CmaCh13G001070.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G001070.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr13 : 742592 .. 745946 (-)
Sequence length	1911

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATGAATCGTTCAACGGCTATGAGAAATCATTCAGAGGACGAGGAAGAGGCTGAAAAGAGTAATGGTGTTAGGGGAAGAAGCAGGTAATGACTTGTGATAAACTGATTTTCAGATTTAGTGCGATGCTTTATTTTTGTACCGTTTGAGATATGATGGAGAAGCATTTTTGTGAGATCCCGCGTCGGTTGGGGAGGAGAACGAAATCTTCTTTATAAGGGTGTGGAAACCTCTCTCTAGCAGATGCGTTTTAAAACCTTGAGGGGAAGCCTAGAAGGAATTGCCCAAAGAAGATAATATCTGCTTGCGGAGTTGTTACGAATGGTATTAGAGCCAAACATCAAGCGGTGTGCCAGCAAGGATGCTGAGCTTCGAAGGGGGTAGACATCAAGTGGTGTGCCTGCAAGGACGTTGGGCCTCGGAAGAGGGGGGTGGGGGGTGGATTGTGAGATCCCACATCAATTGGCGAGGAGAACGAAACATTTTTTATAAGGGTGTGGAAACCCCTCCCTAGAAACATATTTTAAAACCTTGAGGGGAAGCCCAAATAGGACATATCTACTAGCGTTGGGCTTGGGCTGTACAAATGGTATCAGAACCAGACACTGGGCGGTATGCCAGTGAGGACGCTGAGCTTCGAAGGGGACAAACATCGGGCGTTGTGTCAGTGAGGATGTTGGACCCCGACATCGATTGGAGAGGGAACGAGTGCCAGCGAGGATAGTTTCTACCTACTTAGTTGCATGCTAAAAGGGTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACATTTTTTATAAGGGTGTGGAAAGCTCTTCCTAGTAGACACGTTTTAAAAACCTTGAGGGGAATCCTGAAAGGGAAAGCCTAAAAATGACAATATCTGCTAGCGGTGTGCTTGGGCAGTTACAATTTTTGTACCTTCAAATTACGACAAAGTTACATTCTTACTTATTTTATTGTCACTTCTAAATTTCAGTGATGCATATATTTATTTGTACAAGGGTAATAAATATGTTTTTTTTTTTCTTAATAGAAGTATGTGTGGTTACTATGTTGCTTTTCAAAATCTTCTAGTTGTACTAATGCTTTTGTCCTATTTTCTTTTTAGTGATGGACACAAGTCAAGGAGTATATCTCGATCACCTCAACAGCTACGAGACTCCTTTTCACAAGGAAGATTATCTATTAGCCCATGTCGTAGGGACCATCGTGGTTCATCCTCTCCTCGACATAGATCATCTGATTCAAGAAGGTCTAGATCTACTTCACATCGTAAATCTCTTTCTCCAGTAGTGCATCAGTTGCAGTCTCCTTCTCAACATAGTTCACCATCTCCTCGTTGTAAATCACCATATCAACTATCTTCGTCTGGGCAAAGTCGATCATCGTCACCTGCACAACGAAGGTCACCATCACTTGATAAGCATAGTAGATCACCATCACCCACTGAGCATCACAGGTCACTATCACCAATTAGACACAATCGTTTGCCTTCACCTGCTCAACATCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTAAATGGAGTCGTAGATCACCATCTCCTAAATGGCGTCGTAGATCACCATCACCAAAATGGAGTCATAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCACCAAAATGGAGTCGTTGGTCACCATCACCAAGACGACGTCGTAGGTCTCCATCACCAAGACGACGTCGTAGGTCTCCATCACCAAGACGACGTCGTAGGTCTCCATCACCAAGACGGCGTCACAGGTCTCCATCACCTGTACGATGCCGAAGGTCACCAACTCCTATACGACGTCGAAGGTCACCAACTCCGGTACGACGTCGAAGGTCACCAACTCCGGTACGACGTCGAAGGTCACCATCTCCAATACGAAGTCAAAGGTCAACATCGTCGCCGCGTCATTACAGGTCACCATCTCCACACCGTCGGAAATCACCTTCCCTTGTACGTCGTCATAGATCGCCATCTCCAGCACACTACTGGAGATCGCCCTCACCTATTAAACGCCACCCATCTCGTTCTCCAAGGCAATGCTCTATGTTACCTTCATCCTCACCAATACAGAAATTGGATAGGCCATCACCACATGATCATCACATAACACCCTCTCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCGAGCCTTTCTCAACATAGATCCATTTCACCATATGGTCTGAGTTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGGTACTTCTCTTTTCCTGTATTAAGCTTGCATCCTGTGTGATGGTTTCTACCTACTTAGCTGCATGTTATTAATCTGTTGATCAAAACTGCTAGATGGTAAGAGTACTAGCCATCTATAGAACAGTAAATCTGCAGGCTGCTGTTAAAACTTTTTAGTTCTTGAATTTGTGAATTAATTTAACTTCATCTTTAGTGTTGAGATCCTTAGAAACTTTTACTATTTGTTTGGCTCATATGATTGTGATTTGCTGATGGGTTTTATTCATCTGTTTATGCACTTGCCCTGATTCTTTGGAATTTAGAAAGAAATATCAGGAACTAAGGATCCTTGTAGAAGGGTATTCTGTTATTTTAATCGTTTATACGTGAAAATACAGGCCTGTTACTCTTGTTTTTGTTTTATATTTATTTTGTAGTGATGAAAAGAGCTACTCACGCCGAGGTAAAGCCAAGGAAGCTGAGGCTCGGATTGTCGAAAATAATAATAACCGTGGCGAGGTCTCAGATTCTGATATGGAGGAAGGCTATAAGCGTAAAACCAGAAGTAAGGGTAGGAAAAGACACAGAAGATCAGACAGGAGTGACACTTCTTCGGAGAGAAGACACAGAAGATCAGACAGGCGCGACACTTCTTCGGAGTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCAGGAGAAGGAAGGAGGAGGAGAGGAGGTGGCGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATGGACGTAAAAAGGAAAAGCGGCGTGCTGAGAAGACGAACGCTAAGACTCTCAGTGATGATTGCTCGGACGATGGTCGAGCTGTAAGGGAAGAGTGTCGTCCGAGTGATGGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTCGAGTTGAGGAATAAGGCACTGGAAGCATTCATTGCAAGGAAAGGGAGAAGGCATAATAAACCTTCAGAATAG

