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSL 103
           +TEEAMAKHM+FCKKF A +GPPP+PT HLI+AMRQILRRSL
Sbjct: 83  STEEAMAKHMNFCKKFKA-SGPPPNPTVHLISAMRQILRRSL 121

[Close]

BLAST of CmoCh01G000100.1 vs. TrEMBL
Match: A0A0B2S4K3_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_020696 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.9e-34
Identity = 70/102 (68.63%), Postives = 90/102 (88.24%), Query Frame = 1


Query: 1   MLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLI 60
           +L+ Q EVEF A C+CCGL+EECT AYIE +R R+ GKW+CGLC+EAV+DEI++S+  L+
Sbjct: 26  ILVAQSEVEF-AVCDCCGLTEECTPAYIERIRERYFGKWVCGLCAEAVKDEIVRSE-RLV 85

Query: 61  TTEEAMAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSL 103
           +TEEAMAKHM+FCKKF A++GPPP+PT HLI+AMRQILRR+L
Sbjct: 86  STEEAMAKHMNFCKKFKASSGPPPNPTVHLISAMRQILRRTL 125

[Close]

BLAST of CmoCh01G000100.1 vs. TrEMBL
Match: I1MK18_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G009000 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.9e-34
Identity = 70/102 (68.63%), Postives = 90/102 (88.24%), Query Frame = 1


Query: 1   MLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLI 60
           +L+ Q EVEF A C+CCGL+EECT AYIE +R R+ GKW+CGLC+EAV+DEI++S+  L+
Sbjct: 26  ILVAQSEVEF-AVCDCCGLTEECTPAYIERIRERYFGKWVCGLCAEAVKDEIVRSE-RLV 85

Query: 61  TTEEAMAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSL 103
           +TEEAMAKHM+FCKKF A++GPPP+PT HLI+AMRQILRR+L
Sbjct: 86  STEEAMAKHMNFCKKFKASSGPPPNPTVHLISAMRQILRRTL 125

[Close]

BLAST of CmoCh01G000100.1 vs. TrEMBL
Match: A0A061GBP7_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029159 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.9e-33
Identity = 72/101 (71.29%), Postives = 87/101 (86.14%), Query Frame = 1


Query: 2   LIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLIT 61
           L+ Q EVEF A C+CCGL+EECT AYIE VR R+ GKWICGLC+EAV+DEI++S+  LI+
Sbjct: 26  LVAQSEVEF-AKCDCCGLTEECTPAYIERVRERYQGKWICGLCAEAVKDEIIRSE-RLIS 85

Query: 62  TEEAMAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSL 103
           TEEAMA+HM+FCKKF  ++GPPPDPT HLI+AMR ILRRSL
Sbjct: 86  TEEAMARHMNFCKKF-VSSGPPPDPTVHLISAMRSILRRSL 123

[Close]

BLAST of CmoCh01G000100.1 vs. TAIR10
Match: AT1G72510.1 (AT1G72510.1 Protein of unknown function (DUF1677))

HSP 1 Score: 126.3 bits (316), Expect = 1.3e-29
Identity = 58/89 (65.17%), Postives = 77/89 (86.52%), Query Frame = 1


Query: 14  CECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLITTEEAMAKHMSFC 73
           C+CCGL+EECT++YIE VR R+ GKWICGLCSEAV+ E++++   L+TTEEAMA+HM+ C
Sbjct: 39  CDCCGLTEECTQSYIEMVRERYMGKWICGLCSEAVKYEVMRTK-RLLTTEEAMARHMNMC 98

Query: 74  KKFAATAGPPPDPTPHLITAMRQILRRSL 103
            KF +++ PPP+PT HLI+AMRQILR+SL
Sbjct: 99  NKFKSSS-PPPNPTGHLISAMRQILRKSL 125

[Close]

BLAST of CmoCh01G000100.1 vs. TAIR10
Match: AT2G09970.1 (AT2G09970.1 Protein of unknown function (DUF1677))

