CmaCh13G003560.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CAAAAATGCTTCCCGGAAAGATATTTTGGTTCCCACGATTGTGAAGCTCGGATAAGCCATGGAGACTCTTTCTATGGTTACATGCTTCACCTGCAAGCAGACTCCACCGCCAACCAGATTCCTATCTCGCACAGCTACAGCATTATCTCATTTGCAGAAATCAAAGCTCCCTATTCCATTATCGCGAACAAGAATTCGGGCAGGTTTGTTCTCCCATACTTCTTTTCACATTGTTAGCTTGATTTTCCAGTGGAACTGAGAAGAGCGTAATGACGCGATCTTAGAATCGAAGTTAGGAGTCATTTTTTGGAATTTCGGTTTGGTGATTTGATATTCTATCAATTCTGTCAAATTAGAAGACTGTTCGGTTGCTTCAATTGGAAGGTGATTATAATAGGGGAATTTGAAGTTTTTTCCACCGAAATTCAACAGCGTTTTGACAAGAAACTGAACGCTTTGTTCTTAACTCCATATACGTAGAGATAGGGAATTAATAGGTAGTCTTACTTCTCCCATGTAACTCAGTTTTCATTGATCCCAACTTCAAGGATACTAGGATGTGAAAAGATTATTCGTTTGAGTTGTTGACGTATTCTAACTTCTAAGCTACGTTTCCTAAAGGAATTGGCAATTTACTGTGAAAAGCCAAAGTTACTAAGTCCTATTCTTCAGAAAAGCCAGTTTTCATGCGGTTCCTCTCCTTAGAAGAACCAATGGCTGAAGAATGATGTCAAGCTATTATGCGATCCCAGGATGACTCATGATATTTTTTTTTTTTAAGAATCAGAGAGATACTAGAAAATAGAGCTTAGAGAACAATGATTTTTCCCGCATCTTCCTCCTTCATTCGAGTGGTAAATGCTCACTCACTCTCTCACTGCGTGATTTCTTCACTTAGAGTTGTGAATCTAGTAAAAGTCGAAGGCTAAGAAGAATGTGTCAAAAGTTGAGATAACGTCTGGATACGATAATCAGACGATTCACCACAGAATAACAGAATAGGAAGAACCACTTTTGAATCAACTTGAGTTATCAAGTCAATAGTTATAATTAAGAACTAGGATAAGTAGGGTGGGTAGCAGCTAATATTTACTAATGCAGTAGGATTAGTGGTAAATTCATGTTAAGCTTAATTCTTAGTGGATTACTTTGTTAATGCCTTTAGTATCTGTTTTTATTTTTATATTCCCTTTAGACTAGAATCTCTCTCATGTATTCAATAATATTTGATGCAAAGCCTTTGGTTTGAGGGGAACATTAGAACTTTCAATGATAAAGCAAAAAAACATAGATTACTGCCTTGACAATGTTTATTTTATAGGCTTCTCATGGTGTAAACTGTATCCTTCCTTCAATGGCTATCTGTAATTTTTTTTTTGCTTTGAGGCTTTGTTTTTCTTCCCTCTGTTCGTAATTTGTTAATTTAATACCATCTATGAAATTCCTGTTTGCTTACTAAAAATGTATATCATCTTGTTAAATTTTCTTCAATTAATTTGATTTTACAAACTATCTAATGGGCTTGAATGCCTTTTTATACGTAACTTTTTAATTCATGTTTTTTAAAAATAAATTCAGTAATATTAATATGTTTTCTTAAAATATTCTTTATATACGAAAAGGATATTATTATTATTTTACTATTTTTTTAATCAAGTAGGATATTATCAACTTCAAAAGTTTTGGTATCATTAATATATAGCAATTGTTTTTTTTTTGTTCTTACAATAATATATTATACAACTCATCATTCAGCCTTTTTCTAATTTTCGTAATGAAAAATATTAATTTTCATGAAGTTATTGATTAAATTGCATGTTATCTATGCATAGATACTCATTAACTATTTATTAATAATTGTTTATATTAGATATAAGTACATAGTAATTTACTCGGCTATTTGAAACTTACAAAGATTTTGTCCTCTTCTTTTGGCTTTGTACTATTGACACGATGCTTGTGATTTTCCTTGCATTTTCATTAGTAGTTTCTTTACTACAAGTAGTTTATTATTGTTATTTTCTGGCAGCCTATTCCAATGCTTTTAACTTTAAGTTGGCTAACTAGCGCATACTGATCTTCACATAGTGTCTTGTTTTTTCAGTAAGTGAAATTGCAGAAGAGGATGTTCTACAAGCATTCTTTGAGGAACGAAAACTAAATGCAGATTTTATATCAAAAACTTCTGATATGCTTTGGCAGAGGGAGGTCATGAAATTCGAAGATGTGACTGACGACAGATTTACTGATACTTCCCAAGAAGTACTGGTACAATATGCTTAGCATTTTCAATGCTTTCAGTTTCAATGTTCAATTTATGATAGCATTTCAATGCTTAGTGTTTATGATGTCAAAGGGAGGTCTGTGCATGACAGCCAGCCATTGGAAACTAATTAATATGTTTCTACAATAATGAACGAACATATTTGTATCGTCACTTTGGTACCCTAGTATCATTTTATTCCTCTAGCAGTATGGTAGCAGATATCATCCAACTTAGTGTAAGTAGATAAAACACATGCTCAATCATGTCAAGTTAGGTGAAGAAAATGATAAAAGTTGTGGTTATGCCCATCTAAACTTTCAGGAAGATGAACAAATAACACAAAATGTTCTATATAAGAATTGTTTGTAAAATTTTTTTGGCTATAGTAGAAGGAAAAGATACTGAATGTGAGTTCCCACATATGCTGTTGAAATCAATTTTTTATTTGCACTACATGTACTGTACGTTACACCAAATTGGTGAGTTTCATGTAATTTTGAAATCTTTGTTAATTTTCTGAAAACTAAACTGTATTTTGAATGGTTTTATCAATGCTTAAAATGCACTAAAACGTTGTTCTGCTTTTTTTACCTTTTTCAGAGGATAGTGCAAACTCTTGTTTTTTCCCTTTAATTCTTGATTTACAACTTGTAGGTTGATGAAAACGATGATGGTGGTGGGTTTTTGAAATTGTCCGCCACTCAAGCATGGGTCTCAGGTGGTAACTCTGCACCAATCAATAAAAAAGTTGGTGATAAGGTGTGCCTGCTCCAGCTCTTATATTATGAGTTATAGAAGTGATTTTATATGTGGTTTCCATGAACCAGTTTAATTGCTCTGGACTAGTGGCCAGATAAGATCAGCCAATCACTTCTGCAGAAGACTAACTTTCCTTAATTCCTCTATTTTCTTTAACAGATACTTCCAGATGACCGTGAAAGAAGGAAGAAACTAAATTTTCTCAAATATGAAGCTGTATGATACTTGAACTCAGTATGTTCATTGGTTGTTTATGTAAGGTGGTAATACTTTTATGTCATCTAAGATCATCTTGATATAAAATTAATGCCTGCACGTCAATCACTAAACTTGTCCAAAATCAAAATTTCCCATGTTTTTCAAAGTTTGTACGTAATATAAATGGGTCACTAAAAGAGTTGGGGCTGGATTGAATTGGGGCCTACAAAGGTAAGAGCCTCCCAAGGAATTGTTTTCATTTTTGAAACATAGGCGGTTGAATGGACCAAGTCTAGCATAAAAACATTTGGCCCAAACAACCCTTAAACCTATTGTTCGATTGCTTGGGTTGTACTGGCTAGTTGGGCCATAAGCAGACCTTATAATTTTACATTTTTAATAACTGATTTTTAGGAAAAAAATTATGAAATTATTATATGTTTACCTACAAGCTTAAATAAATTACTTTTTTTTAATGGAAATCAGTGATACATTAGTCATTAATAATTCTACGTAAATAATATTCATTATGTATTTGTGCATGATAATACAAAGATATATTACTCCTCAAGTGAAGGATTCAAAGCCCAAGGCAGCTTCTCGACAGAGGCCAAGCTTGGGATTTGTTTTCAAAATCTTTGGTAGTTGGCCCTTCATTGTTTGGAAATTATTATTATTATTATTATTTAACCAATATCGATAAAAATTAACTTCAGAATAAGAACTATATTTAAGATATATTGAAAGTAAATTCAAACATTTGAAAGTATAAGGACTAAAATGAAATGAGATCTAAAGTACATGGACCGAAATGGTATTTTAACCTACTTTTTATAAAGTTTCTATAGTAATTTGTTAAGCATGTAAACTTTCTGTGCTTGCACACTTATTGGTTTACAGATGCTTCCATTTTGTTTTCTTTTCAATTCGCATGGGCAGATCAAGTTTTGCTCCTTACACTACTGTGGCTTTGGCGTTGATTGTATGAGATGCTTTGAGTATAAAATTGATTTGATAAAGTGCTCCCTTATGTAATCTAGTTGCATTTAAAGCTTTTCTCCTTTTCCTTTTTCTTTTCTGGTAATTTACTTTTTGGCTACATCATGAAACTACAGAATAATTGGCTAAAAGTGATGGAAGATGAACATTTTTTACCATTAAAGAATTTGGAAGTTGATCACTAATTCCCTTTTTAACACAGCTCAAGAGGGAACTGATGCTTTTGTCTGTTGGCATTGGAACTGCATGCAGTGGGTATTGCCTGATAGTATTTTCGTTCCAGGTATATTCCAATTGAAGAAGAAAGGGCATTATCTTGTGTGCTACAGTAATTTTTTTGGTTGATTTACAGTTCTTTTAGTACAAAGTAGAAGGAAGGATGCCATTATAGACTGGAGTCATTATATTATAAAGAAGTTGCTATGTTACTTAGACTCCAGTATCTATTTCATTAACATTTATTGGCCTGGATCATCTCATTTTCTTCAAGTGACACCTCACTTTTTCTTGACATGACTCATTAGTTGAGAGGAGCTTGCTTGCTGATGAAGGAATTTATTTGTTTTTTCTGTTCAGGCTGCTATTAGTTATGCAGTAGGAGCCCTTTCGAGGTTAGTTGATATGGTTTTAATGTTGCTGTTATTTTGTAACTTCATTTTGGCATGCTGTGGTTCACTACCAAGAGTTAAGTTTTCATTCCAAGATTTGAAGTTTTCAAATAAGATCTTGGTCAGGATGTAAGAATAAATATTAACTAACAAGACTCTTCCAAAACAATTTCTTGGAGAAGTTTGTAAGAATCAAAGTGACCTCTAGTCAAATCAGTTTTTGCCTCCTACGGAGGAAAAAAAAAAAAAATATATCCGTTCTTAAATTGTGATTAGATTTCTATTGCACAATTATCAGAGAAACCTTGTTATTTTGTTGTAATTGTGCAATAACATCTGGGATTATCTCTAATGCAGCTGCTTATACCTCCAGTTATTATATCGACATGCTGACAAACTATCTAAAGACATGGTTCCCGATATCTTCACGCAGAAAAAGACAAAAAAGTATGGATAAATCCCATAGTCGATCTATTTGTTTATTGAGTATAACTTGTTTGTCACAATCAACATTCATTCTTTGAGCCAGAATTGGAATAAGAAGTGAAGATATCCAGAACGTGTTTGAAAAATCAGTGAGGGGAAGTAGCATTGCCCTGTCATCTCCTAGGCTTTTGATTCCTGCTGCAATATATGCAATATGGATCCTCTCTCATAAATATCTTGCCAACGACTTCTTCGACTTCCAGGTAACAAATGACTGTGTGGACCTTTTTGTTTGATATAATGTTTTAACCAATTGAACTAGTCTCGAGTTAAAAAGACTATATTTATTTTAAATGCATGTAGCCCCAAAAATAACACTCGGATGTTTTCATGTGATTCTCTTCCTGTGTTTAGCTCACGCCAGCCATGGTTGGGATGTTTGTCTATAAAGCAGCTGCACTTGTTCAAGTTTACAGGGACAATGAAAACCTGAGATTGGACTTTCCAGAAAATGATGGGGGCTCGGCATGA CAAAAATGCTTCCCGGAAAGATATTTTGGTTCCCACGATTGTGAAGCTCGGATAAGCCATGGAGACTCTTTCTATGGTTACATGCTTCACCTGCAAGCAGACTCCACCGCCAACCAGATTCCTATCTCGCACAGCTACAGCATTATCTCATTTGCAGAAATCAAAGCTCCCTATTCCATTATCGCGAACAAGAATTCGGGCAGTAAGTGAAATTGCAGAAGAGGATGTTCTACAAGCATTCTTTGAGGAACGAAAACTAAATGCAGATTTTATATCAAAAACTTCTGATATGCTTTGGCAGAGGGAGGTCATGAAATTCGAAGATGTGACTGACGACAGATTTACTGATACTTCCCAAGAAGTACTGGTTGATGAAAACGATGATGGTGGTGGGTTTTTGAAATTGTCCGCCACTCAAGCATGGGTCTCAGGTGGTAACTCTGCACCAATCAATAAAAAAGTTGGTGATAAGATACTTCCAGATGACCGTGAAAGAAGGAAGAAACTAAATTTTCTCAAATATGAAGCTCTCAAGAGGGAACTGATGCTTTTGTCTGTTGGCATTGGAACTGCATGCAGTGGGTATTGCCTGATAGTATTTTCGTTCCAGGCTGCTATTAGTTATGCAGTAGGAGCCCTTTCGAGCTGCTTATACCTCCAGTTATTATATCGACATGCTGACAAACTATCTAAAGACATGGTTCCCGATATCTTCACGCAGAAAAAGACAAAAAAAATTGGAATAAGAAGTGAAGATATCCAGAACGTGTTTGAAAAATCAGTGAGGGGAAGTAGCATTGCCCTGTCATCTCCTAGGCTTTTGATTCCTGCTGCAATATATGCAATATGGATCCTCTCTCATAAATATCTTGCCAACGACTTCTTCGACTTCCAGCTCACGCCAGCCATGGTTGGGATGTTTGTCTATAAAGCAGCTGCACTTGTTCAAGTTTACAGGGACAATGAAAACCTGAGATTGGACTTTCCAGAAAATGATGGGGGCTCGGCATGA