CmaCh17G005010.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCTTCCCCCATAAACCCATTTCCTTTCATTCTTTCTCCTTTCTAACTCACAATCTTTCAACCAAAATGAAGGTCTTTACGTCCCTCTAACCCTACTCTTTCCATTTTCTTCATACTCTCTTTATTCATTTATTCACCACTTTCTTTCTTACTTCAGATCTTCAACTGGGTGCACAAGACTTTTCATCACACCGCTCTCAAGGGTTTCTCTCTCAAACGTCTCATTTTACTTCATTTTTTCATAGAGATCGAAAAAAATTAACTTTTTATAAGTACAAATATTTCAATTTTGAATTGTTCCAACGAGTTCAACTATTGCCGAGGTGCGAGATCGATCCATCTAACTTTTAAGATTGTTATTTTTTTCTAGAGGGTTATACTCAAAATGCGACGAAGAAGACCGAAACCGCAACCATTAATGAAGTGGACAGGCAAGCATTGTTGAAGCAAGTAGATCTTGATGTGGAAGCCCTTCATGACTGGAGAGATGGCATTCTCACCATTGGTACATTCGGGTTCGAATCATTGAAACCATCGAACAAGCAAATGGAGTATCTCGTGCTCAAGAGCGAAGACAATGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAGGAAGAGAAATCGTTCGTTCATGAGGAAGACAACGATAGTATCGATTTTGTGGACGATGAAGAGCTAAACCCTTTGATGTTCACAACATTTGGACACAAATCAAAGGATGTAAATGGGGAGAAAGGTGGTGATTTGATCATTGGAGCTTATGAGCTGAATATGAATATGGAATCAAAATACAATGAGATTATGGAGATGGAGGAGGATGAGGAGAAGAAGAAAGTGGAAAGGAGAATAACACTGGCGGACTTGTTCTTGGCGGATGCTGGAGATGTGGCGAAAGCACTTGAGAATGAAAAAGTGCTTCAAAAAAAAACAGGTGATGTTAGAACTAAGAGTGGCCTCTCCTTTGCCAAGAAGCTTATCCCTCGAGTTAAGGAGGATTCACATCCCATTAAGAATCTTCAACGAGTGAGTAATGTTGTTTTTTTTTTTTTCGTGGATTTTAATGATTTTTTGAGACAGCCACCAAAACATAATCTTTAAAGAAAAAGACCAAATCAAAAGCAAATCCGAAGTACAAATCATGCATGATGACGTGTTATGATGCCACGTGTACGCAGTTGATGAGAAGGATGCTGAAGAGGAAGATCCACCCAGAGATTGAAGACAAGATCAACAAAGCATCATCATCTGACCAAACTCACCAAATAGGAACACCCAACCATGAAGGATTTGAAGGCTTTGAAGCCCTCTCTCTTCTTCCAATTCAAGGTAAATTATACACTCTTCTCTTATTCCTATATTAAACACTAAAACCCTAATTTTTCTTTTTGTTTCGAAGTAATTTGAATATAAGTTCGAAAACGTTTCATAATAATAAGAAGCAAAAGCGAGTAACAGTTACTAATGCTTATATTTCCAAATAACTTGAAACACGAAACATAAAACAAGAAAGAAGAACATTACCAAACCCTAATCCAATAACCTAACCAAAGAGTATTATTTTCTTTGTGATACTTAATTGTGAGATGCCACATCAATTAAGGAGGAGAACGAAATATTCTTGATAAGCGTGTAGAAACTTCTTCCTAATAAATGCGTTTTAAAAATTTAGAAGAGAAACCCGAATGAAAAAGCTAATGTTGCACTGGTACAGAAATTGAATCCATTTCACAGTCAACAGCCGAGAAGTAAAATCCAAGAGAGAAGGGGTCAAAGAAATTGGTCGCAAATCTTTTCCTATCATACAATTCTTGCTTATTAGATGAACATATGAAATCCCAGCAATCTTGTGGGGTTATCAGACGTCTAATCCACACACTGCAATTAGTGGGGACACTTCAATTATTTATTTACTCCATCAAAATTCTCTGTTTTGAATTATAATATCTTGTTTCTCTGATCAGTGCTTGGATTTGGTGTGTTTTCCATGTGCAGATGCAGTTGCCTGATGGATTTAATTAATGGGTGTCTTCTAAATATGGCTCTGATTGCTTAGAGTTATGCTTAATTATCTTATGGTAATTATCAAAAACAATGTTTATTCTTGTTATTATTATGATTATTATTAGTAATTTTGTTCATTAGATCTTGTTGTATATGAAGTTTAATTAAGACTACTTCATTCTGTTCTGTAAGCTATTTTGATGTTGTTTTGGCTTAGCATACAAGTCATGGAAGTGTGGTTTGTCGGTCCGTTCTTGGCGTTTCATTTGTTGGTTAAATTATTCATCTCCAATCAAAATATTGTTCATTATTTA