CmaCh20G009140.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAGCCACCGTGGCATGGCAGCTCTACGGAGGTCTTGAACTTGCATGACTTGTCGAAAACCGCTTCTCGAACCTTATACAAAAAAATAGAGGTGGTTGAAGGCTATGGAGGAAAAGGAACTGATCTTAATCTCATTTTCCCACTAGGTAATAGTTTGAGAGTTGTTTTATTGAAGACTTGTTTTTATTGATGTCTCAATTTTATGTAAATGTCTTGATGATGTTAATGTATATTTCTAAGACAAAATTATATATATATAAAAAAGAAGGTAATATAAAAAGAATATTTAATACTTATATTATATTATATTAAGGACATTTTTTTTTCTTATGTTCTAAATTTATTTAAAATATCTTGATTTTTTCTTTTAAAATGTGAATTATACCCAAGAATTGGCCTCCTTTAAACATAGTAAATTAAAAATGAAATTCTTATAAAAAATATTTGATGATGTTAATGTAGTTTGGTGTTATTAATGATTTTGATGTTTTATTTGAGGTTTACTTGGAATGGGTTTGAGTGGAATAATTTTTACTGAAAAGGGTTTTAATAATTAAAACTAAAAACCCAAATAGTTATCAAATAGAGGTTTAATAAACACCATCAATGGTAAATATAACCTAATCAATTGTAGGTTGAATTGAATTATTAATTATTTTAGAGAGAAATTTGATTTAAATACAATTAAGTCAATGATCATTATAATACTAAATCATAATACTACTAAACTTTAGATACTAAATTGTTACGAATTTAAAAATTATAAGAGTAAATACACGTGTAAGAGTGTCGACTTAATCTACATACTAACATGTAGGAGGTTTGATATATAAGGTTAAACTAGAGCACGCCATGTGGATTTGATTTAACGACACAAAAATTTACATACAAATGCAGGTGTAGGTCGTTTCTCAAGTTGTAAAGAGAAATTCACAAGAATAGATAATGAAAATCGTATAAAAGAGACAAACATGGTGGAAGGAGGGTTCTTGGATATCGGGTTTACTCTCTATGGGGTTCGCTTGAAGATCATTGAAAATGGTGATGATAGCTGCATTGTTGAATCCACCATTGAATATGAAGTAAAGGAAGAAGCTGCTGCTAATGCCTCACTTGTTAATATACAATTTCTCATAGACATTGCTCAAACAGCAAACGACCATCTACTTCACAACAAACAGCCTAAAGATGCG CAGCCACCGTGGCATGGCAGCTCTACGGAGGTCTTGAACTTGCATGACTTGTCGAAAACCGCTTCTCGAACCTTATACAAAAAAATAGAGGTGGTTGAAGGCTATGGAGGAAAAGGAACTGATCTTAATCTCATTTTCCCACTAGGTGTAGGTCGTTTCTCAAGTTGTAAAGAGAAATTCACAAGAATAGATAATGAAAATCGTATAAAAGAGACAAACATGGTGGAAGGAGGGTTCTTGGATATCGGGTTTACTCTCTATGGGGTTCGCTTGAAGATCATTGAAAATGGTGATGATAGCTGCATTGTTGAATCCACCATTGAATATGAAGTAAAGGAAGAAGCTGCTGCTAATGCCTCACTTGTTAATATACAATTTCTCATAGACATTGCTCAAACAGCAAACGACCATCTACTTCACAACAAACAGCCTAAAGATGCG CAGCCACCGTGGCATGGCAGCTCTACGGAGGTCTTGAACTTGCATGACTTGTCGAAAACCGCTTCTCGAACCTTATACAAAAAAATAGAGGTGGTTGAAGGCTATGGAGGAAAAGGAACTGATCTTAATCTCATTTTCCCACTAGGTGTAGGTCGTTTCTCAAGTTGTAAAGAGAAATTCACAAGAATAGATAATGAAAATCGTATAAAAGAGACAAACATGGTGGAAGGAGGGTTCTTGGATATCGGGTTTACTCTCTATGGGGTTCGCTTGAAGATCATTGAAAATGGTGATGATAGCTGCATTGTTGAATCCACCATTGAATATGAAGTAAAGGAAGAAGCTGCTGCTAATGCCTCACTTGTTAATATACAATTTCTCATAGACATTGCTCAAACAGCAAACGACCATCTACTTCACAACAAACAGCCTAAAGATGCG QPPWHGSSTEVLNLHDLSKTASRTLYKKIEVVEGYGGKGTDLNLIFPLGVGRFSSCKEKFTRIDNENRIKETNMVEGGFLDIGFTLYGVRLKIIENGDDSCIVESTIEYEVKEEAAANASLVNIQFLIDIAQTANDHLLHNKQPKDA
BLAST of CmaCh20G009140.1 vs. Swiss-Prot
Match: NCS2_PAPSO (S-norcoclaurine synthase 2 OS=Papaver somniferum GN=NCS2 PE=1 SV=1) HSP 1 Score: 97.8 bits (242), Expect = 1.0e-19 Identity = 51/119 (42.86%), Postives = 79/119 (66.39%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. Swiss-Prot
Match: NCS1_PAPSO (S-norcoclaurine synthase 1 OS=Papaver somniferum GN=NCS1 PE=1 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 5.1e-19 Identity = 50/119 (42.02%), Postives = 78/119 (65.55%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. Swiss-Prot