ATGGAGACTCTTTCTATGGTTACATGCTTCACCTGCAAGCAGACTCCACCGCCAACCAGATTCCTATCTCGCACAGCTACAGCATTATCTCATTTGCAGAAATCAAAGCTCCCTATTCCATTATCGCGAACAAGAATTCGGGCAGTAAGTGAAATTGCAGAAGAGGATGTTCTACAAGCATTCTTTGAGGAACGAAAACTAAATGCAGATTTTATATCAAAAACTTCTGATATGCTTTGGCAGAGGGAGGTCATGAAATTCGAAGATGTGACTGACGACAGATTTACTGATACTTCCCAAGAAGTACTGGTTGATGAAAACGATGATGGTGGTGGGTTTTTGAAATTGTCCGCCACTCAAGCATGGGTCTCAGGTGGTAACTCTGCACCAATCAATAAAAAAGTTGGTGATAAGATACTTCCAGATGACCGTGAAAGAAGGAAGAAACTAAATTTTCTCAAATATGAAGCTCTCAAGAGGGAACTGATGCTTTTGTCTGTTGGCATTGGAACTGCATGCAGTGGGTATTGCCTGATAGTATTTTCGTTCCAGGCTGCTATTAGTTATGCAGTAGGAGCCCTTTCGAGCTGCTTATACCTCCAGTTATTATATCGACATGCTGACAAACTATCTAAAGACATGGTTCCCGATATCTTCACGCAGAAAAAGACAAAAAAAATTGGAATAAGAAGTGAAGATATCCAGAACGTGTTTGAAAAATCAGTGAGGGGAAGTAGCATTGCCCTGTCATCTCCTAGGCTTTTGATTCCTGCTGCAATATATGCAATATGGATCCTCTCTCATAAATATCTTGCCAACGACTTCTTCGACTTCCAGCTCACGCCAGCCATGGTTGGGATGTTTGTCTATAAAGCAGCTGCACTTGTTCAAGTTTACAGGGACAATGAAAACCTGAGATTGGACTTTCCAGAAAATGATGGGGGCTCGGCATGA METLSMVTCFTCKQTPPPTRFLSRTATALSHLQKSKLPIPLSRTRIRAVSEIAEEDVLQAFFEERKLNADFISKTSDMLWQREVMKFEDVTDDRFTDTSQEVLVDENDDGGGFLKLSATQAWVSGGNSAPINKKVGDKILPDDRERRKKLNFLKYEALKRELMLLSVGIGTACSGYCLIVFSFQAAISYAVGALSSCLYLQLLYRHADKLSKDMVPDIFTQKKTKKIGIRSEDIQNVFEKSVRGSSIALSSPRLLIPAAIYAIWILSHKYLANDFFDFQLTPAMVGMFVYKAAALVQVYRDNENLRLDFPENDGGSA
BLAST of CmaCh13G003560.1 vs. TrEMBL
Match: A0A0A0LVU8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G166810 PE=4 SV=1) HSP 1 Score: 513.5 bits (1321), Expect = 1.9e-142 Identity = 268/316 (84.81%), Postives = 286/316 (90.51%), Query Frame = 1
BLAST of CmaCh13G003560.1 vs. TrEMBL
Match: W9RQ38_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016308 PE=4 SV=1) HSP 1 Score: 380.2 bits (975), Expect = 2.5e-102 Identity = 201/314 (64.01%), Postives = 237/314 (75.48%), Query Frame = 1
BLAST of CmaCh13G003560.1 vs. TrEMBL
Match: A0A061GU42_THECC (NF-kappa-B inhibitor-like protein 2 isoform 1 OS=Theobroma cacao GN=TCM_041354 PE=4 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 6.2e-101 Identity = 202/318 (63.52%), Postives = 237/318 (74.53%), Query Frame = 1