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-24
Identity = 50/89 (56.18%), Postives = 70/89 (78.65%), Query Frame = 1


Query: 14  CECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLITTEEAMAKHMSFC 73
           C+CCGL++ECTE+Y E +R R+ GKWI G CSEAV+ +++++   L T EEAMA+HM+ C
Sbjct: 39  CDCCGLTDECTESYTEMIRERYIGKWISGFCSEAVKYKVMRTKRFLTTEEEAMARHMNKC 98

Query: 74  KKFAATAGPPPDPTPHLITAMRQILRRSL 103
            KF +++ PP + T HLI+AMRQILR+SL
Sbjct: 99  NKFKSSS-PPSNLTRHLISAMRQILRKSL 126

[Close]

BLAST of CmoCh01G000100.1 vs. TAIR10
Match: AT3G22540.1 (AT3G22540.1 Protein of unknown function (DUF1677))

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-20
Identity = 46/95 (48.42%), Postives = 61/95 (64.21%), Query Frame = 1


Query: 6   MEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLITTEEA 65
           ME+E    CECCGL E+CT+ YI  V+  FD KW+CGLCSEAV+DE+ +    + T +EA
Sbjct: 1   MEIES-VRCECCGLMEDCTQDYISEVKSNFDNKWLCGLCSEAVRDEVSRRK--MTTVDEA 60

Query: 66  MAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRR 101
           +  H+SFC KF        +P  H+   MRQ+LRR
Sbjct: 61  VKAHVSFCGKF-----KKDNPAVHVADGMRQMLRR 87

[Close]

BLAST of CmoCh01G000100.1 vs. TAIR10
Match: AT4G14819.1 (AT4G14819.1 Protein of unknown function (DUF1677))

HSP 1 Score: 94.0 bits (232), Expect = 7.4e-20
Identity = 55/117 (47.01%), Postives = 67/117 (57.26%), Query Frame = 1


Query: 6   MEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLITTEEA 65
           ME+E    CECCGL E+CT+ YI  V+  F GKW+CGLCSEAV DE  +S     T EEA
Sbjct: 1   MEIES-VTCECCGLMEDCTQHYISKVKANFAGKWLCGLCSEAVSDEFSRSSK---TVEEA 60

Query: 66  MAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSLLPKSLEVQADQSNLRRRQNT 123
           +  HMSFC KF A      +P   +   MRQ+LRR    +S E+    S    R NT
Sbjct: 61  VNAHMSFCGKFNA------NPAELVADGMRQMLRR----RSGELSPKMSKKFGRSNT 103

[Close]

BLAST of CmoCh01G000100.1 vs. TAIR10
Match: AT1G54095.1 (AT1G54095.1 Protein of unknown function (DUF1677))

HSP 1 Score: 87.0 bits (214), Expect = 9.0e-18
Identity = 46/95 (48.42%), Postives = 59/95 (62.11%), Query Frame = 1


Query: 11  FANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILK--SDVVLITTEEAMAK 70
           FA CECCG+ EE T  YIE VR  + GK+ICGLCSEAV+ EI +       I  +EA+A 
Sbjct: 18  FARCECCGMKEEYTAGYIESVRCLYAGKFICGLCSEAVKYEIFRCGKKQRRIGVDEALAI 77

Query: 71  HMSFCKKFAATAGPPPDPTPHLITAMRQILRRSLL 104
           HM FC +F A+    P PT   I A+ +I +R L+
Sbjct: 78  HMKFCSEFVAS----PSPTVDFIFAIGEIFKRRLI 108

[Close]

BLAST of CmoCh01G000100.1 vs. NCBI nr
Match: gi|659120694|ref|XP_008460310.1| (PREDICTED: uncharacterized protein LOC103499169 [Cucumis melo])

HSP 1 Score: 183.7 bits (465), Expect = 2.0e-43
Identity = 95/126 (75.40%), Postives = 105/126 (83.33%), Query Frame = 1