mRNA sequence

ATGTCAATGAATCGTTCAACGGCTATGAGAAATCATTCAGAGGACGAGGAAGAGGCTGAAAAGAGTAATGGTGTTAGGGGAAGAAGCAGTGATGGACACAAGTCAAGGAGTATATCTCGATCACCTCAACAGCTACGAGACTCCTTTTCACAAGGAAGATTATCTATTAGCCCATGTCGTAGGGACCATCGTGGTTCATCCTCTCCTCGACATAGATCATCTGATTCAAGAAGGTCTAGATCTACTTCACATCGTAAATCTCTTTCTCCAGTAGTGCATCAGTTGCAGTCTCCTTCTCAACATAGTTCACCATCTCCTCGTTGTAAATCACCATATCAACTATCTTCGTCTGGGCAAAGTCGATCATCGTCACCTGCACAACGAAGGTCACCATCACTTGATAAGCATAGTAGATCACCATCACCCACTGAGCATCACAGGTCACTATCACCAATTAGACACAATCGTTTGCCTTCACCTGCTCAACATCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTAAATGGAGTCGTAGATCACCATCTCCTAAATGGCGTCGTAGATCACCATCACCAAAATGGAGTCATAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCACCAAAATGGAGTCGTTGGTCACCATCACCAAGACGACGTCGTAGGTCTCCATCACCAAGACGACGTCGTAGGTCTCCATCACCAAGACGACGTCGTAGGTCTCCATCACCAAGACGGCGTCACAGGTCTCCATCACCTGTACGATGCCGAAGGTCACCAACTCCTATACGACGTCGAAGGTCACCAACTCCGGTACGACGTCGAAGGTCACCAACTCCGGTACGACGTCGAAGGTCACCATCTCCAATACGAAGTCAAAGGTCAACATCGTCGCCGCGTCATTACAGGTCACCATCTCCACACCGTCGGAAATCACCTTCCCTTGTACGTCGTCATAGATCGCCATCTCCAGCACACTACTGGAGATCGCCCTCACCTATTAAACGCCACCCATCTCGTTCTCCAAGGCAATGCTCTATGTTACCTTCATCCTCACCAATACAGAAATTGGATAGGCCATCACCACATGATCATCACATAACACCCTCTCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCGAGCCTTTCTCAACATAGATCCATTTCACCATATGGTCTGAGTTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGTGATGAAAAGAGCTACTCACGCCGAGGTAAAGCCAAGGAAGCTGAGGCTCGGATTGTCGAAAATAATAATAACCGTGGCGAGGTCTCAGATTCTGATATGGAGGAAGGCTATAAGCGTAAAACCAGAAGTAAGGGTAGGAAAAGACACAGAAGATCAGACAGGAGTGACACTTCTTCGGAGAGAAGACACAGAAGATCAGACAGGCGCGACACTTCTTCGGAGTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCAGGAGAAGGAAGGAGGAGGAGAGGAGGTGGCGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATGGACGTAAAAAGGAAAAGCGGCGTGCTGAGAAGACGAACGCTAAGACTCTCAGTGATGATTGCTCGGACGATGGTCGAGCTGTAAGGGAAGAGTGTCGTCCGAGTGATGGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTCGAGTTGAGGAATAAGGCACTGGAAGCATTCATTGCAAGGAAAGGGAGAAGGCATAATAAACCTTCAGAATAG

