CmaCh20G010230.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh20G010230.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Serine carboxypeptidase-like 51
Location	Cma_Chr20 : 7357134 .. 7357677 (+)
Sequence length	364

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCCCATATGTTTTGGTGACTTTACAGAAGCCCTTCCAGAGTGGACGTCGGTTCCAAGCCATGGTCGACCATTCTCTGGTTGCAGGGCGGACCGGTGAGCTGTCGATCTTTTCCAATGATTTATTTATAAATTTTGAGTATTTTATAAGAAAATGGCTAAAATATTGAAAAACAGGGTGGCTCGAGAACTGGGTTTGGGAACTTCCTAGAAATCGGGCCATTGAACTCGAACTTGAAGCCGAGAAACTCAACATGGCTGAAAAAAGCAGACCTCTTGTTTGTGGTCAACTCCTTTTCCTTTTAATTTTCATCATTTTAACCTTAAATTCTAATATTTTTCGACTAAATTTATGATTTTAACATTAAAAAAAACAGGATAATCCGGTCGGGACCGGATATAGCTATGTGGAGAGTGGAGGTGAATTTGCGAAAGGCGATGTGGAGACGGCGATCGACATGACGACTTTGCTGGTTGAGGTTTCGAAAGACACTGTCGGCCTACGAAACGCTCCTTTGTACATCTTTGCGGAGTCTTACGGTGGA

mRNA sequence

AAGCCCATATGTTTTGGTGACTTTACAGAAGCCCTTCCAGAGTGGACGTCGGTTCCAAGCCATGGTCGACCATTCTCTGGTTGCAGGGCGGACCGGGTGGCTCGAGAACTGGGTTTGGGAACTTCCTAGAAATCGGGCCATTGAACTCGAACTTGAAGCCGAGAAACTCAACATGGCTGAAAAAAGCAGACCTCTTGATAATCCGGTCGGGACCGGATATAGCTATGTGGAGAGTGGAGGTGAATTTGCGAAAGGCGATGTGGAGACGGCGATCGACATGACGACTTTGCTGGTTGAGGTTTCGAAAGACACTGTCGGCCTACGAAACGCTCCTTTGTACATCTTTGCGGAGTCTTACGGTGGA

Coding sequence (CDS)

ATGGTCGACCATTCTCTGGTTGCAGGGCGGACCGGGTGGCTCGAGAACTGGGTTTGGGAACTTCCTAGAAATCGGGCCATTGAACTCGAACTTGAAGCCGAGAAACTCAACATGGCTGAAAAAAGCAGACCTCTTGATAATCCGGTCGGGACCGGATATAGCTATGTGGAGAGTGGAGGTGAATTTGCGAAAGGCGATGTGGAGACGGCGATCGACATGACGACTTTGCTGGTTGAGGTTTCGAAAGACACTGTCGGCCTACGAAACGCTCCTTTGTACATCTTTGCGGAGTCTTACGGTGGA

Protein sequence

MVDHSLVAGRTGWLENWVWELPRNRAIELELEAEKLNMAEKSRPLDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG

Homology

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BLAST of CmaCh20G010230.1 vs. Swiss-Prot
Match: RISC_HUMAN (Retinoid-inducible serine carboxypeptidase OS=Homo sapiens GN=SCPEP1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.0e-07
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +DNPVGTG+SYV   G +AK     A DM  LL          +  P YIF+ESYGG
Sbjct: 114 VDNPVGTGFSYVNGSGAYAKDLAMVASDMMVLLKTFFSCHKEFQTVPFYIFSESYGG 170

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BLAST of CmaCh20G010230.1 vs. Swiss-Prot
Match: SCP51_ARATH (Serine carboxypeptidase-like 51 OS=Arabidopsis thaliana GN=SCPL51 PE=2 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.5e-06
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGE--FAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +D+PVG GYS+VE   +  + K D E A D+T LL ++      L  +PL+I AESYGG
Sbjct: 111 VDSPVGAGYSFVEGNQKDLYVKSDEEAAQDLTKLLQQLFNKNQTLNQSPLFIVAESYGG 169

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BLAST of CmaCh20G010230.1 vs. TrEMBL
Match: A0A0A0KGL0_CUCSA (Carboxypeptidase OS=Cucumis sativus GN=Csa_6G149370 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +DNPVGTGYS+V++ G+FAKGD + A DMTTLL +VS +T+GL N P YIFAESYGG
Sbjct: 115 VDNPVGTGYSFVDNLGQFAKGDWDAANDMTTLLTKVSNNTIGLHNTPFYIFAESYGG 171

[Close]