Match: NCS_THLFG (S-norcoclaurine synthase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 3.8e-14 Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. Swiss-Prot
Match: NCS2_COPJA (S-norcoclaurine synthase 2 OS=Coptis japonica GN=PR10A PE=2 SV=2) HSP 1 Score: 73.6 bits (179), Expect = 2.1e-12 Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. TrEMBL
Match: A0A0A0LNC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G439140 PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 7.4e-41 Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. TrEMBL
Match: I1LP68_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G017100 PE=4 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 1.5e-30 Identity = 72/123 (58.54%), Postives = 94/123 (76.42%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. TrEMBL
Match: A0A0B2SNQ7_GLYSO (S-norcoclaurine synthase OS=Glycine soja GN=glysoja_035139 PE=4 SV=1) HSP 1 Score: 140.6 bits (353), Expect = 1.5e-30 Identity = 72/123 (58.54%), Postives = 94/123 (76.42%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. TrEMBL
Match: C6SWU2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 140.2 bits (352), Expect = 2.0e-30 Identity = 71/123 (57.72%), Postives = 94/123 (76.42%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. TrEMBL
Match: A0A151TLT9_CAJCA (S-norcoclaurine synthase OS=Cajanus cajan GN=KK1_021617 PE=4 SV=1) HSP 1 Score: 139.0 bits (349), Expect = 4.5e-30 Identity = 70/118 (59.32%), Postives = 92/118 (77.97%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. NCBI nr
Match: gi|449460704|ref|XP_004148085.1| (PREDICTED: S-norcoclaurine synthase-like [Cucumis sativus]) HSP 1 Score: 174.9 bits (442), Expect = 1.1e-40 Identity = 89/121 (73.55%), Postives = 104/121 (85.95%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. NCBI nr
Match: gi|659118565|ref|XP_008459186.1| (PREDICTED: S-norcoclaurine synthase-like [Cucumis melo]) HSP 1 Score: 170.6 bits (431), Expect = 2.0e-39 Identity = 85/121 (70.25%), Postives = 102/121 (84.30%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. NCBI nr
Match: gi|659133168|ref|XP_008466590.1| (PREDICTED: S-norcoclaurine synthase-like [Cucumis melo]) HSP 1 Score: 160.6 bits (405), Expect = 2.1e-36 Identity = 81/121 (66.94%), Postives = 100/121 (82.64%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. NCBI nr
Match: gi|502144138|ref|XP_004505590.1| (PREDICTED: S-norcoclaurine synthase-like [Cicer arietinum]) HSP 1 Score: 147.1 bits (370), Expect = 2.4e-32 Identity = 73/123 (59.35%), Postives = 93/123 (75.61%), Query Frame = 1
BLAST of CmaCh20G009140.1 vs. NCBI nr
Match: gi|734432857|gb|KHN46463.1| (S-norcoclaurine synthase [Glycine soja]) HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30 Identity = 72/123 (58.54%), Postives = 94/123 (76.42%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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