Coding sequence (CDS)

ATGTCAATGAATCGTTCAACGGCTATGAGAAATCATTCAGAGGACGAGGAAGAGGCTGAAAAGAGTAATGGTGTTAGGGGAAGAAGCAGTGATGGACACAAGTCAAGGAGTATATCTCGATCACCTCAACAGCTACGAGACTCCTTTTCACAAGGAAGATTATCTATTAGCCCATGTCGTAGGGACCATCGTGGTTCATCCTCTCCTCGACATAGATCATCTGATTCAAGAAGGTCTAGATCTACTTCACATCGTAAATCTCTTTCTCCAGTAGTGCATCAGTTGCAGTCTCCTTCTCAACATAGTTCACCATCTCCTCGTTGTAAATCACCATATCAACTATCTTCGTCTGGGCAAAGTCGATCATCGTCACCTGCACAACGAAGGTCACCATCACTTGATAAGCATAGTAGATCACCATCACCCACTGAGCATCACAGGTCACTATCACCAATTAGACACAATCGTTTGCCTTCACCTGCTCAACATCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTAAATGGAGTCGTAGATCACCATCTCCTAAATGGCGTCGTAGATCACCATCACCAAAATGGAGTCATAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCTCCTGAATGGCGTCGTAGATCACCATCACCAAAATGGAGTCGTTGGTCACCATCACCAAGACGACGTCGTAGGTCTCCATCACCAAGACGACGTCGTAGGTCTCCATCACCAAGACGACGTCGTAGGTCTCCATCACCAAGACGGCGTCACAGGTCTCCATCACCTGTACGATGCCGAAGGTCACCAACTCCTATACGACGTCGAAGGTCACCAACTCCGGTACGACGTCGAAGGTCACCAACTCCGGTACGACGTCGAAGGTCACCATCTCCAATACGAAGTCAAAGGTCAACATCGTCGCCGCGTCATTACAGGTCACCATCTCCACACCGTCGGAAATCACCTTCCCTTGTACGTCGTCATAGATCGCCATCTCCAGCACACTACTGGAGATCGCCCTCACCTATTAAACGCCACCCATCTCGTTCTCCAAGGCAATGCTCTATGTTACCTTCATCCTCACCAATACAGAAATTGGATAGGCCATCACCACATGATCATCACATAACACCCTCTCCTCTAGAACGTAGATCTCCATCATCTCCAGCACGTCTCAAGAGATCGAGCCTTTCTCAACATAGATCCATTTCACCATATGGTCTGAGTTATTCATCAAAGGAGCGGGGAAACCGATCGCCTGTCAAAGTAAAATCTCCCAGGGTCAGAACCAGTGATGAAAAGAGCTACTCACGCCGAGGTAAAGCCAAGGAAGCTGAGGCTCGGATTGTCGAAAATAATAATAACCGTGGCGAGGTCTCAGATTCTGATATGGAGGAAGGCTATAAGCGTAAAACCAGAAGTAAGGGTAGGAAAAGACACAGAAGATCAGACAGGAGTGACACTTCTTCGGAGAGAAGACACAGAAGATCAGACAGGCGCGACACTTCTTCGGAGTCGGAAGACAGCTATGATAGTGAATTGGAGAGGAAGGAGGCCAGGAGAAGGAAGGAGGAGGAGAGGAGGTGGCGGAAGGAGAAGAAGCGACAAAGACGTGAAGAGCATGGACGTAAAAAGGAAAAGCGGCGTGCTGAGAAGACGAACGCTAAGACTCTCAGTGATGATTGCTCGGACGATGGTCGAGCTGTAAGGGAAGAGTGTCGTCCGAGTGATGGTGCGTATGAGGCCGAGCAGAGAAGGTTAGAGGTCGAGTTGAGGAATAAGGCACTGGAAGCATTCATTGCAAGGAAAGGGAGAAGGCATAATAAACCTTCAGAATAG