BLAST of CmaCh20G010230.1 vs. TrEMBL
Match: A0A161Y785_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006134 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-10
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +DNPVGTGYS+VE  G F K DVE A D+TTLL+ V      L+ +PLYI AESYGG
Sbjct: 111 VDNPVGTGYSFVEDDGLFVKTDVEAATDLTTLLISVFNQDKVLQKSPLYIVAESYGG 167

[Close]

BLAST of CmaCh20G010230.1 vs. TrEMBL
Match: K4D9Q9_SOLLC (Carboxypeptidase OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-10
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +DNPVGTGYS+VE    F K DVE A D+TTLL+E+      L+ +PLYI AESYGG
Sbjct: 113 VDNPVGTGYSFVEDKKLFVKTDVEAATDLTTLLIEIFNKNQSLQQSPLYIVAESYGG 169

[Close]

BLAST of CmaCh20G010230.1 vs. TrEMBL
Match: A0A067EYZ4_CITSI (Carboxypeptidase (Fragment) OS=Citrus sinensis GN=CISIN_1g0122372mg PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-10
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +DNPVGTGYSYVE    F K DVE A D+TTLL+E+      L+ +PL+I AESYGG
Sbjct: 113 VDNPVGTGYSYVEDNSSFVKNDVEAANDLTTLLMELFNKNEILQKSPLFIVAESYGG 169

[Close]

BLAST of CmaCh20G010230.1 vs. TrEMBL
Match: A0A067FAU7_CITSI (Carboxypeptidase OS=Citrus sinensis GN=CISIN_1g0122372mg PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.6e-10
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +DNPVGTGYSYVE    F K DVE A D+TTLL+E+      L+ +PL+I AESYGG
Sbjct: 113 VDNPVGTGYSYVEDNSSFVKNDVEAANDLTTLLMELFNKNEILQKSPLFIVAESYGG 169

[Close]

BLAST of CmaCh20G010230.1 vs. TAIR10
Match: AT2G27920.1 (AT2G27920.1 serine carboxypeptidase-like 51)

HSP 1 Score: 53.5 bits (127), Expect = 8.6e-08
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGE--FAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +D+PVG GYS+VE   +  + K D E A D+T LL ++      L  +PL+I AESYGG
Sbjct: 111 VDSPVGAGYSFVEGNQKDLYVKSDEEAAQDLTKLLQQLFNKNQTLNQSPLFIVAESYGG 169

[Close]

BLAST of CmaCh20G010230.1 vs. NCBI nr
Match: gi|778722139|ref|XP_011658413.1| (PREDICTED: serine carboxypeptidase-like 51 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.6e-14
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +DNPVGTGYS+V++ G+FAKGD + A DMTTLL +VS +T+GL N P YIFAESYGG
Sbjct: 115 VDNPVGTGYSFVDNLGQFAKGDWDAANDMTTLLTKVSNNTIGLHNTPFYIFAESYGG 171

[Close]

BLAST of CmaCh20G010230.1 vs. NCBI nr
Match: gi|659130944|ref|XP_008465432.1| (PREDICTED: LOW QUALITY PROTEIN: serine carboxypeptidase-like 51 [Cucumis melo])

HSP 1 Score: 83.2 bits (204), Expect = 2.9e-13
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +DNPVGTGYS+VES G+FAK D + A DMTTLL ++S +T+ L N P YIFAESYGG
Sbjct: 113 VDNPVGTGYSFVESLGQFAKSDWDAADDMTTLLTKLSNNTINLNNTPFYIFAESYGG 169

[Close]

BLAST of CmaCh20G010230.1 vs. NCBI nr
Match: gi|1021047517|gb|KZN05297.1| (hypothetical protein DCAR_006134 [Daucus carota subsp. sativus])

HSP 1 Score: 73.2 bits (178), Expect = 3.0e-10
Identity = 35/57 (61.40%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +DNPVGTGYS+VE  G F K DVE A D+TTLL+ V      L+ +PLYI AESYGG
Sbjct: 111 VDNPVGTGYSFVEDDGLFVKTDVEAATDLTTLLISVFNQDKVLQKSPLYIVAESYGG 167

[Close]

BLAST of CmaCh20G010230.1 vs. NCBI nr
Match: gi|698520050|ref|XP_009804891.1| (PREDICTED: serine carboxypeptidase-like 51 [Nicotiana sylvestris])

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +DNPVGTGYS+VE    F K DVE A D+TTLL+E+      L+ +PLYI AESYGG
Sbjct: 117 VDNPVGTGYSFVEDNKLFVKTDVEAATDLTTLLIEIFNRNQSLQQSPLYIVAESYGG 173

