CmaCh14G020570.1 (mRNA) Cucurbita maxima (Rimu)

Overview
NameCmaCh14G020570.1
TypemRNA
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr14 : 14300199 .. 14302558 (-)
Sequence length1850
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGGGTTTAACTGGTTATTTTCCTATCTTTTGATTGGTGAATGTACAATATCTTGTCTTGCTTGTCATAGTATAGCCTGTGTAAGAATACTTTATGTTTTCTTAATTTTGTGGTTTGAGTGTGTAATGTTGTACTATGAAATGAGAATGAAATGGAAAAGTATATCATGTTCAAGTAGAAGCTTTGCTGACTAAAGTTTTCTTTACCGGTCACATGCTATAATTATAGCCACTGGATTATGACATTGTGTCTCTTAAAACTTTGTTTGCTGATGCAGTGACAGATGGAAAAGATCAGAAGCATGAGTTTTCATGCGGTGTGTCGCGGTCTAGAACCGCCAACCTTGCCGGTGAACATTTGCGAGTTAGCTGCACAAATTGGCAGTGGGGTTGTGAATTGTACTTGATGGTTGGATCCTTCTCACATCTTGAACATTTTCCTTATCTTATCTCATCGTTTTCCTAGTTTTTTCTGGCATATAACTTCATTTACTCGCTAGTTGCTTTTAAAGAGAAATCAAGATGACATTCTATGGGTGAGTCCAGCCTACCTATATTAATCATAACTGTGCTGGAAAGGTAAAATACAGGTCTTACAGAACATTTTTAGATAGATTTTTATGCCATCGGTAACGATATATTGACTCGATATAGCTTTTTCTGGTACACAGCAAGAAAGCTTCATGCATGACTTATTTGATATGAGCATTTTCTCAACTCGACTGCTTCAATTGGTATAGTGTCCTCCGGAAATTTGCATGTTGTAATCTTTTCTTCCCCCTGATCGGGTAACAGACTGCACGGTGGAGGAGTAACCTGGCTGGTTATTCCCTCAACATCAGTGCAAGTCCATGGCTGTTTCTTGGCCTTTGGTGCCATGCTGATTGTCACATTGGAAATGCAGATGTCTGTAAATGAGTCACCCGAAATTCCCTCCAATCTCGCTGCCATTGTTGCGTTTTCAACGACTATATCCCTGTAGTTGATTCCTTGAATTACAGGCAATGCGTGGGGGTCGTATTTCTTATCAGCATGTGACCCGTAATTGCCTGTCATCCAAAATGCCCATTTCATGGTATGCATTGTCATCCTCCTTACATATATGTCTTTTACATATCCTCCCCTTCCTATGCCAGTTTTGATCCTAACCCCGGATTCGGAATTGATGGCTGTGATGTCTTCGGCTCGGACATCTTGGATCCCACCCGACATCTCACTTCCCAATGCAATGACAGCACTTGTAGGTGAAATGCACGTGAGGCGTCTGATGACCAGTTGCTTAGTCGGCCATCCAAATCTTATGCCATACTCATCCCAACCACTCTTAACAGCTACACAATCATCTCCAGATACTATGTAACAATCTTCAATTCTAACGTTTGTGCAGGAATCTGCAGATGAATTCGGTCATTGGTTTAACAAGATGTATAAAACTACTTCTCGAAAAGTTCGAGTTGCTTTGGTGAACAAACCTGGGTTGATACCGTCTGTATTCGGAGATCGAACTGGAGCGATAATGGTGATGCCTTGAATAACAAGGTTGCTGCATAGCATTTGCAAGTGAATCAAATCTGGGAATGTTGAATGTTGTACTCATTGTTCCTACGAAATAACTAATTGGTTACCTGCTGTAAACAGGATGAACATTCCAAGATGGAGAATTCAGCAGGGTCAGATTCGATATCTGTATATTGCTGGAATACATGATCTCGATCAAGTACGGTCGGGTGTACTTAAGCTTTCCCTGATGAAACAGCTGCCACCAGCGATCACCCTGACCGTCAATCGTACCATTGTTTCCTGATGTCGATTGTGTTGCACTCAAATTTTCAGACACCAGTCAAGAAAAATGAGAGACAGACGGAGGGTATATCAGTGGGACATTTACCTGTGATGACAACATCAGTGAGATTTGTTCCAAAGATTAAACTGATGTACCGTCCCCCCGATGTGTCCCTTCCATGACCGTAGGATGGCAGCGGTTCGACCACAGACCATTCGTTCAGATCCTATCAAAGAAGTTGAAAATCAGTCAATTTTAGATGAAAATCAGTCCTTAAATTATAGTCGTTGAATCGACAAGTCTAGTTGATTTAAGATTTTTTCGACTCGATGATTTTGTAAGATGGGGATGGACCTTAACCTTAGAGTCGGTTGAACAACTTTAGCTGACCTAACCACAGTAAGTGTTTGGATTTCAAATGGTTAAGGCATAATTTAAGGGCCTAATTTTACATGGAATCCAATGGATTTCAAAATCATTCAATTTCTTGTTGTTTGTTTTAGAACCACTTAGAAAAAGTTGGTGAAGAACCTGCCCCAACTTTTGACCCATCAGCTCAAGACACCAATGTCTT