CCTTCCCCCATAAACCCATTTCCTTTCATTCTTTCTCCTTTCTAACTCACAATCTTTCAACCAAAATGAAGATCTTCAACTGGGTGCACAAGACTTTTCATCACACCGCTCTCAAGGAGGGTTATACTCAAAATGCGACGAAGAAGACCGAAACCGCAACCATTAATGAAGTGGACAGGCAAGCATTGTTGAAGCAAGTAGATCTTGATGTGGAAGCCCTTCATGACTGGAGAGATGGCATTCTCACCATTGGTACATTCGGGTTCGAATCATTGAAACCATCGAACAAGCAAATGGAGTATCTCGTGCTCAAGAGCGAAGACAATGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAGGAAGAGAAATCGTTCGTTCATGAGGAAGACAACGATAGTATCGATTTTGTGGACGATGAAGAGCTAAACCCTTTGATGTTCACAACATTTGGACACAAATCAAAGGATGTAAATGGGGAGAAAGGTGGTGATTTGATCATTGGAGCTTATGAGCTGAATATGAATATGGAATCAAAATACAATGAGATTATGGAGATGGAGGAGGATGAGGAGAAGAAGAAAGTGGAAAGGAGAATAACACTGGCGGACTTGTTCTTGGCGGATGCTGGAGATGTGGCGAAAGCACTTGAGAATGAAAAAGTGCTTCAAAAAAAAACAGGTGATGTTAGAACTAAGAGTGGCCTCTCCTTTGCCAAGAAGCTTATCCCTCGAGTTAAGGAGGATTCACATCCCATTAAGAATCTTCAACGATTGATGAGAAGGATGCTGAAGAGGAAGATCCACCCAGAGATTGAAGACAAGATCAACAAAGCATCATCATCTGACCAAACTCACCAAATAGGAACACCCAACCATGAAGGATTTGAAGGCTTTGAAGCCCTCTCTCTTCTTCCAATTCAAGATGCAGTTGCCTGATGGATTTAATTAATGGGTGTCTTCTAAATATGGCTCTGATTGCTTAGAGTTATGCTTAATTATCTTATGGTAATTATCAAAAACAATGTTTATTCTTGTTATTATTATGATTATTATTAGTAATTTTGTTCATTAGATCTTGTTGTATATGAAGTTTAATTAAGACTACTTCATTCTGTTCTGTAAGCTATTTTGATGTTGTTTTGGCTTAGCATACAAGTCATGGAAGTGTGGTTTGTCGGTCCGTTCTTGGCGTTTCATTTGTTGGTTAAATTATTCATCTCCAATCAAAATATTGTTCATTATTTA ATGAAGATCTTCAACTGGGTGCACAAGACTTTTCATCACACCGCTCTCAAGGAGGGTTATACTCAAAATGCGACGAAGAAGACCGAAACCGCAACCATTAATGAAGTGGACAGGCAAGCATTGTTGAAGCAAGTAGATCTTGATGTGGAAGCCCTTCATGACTGGAGAGATGGCATTCTCACCATTGGTACATTCGGGTTCGAATCATTGAAACCATCGAACAAGCAAATGGAGTATCTCGTGCTCAAGAGCGAAGACAATGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAAGAGGAAGAGAAATCGTTCGTTCATGAGGAAGACAACGATAGTATCGATTTTGTGGACGATGAAGAGCTAAACCCTTTGATGTTCACAACATTTGGACACAAATCAAAGGATGTAAATGGGGAGAAAGGTGGTGATTTGATCATTGGAGCTTATGAGCTGAATATGAATATGGAATCAAAATACAATGAGATTATGGAGATGGAGGAGGATGAGGAGAAGAAGAAAGTGGAAAGGAGAATAACACTGGCGGACTTGTTCTTGGCGGATGCTGGAGATGTGGCGAAAGCACTTGAGAATGAAAAAGTGCTTCAAAAAAAAACAGGTGATGTTAGAACTAAGAGTGGCCTCTCCTTTGCCAAGAAGCTTATCCCTCGAGTTAAGGAGGATTCACATCCCATTAAGAATCTTCAACGATTGATGAGAAGGATGCTGAAGAGGAAGATCCACCCAGAGATTGAAGACAAGATCAACAAAGCATCATCATCTGACCAAACTCACCAAATAGGAACACCCAACCATGAAGGATTTGAAGGCTTTGAAGCCCTCTCTCTTCTTCCAATTCAAGATGCAGTTGCCTGA MKIFNWVHKTFHHTALKEGYTQNATKKTETATINEVDRQALLKQVDLDVEALHDWRDGILTIGTFGFESLKPSNKQMEYLVLKSEDNEEEEEEEEEEEEEEEKSFVHEEDNDSIDFVDDEELNPLMFTTFGHKSKDVNGEKGGDLIIGAYELNMNMESKYNEIMEMEEDEEKKKVERRITLADLFLADAGDVAKALENEKVLQKKTGDVRTKSGLSFAKKLIPRVKEDSHPIKNLQRLMRRMLKRKIHPEIEDKINKASSSDQTHQIGTPNHEGFEGFEALSLLPIQDAVA
BLAST of CmaCh17G005010.1 vs. TrEMBL
Match: A0A0A0KCK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107930 PE=4 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 5.3e-99 Identity = 210/296 (70.95%), Postives = 238/296 (80.41%), Query Frame = 1
BLAST of CmaCh17G005010.1 vs. TrEMBL