BLAST of CmaCh13G003560.1 vs. TrEMBL
Match: V4SK24_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10028837mg PE=4 SV=1) HSP 1 Score: 371.7 bits (953), Expect = 8.9e-100 Identity = 200/324 (61.73%), Postives = 238/324 (73.46%), Query Frame = 1
BLAST of CmaCh13G003560.1 vs. TrEMBL
Match: A0A0D2TLU8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G084000 PE=4 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 9.8e-99 Identity = 197/314 (62.74%), Postives = 236/314 (75.16%), Query Frame = 1
BLAST of CmaCh13G003560.1 vs. TAIR10
Match: AT5G22340.2 (AT5G22340.2 unknown protein) HSP 1 Score: 275.8 bits (704), Expect = 3.4e-74 Identity = 145/250 (58.00%), Postives = 182/250 (72.80%), Query Frame = 1
BLAST of CmaCh13G003560.1 vs. NCBI nr
Match: gi|449443462|ref|XP_004139496.1| (PREDICTED: uncharacterized protein LOC101208386 [Cucumis sativus]) HSP 1 Score: 513.5 bits (1321), Expect = 2.7e-142 Identity = 268/316 (84.81%), Postives = 286/316 (90.51%), Query Frame = 1
BLAST of CmaCh13G003560.1 vs. NCBI nr
Match: gi|659127348|ref|XP_008463655.1| (PREDICTED: uncharacterized protein LOC103501748 isoform X2 [Cucumis melo]) HSP 1 Score: 511.9 bits (1317), Expect = 7.9e-142 Identity = 266/317 (83.91%), Postives = 286/317 (90.22%), Query Frame = 1
BLAST of CmaCh13G003560.1 vs. NCBI nr
Match: gi|659127344|ref|XP_008463653.1| (PREDICTED: uncharacterized protein LOC103501748 isoform X1 [Cucumis melo]) HSP 1 Score: 505.4 bits (1300), Expect = 7.4e-140 Identity = 266/323 (82.35%), Postives = 286/323 (88.54%), Query Frame = 1
BLAST of CmaCh13G003560.1 vs. NCBI nr
Match: gi|703120072|ref|XP_010102018.1| (hypothetical protein L484_016308 [Morus notabilis]) HSP 1 Score: 380.2 bits (975), Expect = 3.6e-102 Identity = 201/314 (64.01%), Postives = 237/314 (75.48%), Query Frame = 1
BLAST of CmaCh13G003560.1 vs. NCBI nr
Match: gi|590586624|ref|XP_007015756.1| (NF-kappa-B inhibitor-like protein 2 isoform 1 [Theobroma cacao]) HSP 1 Score: 375.6 bits (963), Expect = 8.8e-101 Identity = 202/318 (63.52%), Postives = 237/318 (74.53%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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