mRNA sequence

ATGAAAGGGTTTAACTGGTTATTTTCCTATCTTTTGATTGTGACAGATGGAAAAGATCAGAAGCATGAGTTTTCATGCGGTGTGTCGCGGTCTAGAACCGCCAACCTTGCCGGTGAACATTTGCGAGTTAGCTGCACAAATTGGCAGTGGGGTTGTGAATTGTACTTGATGGTTGGATCCTTCTCACATCTTGAACATTTTCCTTATCTTATCTCATCGTTTTCCTAGTTTTTTCTGGCATATAACTTCATTTACTCGCTAGTTGCTTTTAAAGAGAAATCAAGATGACATTCTATGGGTGAGTCCAGCCTACCTATATTAATCATAACTGTGCTGGAAAGGTAAAATACAGGTCTTACAGAACATTTTTAGATAGATTTTTATGCCATCGGTAACGATATATTGACTCGATATAGCTTTTTCTGGTACACAGCAAGAAAGCTTCATGCATGACTTATTTGATATGAGCATTTTCTCAACTCGACTGCTTCAATTGATGTCTGTAAATGAGTCACCCGAAATTCCCTCCAATCTCGCTGCCATTGTTGCGTTTTCAACGACTATATCCCTGTAGTTGATTCCTTGAATTACAGGCAATGCGTGGGGGTCGTATTTCTTATCAGCATGTGACCCGTAATTGCCTGTCATCCAAAATGCCCATTTCATGGTATGCATTGTCATCCTCCTTACATATATGTCTTTTACATATCCTCCCCTTCCTATGCCAGTTTTGATCCTAACCCCGGATTCGGAATTGATGGCTGTGATGTCTTCGGCTCGGACATCTTGGATCCCACCCGACATCTCACTTCCCAATGCAATGACAGCACTTGTAGGTGAAATGCACGTGAGGCGTCTGATGACCAGTTGCTTAGTCGGCCATCCAAATCTTATGCCATACTCATCCCAACCACTCTTAACAGCTACACAATCATCTCCAGATACTATGTAACAATCTTCAATTCTAACGTTTGTGCAGGAATCTGCAGATGAATTCGGTCATTGGTTTAACAAGATGTATAAAACTACTTCTCGAAAAGTTCGAGTTGCTTTGGTGAACAAACCTGGGTTGATACCGTCTGTATTCGGAGATCGAACTGGAGCGATAATGGTGATGCCTTGAATAACAAGGATGAACATTCCAAGATGGAGAATTCAGCAGGGTCAGATTCGATATCTGTATATTGCTGGAATACATGATCTCGATCAAGTACGGTCGGGTGTACTTAAGCTTTCCCTGATGAAACAGCTGCCACCAGCGATCACCCTGACCGTCAATCGTACCATTGTTTCCTGATGTCGATTGTGTTGCACTCAAATTTTCAGACACCAGTCAAGAAAAATGAGAGACAGACGGAGGGTATATCAGTGGGACATTTACCTGTGATGACAACATCAGTGAGATTTGTTCCAAAGATTAAACTGATGTACCGTCCCCCCGATGTGTCCCTTCCATGACCGTAGGATGGCAGCGGTTCGACCACAGACCATTCGTTCAGATCCTATCAAAGAAGTTGAAAATCAGTCAATTTTAGATGAAAATCAGTCCTTAAATTATAGTCGTTGAATCGACAAGTCTAGTTGATTTAAGATTTTTTCGACTCGATGATTTTGTAAGATGGGGATGGACCTTAACCTTAGAGTCGGTTGAACAACTTTAGCTGACCTAACCACAGTAAGTGTTTGGATTTCAAATGGTTAAGGCATAATTTAAGGGCCTAATTTTACATGGAATCCAATGGATTTCAAAATCATTCAATTTCTTGTTGTTTGTTTTAGAACCACTTAGAAAAAGTTGGTGAAGAACCTGCCCCAACTTTTGACCCATCAGCTCAAGACACCAATGTCTT

Coding sequence (CDS)

ATGAAAGGGTTTAACTGGTTATTTTCCTATCTTTTGATTGTGACAGATGGAAAAGATCAGAAGCATGAGTTTTCATGCGGTGTGTCGCGGTCTAGAACCGCCAACCTTGCCGGTGAACATTTGCGAGTTAGCTGCACAAATTGGCAGTGGGGTTGTGAATTGTACTTGATGGTTGGATCCTTCTCACATCTTGAACATTTTCCTTATCTTATCTCATCGTTTTCCTAG

Protein sequence

MKGFNWLFSYLLIVTDGKDQKHEFSCGVSRSRTANLAGEHLRVSCTNWQWGCELYLMVGSFSHLEHFPYLISSFS
Homology
The following BLAST results are available for this feature:
BLAST of CmaCh14G020570.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh14G020570.1 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of CmaCh14G020570.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh14G020570.1 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmaCh14G020570CmaCh14G020570gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmaCh14G020570.1CmaCh14G020570.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh14G020570.1.three_prime_UTR.3CmaCh14G020570.1.three_prime_UTR.3three_prime_UTR
CmaCh14G020570.1.three_prime_UTR.2CmaCh14G020570.1.three_prime_UTR.2three_prime_UTR
CmaCh14G020570.1.three_prime_UTR.1CmaCh14G020570.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh14G020570.1.CDS.2CmaCh14G020570.1.CDS.2CDS
CmaCh14G020570.1.CDS.1CmaCh14G020570.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmaCh14G020570.1.exon.4CmaCh14G020570.1.exon.4exon
CmaCh14G020570.1.exon.3CmaCh14G020570.1.exon.3exon
CmaCh14G020570.1.exon.2CmaCh14G020570.1.exon.2exon
CmaCh14G020570.1.exon.1CmaCh14G020570.1.exon.1exon