Match: U3MMQ4_PRUPE (TAC1 OS=Prunus persica PE=4 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 1.0e-49 Identity = 143/305 (46.89%), Postives = 194/305 (63.61%), Query Frame = 1
BLAST of CmaCh17G005010.1 vs. TrEMBL
Match: A0A0S3SZ53_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.09G176900 PE=4 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 4.9e-44 Identity = 128/262 (48.85%), Postives = 169/262 (64.50%), Query Frame = 1
BLAST of CmaCh17G005010.1 vs. TrEMBL
Match: A0A061E038_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_005082 PE=4 SV=1) HSP 1 Score: 185.7 bits (470), Expect = 8.3e-44 Identity = 136/299 (45.48%), Postives = 183/299 (61.20%), Query Frame = 1
BLAST of CmaCh17G005010.1 vs. TrEMBL
Match: A0A0L9VQN5_PHAAN (Uncharacterized protein (Fragment) OS=Phaseolus angularis GN=LR48_Vigan11g020900 PE=4 SV=1) HSP 1 Score: 183.7 bits (465), Expect = 3.1e-43 Identity = 126/262 (48.09%), Postives = 169/262 (64.50%), Query Frame = 1
BLAST of CmaCh17G005010.1 vs. TAIR10
Match: AT2G46640.3 (AT2G46640.3 unknown protein) HSP 1 Score: 66.2 bits (160), Expect = 3.7e-11 Identity = 87/307 (28.34%), Postives = 142/307 (46.25%), Query Frame = 1
BLAST of CmaCh17G005010.1 vs. NCBI nr
Match: gi|778712188|ref|XP_011656860.1| (PREDICTED: uncharacterized protein LOC101216403 isoform X2 [Cucumis sativus]) HSP 1 Score: 374.0 bits (959), Expect = 2.4e-100 Identity = 211/296 (71.28%), Postives = 240/296 (81.08%), Query Frame = 1
BLAST of CmaCh17G005010.1 vs. NCBI nr
Match: gi|659119603|ref|XP_008459743.1| (PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A isoform X2 [Cucumis melo]) HSP 1 Score: 373.6 bits (958), Expect = 3.1e-100 Identity = 210/295 (71.19%), Postives = 239/295 (81.02%), Query Frame = 1
BLAST of CmaCh17G005010.1 vs. NCBI nr
Match: gi|449445710|ref|XP_004140615.1| (PREDICTED: uncharacterized protein LOC101216403 isoform X1 [Cucumis sativus]) HSP 1 Score: 369.0 bits (946), Expect = 7.6e-99 Identity = 210/296 (70.95%), Postives = 238/296 (80.41%), Query Frame = 1
BLAST of CmaCh17G005010.1 vs. NCBI nr
Match: gi|659119601|ref|XP_008459742.1| (PREDICTED: U3 small nucleolar RNA-associated protein 14 homolog A isoform X1 [Cucumis melo]) HSP 1 Score: 368.6 bits (945), Expect = 9.9e-99 Identity = 209/295 (70.85%), Postives = 237/295 (80.34%), Query Frame = 1
BLAST of CmaCh17G005010.1 vs. NCBI nr
Match: gi|1009176779|ref|XP_015869614.1| (PREDICTED: uncharacterized protein LOC107406908, partial [Ziziphus jujuba]) HSP 1 Score: 215.3 bits (547), Expect = 1.4e-52 Identity = 157/308 (50.97%), Postives = 200/308 (64.94%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
|