Protein sequence

MSMNRSTAMRNHSEDEEEAEKSNGVRGRSSDGHKSRSISRSPQQLRDSFSQGRLSISPCRRDHRGSSSPRHRSSDSRRSRSTSHRKSLSPVVHQLQSPSQHSSPSPRCKSPYQLSSSGQSRSSSPAQRRSPSLDKHSRSPSPTEHHRSLSPIRHNRLPSPAQHRRSPSPEWRRRSPSPEWRRRSPSPKWSRRSPSPKWRRRSPSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRSPSPKWSRWSPSPRRRRRSPSPRRRRRSPSPRRRRRSPSPRRRHRSPSPVRCRRSPTPIRRRRSPTPVRRRRSPTPVRRRRSPSPIRSQRSTSSPRHYRSPSPHRRKSPSLVRRHRSPSPAHYWRSPSPIKRHPSRSPRQCSMLPSSSPIQKLDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQHRSISPYGLSYSSKERGNRSPVKVKSPRVRTSDEKSYSRRGKAKEAEARIVENNNNRGEVSDSDMEEGYKRKTRSKGRKRHRRSDRSDTSSERRHRRSDRRDTSSESEDSYDSELERKEARRRKEEERRWRKEKKRQRREEHGRKKEKRRAEKTNAKTLSDDCSDDGRAVREECRPSDGAYEAEQRRLEVELRNKALEAFIARKGRRHNKPSE

Homology

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BLAST of CmaCh13G001070.1 vs. Swiss-Prot
Match: SRRM1_CHICK (Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.3e-06
Identity = 175/497 (35.21%), Postives = 232/497 (46.68%), Query Frame = 1


Query: 39  SRSPQQLRDSFSQGRLSISPCRRDHRGSSSPRHRSSDSRRSRSTSH--RKSLSPVVHQLQ 98
           S +PQQ   +  + R S+SP R     +S+P+H+S++ R S S +   RK+      + +
Sbjct: 411 SPTPQQSNRA-RKSRGSVSPGR-----ASAPKHKSTEKRESPSPAPKPRKAELSESEEDK 470

Query: 99  SPSQHSSPSPRCKSPY-----QLSSSGQSRSSSPAQRRSPSLDKHSRSPSPTEHHRSLSP 158
                ++ S + +  Y     Q SS   S SSS  +R   S  K+        H  S SP
Sbjct: 471 GGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEEERPKRSNVKNGEVGRRRRHSHSRSP 530