Query: 1   MLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLI 60
           +LIGQM+VEF A CECCGL+EECT AYIEG+RRRFDGKWICGLCSEAVQDEILKSD  LI
Sbjct: 16  VLIGQMDVEF-AKCECCGLTEECTGAYIEGIRRRFDGKWICGLCSEAVQDEILKSD-ELI 75

Query: 61  TTEEAMAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSL-LPKSLE------VQADQ 120
           TTEEA+AKHMSFCKKFAA  GPPPDPTPHLI+AMRQILRRSL  P++L         A  
Sbjct: 76  TTEEAIAKHMSFCKKFAAAVGPPPDPTPHLISAMRQILRRSLDSPRALRSSPATPTTAAD 135

[Close]

BLAST of CmoCh01G000100.1 vs. NCBI nr
Match: gi|700203307|gb|KGN58440.1| (hypothetical protein Csa_3G644790 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 5.5e-41
Identity = 92/126 (73.02%), Postives = 103/126 (81.75%), Query Frame = 1


Query: 1   MLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLI 60
           +LIGQM+VEF A CECCGL+EECT AYIEG+RRRFDGKWICGLCSEAVQDEILKS  + I
Sbjct: 16  VLIGQMDVEF-AKCECCGLTEECTGAYIEGIRRRFDGKWICGLCSEAVQDEILKSHEI-I 75

Query: 61  TTEEAMAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSL-LPKSLEVQ------ADQ 120
           TTEEA+AKHM+F KKFAA  GPPPDPTPHLITAMRQILRRSL  P++L         A  
Sbjct: 76  TTEEAIAKHMNFRKKFAAAIGPPPDPTPHLITAMRQILRRSLDSPRALRSSPATPSTAAD 135

[Close]

BLAST of CmoCh01G000100.1 vs. NCBI nr
Match: gi|593266498|ref|XP_007135427.1| (hypothetical protein PHAVU_010G128400g [Phaseolus vulgaris])

HSP 1 Score: 152.5 bits (384), Expect = 4.9e-34
Identity = 73/102 (71.57%), Postives = 90/102 (88.24%), Query Frame = 1


Query: 1   MLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLI 60
           ML+GQ EVEF A C+CCGL+EECT AYIE +R R+ GKW+CGLC+EAV+DEI++S+  L+
Sbjct: 23  MLVGQSEVEF-AVCDCCGLTEECTPAYIERIRERYHGKWVCGLCAEAVKDEIVRSE-RLV 82

Query: 61  TTEEAMAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSL 103
           +TEEAMAKHM+FCKKF A +GPPP+PT HLI+AMRQILRRSL
Sbjct: 83  STEEAMAKHMNFCKKFKA-SGPPPNPTVHLISAMRQILRRSL 121

[Close]

BLAST of CmoCh01G000100.1 vs. NCBI nr
Match: gi|356558965|ref|XP_003547772.1| (PREDICTED: uncharacterized protein LOC100799109 [Glycine max])

HSP 1 Score: 151.8 bits (382), Expect = 8.4e-34
Identity = 70/102 (68.63%), Postives = 90/102 (88.24%), Query Frame = 1


Query: 1   MLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLI 60
           +L+ Q EVEF A C+CCGL+EECT AYIE +R R+ GKW+CGLC+EAV+DEI++S+  L+
Sbjct: 26  ILVAQSEVEF-AVCDCCGLTEECTPAYIERIRERYFGKWVCGLCAEAVKDEIVRSE-RLV 85

Query: 61  TTEEAMAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSL 103
           +TEEAMAKHM+FCKKF A++GPPP+PT HLI+AMRQILRR+L
Sbjct: 86  STEEAMAKHMNFCKKFKASSGPPPNPTVHLISAMRQILRRTL 125

[Close]

BLAST of CmoCh01G000100.1 vs. NCBI nr
Match: gi|951033496|ref|XP_014515731.1| (PREDICTED: uncharacterized protein LOC106773555 [Vigna radiata var. radiata])