[Close]

BLAST of CmaCh20G010230.1 vs. NCBI nr
Match: gi|460411178|ref|XP_004250991.1| (PREDICTED: serine carboxypeptidase-like 51 [Solanum lycopersicum])

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-10
Identity = 34/57 (59.65%), Postives = 41/57 (71.93%), Query Frame = 1


Query: 45  LDNPVGTGYSYVESGGEFAKGDVETAIDMTTLLVEVSKDTVGLRNAPLYIFAESYGG 102
           +DNPVGTGYS+VE    F K DVE A D+TTLL+E+      L+ +PLYI AESYGG
Sbjct: 113 VDNPVGTGYSFVEDKKLFVKTDVEAATDLTTLLIEIFNKNQSLQQSPLYIVAESYGG 169

The following BLAST results are available for this feature:

BLAST of CmaCh20G010230.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RISC_HUMAN	9.0e-07	47.37	Retinoid-inducible serine carboxypeptidase OS=Homo sapiens GN=SCPEP1 PE=1 SV=1	[more]
SCP51_ARATH	1.5e-06	45.76	Serine carboxypeptidase-like 51 OS=Arabidopsis thaliana GN=SCPL51 PE=2 SV=2	[more]

BLAST of CmaCh20G010230.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGL0_CUCSA	1.8e-14	68.42	Carboxypeptidase OS=Cucumis sativus GN=Csa_6G149370 PE=3 SV=1	[more]
A0A161Y785_DAUCA	2.1e-10	61.40	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_006134 PE=4 SV=1	[more]
K4D9Q9_SOLLC	3.5e-10	59.65	Carboxypeptidase OS=Solanum lycopersicum PE=3 SV=1	[more]
A0A067EYZ4_CITSI	4.6e-10	59.65	Carboxypeptidase (Fragment) OS=Citrus sinensis GN=CISIN_1g0122372mg PE=3 SV=1	[more]
A0A067FAU7_CITSI	4.6e-10	59.65	Carboxypeptidase OS=Citrus sinensis GN=CISIN_1g0122372mg PE=3 SV=1	[more]

BLAST of CmaCh20G010230.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G27920.1	8.6e-08	45.76	serine carboxypeptidase-like 51	[more]

BLAST of CmaCh20G010230.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722139\|ref\|XP_011658413.1\|	2.6e-14	68.42	PREDICTED: serine carboxypeptidase-like 51 [Cucumis sativus]	[more]
gi\|659130944\|ref\|XP_008465432.1\|	2.9e-13	66.67	PREDICTED: LOW QUALITY PROTEIN: serine carboxypeptidase-like 51 [Cucumis melo]	[more]
gi\|1021047517\|gb\|KZN05297.1\|	3.0e-10	61.40	hypothetical protein DCAR_006134 [Daucus carota subsp. sativus]	[more]
gi\|698520050\|ref\|XP_009804891.1\|	3.9e-10	59.65	PREDICTED: serine carboxypeptidase-like 51 [Nicotiana sylvestris]	[more]
gi\|460411178\|ref\|XP_004250991.1\|	5.1e-10	59.65	PREDICTED: serine carboxypeptidase-like 51 [Solanum lycopersicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001563	Peptidase_S10

Vocabulary: **Molecular Function**
Term	Definition
GO:0004185	serine-type carboxypeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004185	serine-type carboxypeptidase activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh20G010230	CmaCh20G010230	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh20G010230.1	CmaCh20G010230.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G010230.1.exon.1	CmaCh20G010230.1.exon.1	exon
CmaCh20G010230.1.exon.2	CmaCh20G010230.1.exon.2	exon
CmaCh20G010230.1.exon.3	CmaCh20G010230.1.exon.3	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G010230.1.five_prime_UTR.1	CmaCh20G010230.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh20G010230.1.CDS.1	CmaCh20G010230.1.CDS.1	CDS
CmaCh20G010230.1.CDS.2	CmaCh20G010230.1.CDS.2	CDS
CmaCh20G010230.1.CDS.3	CmaCh20G010230.1.CDS.3	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001563	Peptidase S10, serine carboxypeptidase	PANTHER	PTHR11802	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	coord: 46..101 score: 9.6
IPR001563	Peptidase S10, serine carboxypeptidase	PFAM	PF00450	Peptidase_S10	coord: 45..101 score: 4.
None	No IPR available	PANTHER	PTHR11802:SF3	RETINOID-INDUCIBLE SERINE CARBOXYPEPTIDASE	coord: 46..101 score: 9.6