Query: 159 IRHNRLPSPAQHRRSPSPEWRRRSPSPE--WRRRSPSPKWSRRSPSPKWRRRSPS-PKWS 218
                 PSP + ++ PSP  RRRSPSP    RRRSPSP      P P  RRRSPS P+  
Sbjct: 531 S-----PSPRKRQKEPSPRRRRRSPSPPPARRRRSPSP------PPPPRRRRSPSLPR-- 590

Query: 219 HRSPSPEWRRRSPSPEWRRRSPSPEWRRRSPSPKWSRWSPSPRRRRRSPSPRRRRRSPSP 278
            RSPSP  RRRSPSP  RR SP P  RR SPSP   R + SP      P P +RR SPSP
Sbjct: 591 RRSPSPPPRRRSPSP--RRYSP-PIQRRYSPSPPPKRRTASP------PPPPKRRASPSP 650

Query: 279 RRRRR-SPSPRRRHRSPSPVRCRRSPTPIRRRRSPTPV----RRRRSPTPVRRRRSPSPI 338
           + +RR S SP  + RS SP   RRSP+   + R  +P     R  RSP P  +R SPSP 
Sbjct: 651 QSKRRVSHSPPPKQRS-SPAAKRRSPSISSKHRKGSPPSRSNRETRSP-PQNKRDSPSPR 710

Query: 339 RSQRSTSSPRHYRSPSPHRRKSPSLVRRHRSPSPA-----HYWRSPSPIKRHPSR-SPRQ 398
                TSS     SP P RR + +  +R +SPSP+        R+P P K   S  SPR 
Sbjct: 711 PRASHTSS-----SPPPLRRGASASPQRRQSPSPSTRPIRRVSRTPEPKKTKASTPSPRS 770

Query: 399 CSMLPSSSPIQKLDRPSPHDHHITPSPLERRSPS---SPARLKRSSLSQHRSISPYGLSY 458
              + SS        P+P  H   PSP   RSPS   SPA+  +S        SP     
Sbjct: 771 ARRVSSSRSASGSPEPAPKKHQGPPSPARSRSPSANWSPAKKAKSPTQ-----SPSPARN 830

Query: 459 SSKERGNRSPVKVKSPRVRTSDEKSYSRRGKAKEAEARIVENNNNRGEVSDSDMEEGYKR 512
           S +E G +   K K  + +   +K + +  K K+ +A +            +  +E  + 
Sbjct: 831 SDQEGGGKKKKKKKDKKHK--KDKKHKKHKKHKKEKAAVAAAPAAVAAADTTSAQEEQEA 865

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BLAST of CmaCh13G001070.1 vs. TrEMBL
Match: A0A0A0LVE0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G524700 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 1.7e-73
Identity = 278/545 (51.01%), Postives = 313/545 (57.43%), Query Frame = 1


Query: 5   RSTAMRNHSEDEEEAEKSNGVRGRSSDGHKSRSISRSPQQLRDSFSQGRLSISPCRRDHR 64
           RS AMRN+ EDEE AEK NGVRGRSSD HKSRS+SRSPQ+ R SFS+GR S SP RRD R
Sbjct: 183 RSRAMRNYPEDEEVAEKRNGVRGRSSDRHKSRSMSRSPQRRRRSFSRGRSSSSPRRRDRR 242

Query: 65  GSSSPRHRSSD-SRRSRSTSHRKSLSPVVHQLQSPSQHSSPSPRCKSPYQLSSSGQSRSS 124
            S SPRHRSS   RRS STSHRKS SP V QL+SPSQHSSPSP  KSPY+ SS  Q  S 
Sbjct: 243 DSFSPRHRSSHLMRRSGSTSHRKSRSPEVRQLRSPSQHSSPSPGRKSPYRSSSPMQRLSL 302