HSP 1 Score: 150.2 bits (378), Expect = 2.5e-33
Identity = 72/102 (70.59%), Postives = 89/102 (87.25%), Query Frame = 1


Query: 1   MLIGQMEVEFFANCECCGLSEECTEAYIEGVRRRFDGKWICGLCSEAVQDEILKSDVVLI 60
           +L+GQ EVEF A C+CCGL+EECT AYIE +R R+ GKW+CGLC+EAV+DEI++S+  L+
Sbjct: 23  ILVGQSEVEF-AVCDCCGLTEECTPAYIERIRERYHGKWVCGLCAEAVKDEIVRSE-RLV 82

Query: 61  TTEEAMAKHMSFCKKFAATAGPPPDPTPHLITAMRQILRRSL 103
            TEEAMAKHM+FCKKF A +GPPP+PT HLI+AMRQILRRSL
Sbjct: 83  CTEEAMAKHMNFCKKFKA-SGPPPNPTVHLISAMRQILRRSL 121

The following BLAST results are available for this feature:

BLAST of CmoCh01G000100.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh01G000100.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L915_CUCSA	3.8e-41	73.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G644790 PE=4 SV=1	[more]
V7AT81_PHAVU	3.4e-34	71.57	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G128400g PE=4 SV=1	[more]
A0A0B2S4K3_GLYSO	5.9e-34	68.63	Uncharacterized protein OS=Glycine soja GN=glysoja_020696 PE=4 SV=1	[more]
I1MK18_SOYBN	5.9e-34	68.63	Uncharacterized protein OS=Glycine max GN=GLYMA_16G009000 PE=4 SV=1	[more]
A0A061GBP7_THECC	2.9e-33	71.29	Uncharacterized protein OS=Theobroma cacao GN=TCM_029159 PE=4 SV=1	[more]

BLAST of CmoCh01G000100.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G72510.1	1.3e-29	65.17	Protein of unknown function (DUF1677)	[more]
AT2G09970.1	1.3e-24	56.18	Protein of unknown function (DUF1677)	[more]
AT3G22540.1	5.6e-20	48.42	Protein of unknown function (DUF1677)	[more]
AT4G14819.1	7.4e-20	47.01	Protein of unknown function (DUF1677)	[more]
AT1G54095.1	9.0e-18	48.42	Protein of unknown function (DUF1677)	[more]

BLAST of CmoCh01G000100.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659120694\|ref\|XP_008460310.1\|	2.0e-43	75.40	PREDICTED: uncharacterized protein LOC103499169 [Cucumis melo]	[more]
gi\|700203307\|gb\|KGN58440.1\|	5.5e-41	73.02	hypothetical protein Csa_3G644790 [Cucumis sativus]	[more]
gi\|593266498\|ref\|XP_007135427.1\|	4.9e-34	71.57	hypothetical protein PHAVU_010G128400g [Phaseolus vulgaris]	[more]
gi\|356558965\|ref\|XP_003547772.1\|	8.4e-34	68.63	PREDICTED: uncharacterized protein LOC100799109 [Glycine max]	[more]
gi\|951033496\|ref\|XP_014515731.1\|	2.5e-33	70.59	PREDICTED: uncharacterized protein LOC106773555 [Vigna radiata var. radiata]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR012876	DUF1677_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh01G000100	CmoCh01G000100	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh01G000100.1	CmoCh01G000100.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G000100.1.CDS.1	CmoCh01G000100.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh01G000100.1.exon.1	CmoCh01G000100.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012876	Protein of unknown function DUF1677, plant	PFAM	PF07911	DUF1677	coord: 12..100 score: 1.8
None	No IPR available	PANTHER	PTHR33108	FAMILY NOT NAMED	coord: 1..126 score: 3.0
None	No IPR available	PANTHER	PTHR33108:SF15	SUBFAMILY NOT NAMED	coord: 1..126 score: 3.0