Query: 125 SPAQRRSPSLDKHSRSPSPTEHHRSLSPIRHNRLPSPAQHRRSPSPEWRRRSPSPEWRRR 184
           SPA RRSP+LDKH+RSPSPT H RSLSPIR                           RRR
Sbjct: 303 SPAHRRSPALDKHNRSPSPTRHRRSLSPIR---------------------------RRR 362

Query: 185 SPSPKWSRRSPSPKWRRRSPSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRSPSPKW 244
           SPSP   RRSPSPK                  WRRRSPSPEWRRRSPSP  RRR      
Sbjct: 363 SPSPVRRRRSPSPK------------------WRRRSPSPEWRRRSPSPGRRRR------ 422

Query: 245 SRWSPSPRRRRRSPSPRRRRRSPSPRRRRRSPSPRRRHRSPSPVRCRRSPTPIRRRRSPT 304
              SPSP RR RSPSP RRRRSPSP RRRRSPSP RRHRSPSP R R+SP+ +RRRRSP+
Sbjct: 423 ---SPSPIRRWRSPSPIRRRRSPSPIRRRRSPSPPRRHRSPSPYR-RKSPSFVRRRRSPS 482

Query: 305 PVRRRRSPTPVRRRRSPSPIRSQRSTSSPRHYRSPSPHRRKSPSLVRRHRSPSPAHYWRS 364
           P  RRRSP+P   RRSPSPI+S +S S  R    P      SPS  R+    SP  + R+
Sbjct: 483 PSHRRRSPSPAHYRRSPSPIKSHKSRSPVRRPMLP------SPSPTRKLDRSSPLDHRRT 542

Query: 365 PSPIKRHPSRSPRQCSMLPSSSPIQKLDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQ 424
           PSP++R   RSP   + L  S P+  L R SP                     KRSS SQ
Sbjct: 543 PSPLER---RSP--STSLSKSPPL--LQRSSPG------------------LRKRSSPSQ 602

Query: 425 HRSISPYGLSYSSKERGNRSPVKVKSPR----------------VRTSDEKSY-SRRGKA 484
           H   S YG SYSS+E+ N SPVKVKS +                V+TS      SR  ++
Sbjct: 603 HGRRSTYGRSYSSEEQENPSPVKVKSAQHRRRSLSQSPMDRSRNVQTSPASQLPSRSLRS 639

Query: 485 KEAEARIVENNNNRGEVSDSDMEEGYKRKTRSKGRKRHRRSDRSDTSSERRHRRSDRRDT 532
            E +A+   N+NNR   S S +E+       S         DR   SS +   +  RRDT
Sbjct: 663 PERDAKERNNSNNRARASSSSLEKS-PAPANSPPVTSSANDDRR-LSSPQSRAKQHRRDT 639

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BLAST of CmaCh13G001070.1 vs. TrEMBL
Match: E3L6H4_PUCGT (Uncharacterized protein OS=Puccinia graminis f. sp. tritici (strain CRL 75-36-700-3 / race SCCL) GN=PGTG_17879 PE=4 SV=2)

HSP 1 Score: 161.0 bits (406), Expect = 4.8e-36
Identity = 191/362 (52.76%), Postives = 211/362 (58.29%), Query Frame = 1


Query: 17  EEAEKSNGVRGRSSDGHKSRSISRSPQQLRDSFSQGRLSISPCRRDHRGSSSPRHRSSDS 76
           +EAE S+     SSD   S S + S     DS S  R S+S  RR  R    PR  S   
Sbjct: 627 DEAEASSDDDDSSSD-ISSISSTDSSDSDSDSSSSDRSSVSRDRRGARNGRRPRRDSPSP 686

Query: 77  --RRSRSTSHRKSLSPVVHQLQSPSQHSSPSPRCKSPYQLSSSGQSRSSSPAQRR---SP 136
             RR  S  HR S SPV  +L S     SP  R +S   +       S SP +RR   SP
Sbjct: 687 VYRRGASGRHRDSRSPV-RRLDS----RSPVRRRESRSPVRGRD---SRSPVRRRDSRSP 746

Query: 137 SLDKHSR-SPSPTEHHRSLSPIRHNRLPSPAQHRRSPSPEWRRRSPSPEWRRRSPSPKWS 196
              + SR S SP    RS SP+R    PSP + R SPSP  RR SPSP  RR SPS    
Sbjct: 747 VRRRESRDSRSPVRRRRSPSPVRRRGSPSPVRRRGSPSPVRRRGSPSPVRRRGSPSQVRH 806

Query: 197 RRSPSPKWRRRSPSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRSPSPKWSRWSPSP 256
           R SPSP  RR SPSP    RSPSP  RR SP P  RR SPSP  RR SPSP   R SPSP
Sbjct: 807 RDSPSPVRRRGSPSPVRRRRSPSPARRRGSPPPR-RRGSPSPVRRRGSPSPVRHRDSPSP 866

Query: 257 RRRRRSPSPRRRRRSPSPRRRRRSPSPRRRHRSPSPVRCRRSPTPIRRRRSPTPVRRRRS 316
            RRR SPSP RRR SPSP RRR SPSP RR  SPSPVR R SP+P+RRRRSP+PVRRR S
Sbjct: 867 VRRRDSPSPDRRRDSPSPVRRRGSPSPVRRRGSPSPVRRRGSPSPLRRRRSPSPVRRRGS 926

Query: 317 PTPVRRRRSPSPIRSQRSTSSPRHYRSPSPHRRK---SPSLVRRHRSPSPAHYWRSPSPI 370
           P+PVRRR SPSP+R + S S  R   SPSP RR+   SPS VRR  SPSP     SPSP+
Sbjct: 927 PSPVRRRDSPSPVRRRDSPSPVRRRDSPSPVRRRDSPSPSPVRRRGSPSPVRRRGSPSPV 978

[Close]

BLAST of CmaCh13G001070.1 vs. TrEMBL
Match: A0A067FKH1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003124mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.8e-28
Identity = 254/679 (37.41%), Postives = 335/679 (49.34%), Query Frame = 1


Query: 9   MRNHSEDEEEAEKSNG-VRGRSSDGHKSRSISRSPQQLRDSFSQGRLSISPCRRDH-RGS 68
           + + S       KSN   R  S D  KSRS+SRSP+  R S S  R SI+P RR   R S
Sbjct: 221 LSHRSSPSRSISKSNSNSRSYSDDRRKSRSVSRSPKVRRRSISPRRQSITPRRRHSPRRS 280

Query: 69  SSPRHRSSD-SRRSRSTSHRKSLSPVVHQLQSPSQHSSPSPRCKSPYQLSSSGQSRSSSP 128
            SP  R S   RRSRS S R+S SPV  +L+SP +  SP P                   
Sbjct: 281 RSPSRRLSYFRRRSRSHSPRRSPSPVRRRLRSPFRGKSPMP------------------- 340

Query: 129 AQRRSPSLDKHSRSPSPTEHHRSLSPIRHNRLPSPAQHRRSPSPEWRRRSPSPEWRRRSP 188
            +RRSPS  +H RSPSP     S SPIR  R PSP++ RRSP P  RRRSPSP  RRRSP
Sbjct: 341 LRRRSPSPVQHRRSPSPVRRRGSPSPIRRRRSPSPSRRRRSP-PIRRRRSPSPIRRRRSP 400

Query: 189 SPKWSRR-------SPSPKWRRRSPSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRS 248
           SP   R        SPSP  RR   SP  SHRSPSP   R +P P    RSP+P  +RRS
Sbjct: 401 SPLHHRSPSPTRRISPSPVQRRYQRSPLASHRSPSPIGYR-APMPS-HLRSPTPS-QRRS 460

Query: 249 PSPKWSRWSPSPRRRRRSPSPRRRRRSPSPRRRRRSPSPRR-RHRSPSPVRCR-----RS 308
           PSP  S  S S   RRR PSP RR      RR   +   +   +   SPV CR     RS
Sbjct: 461 PSPYES--SSSSPVRRRHPSPVRRTSLYDGRRSTHTHREKYGTYEKLSPVACRPSSSLRS 520

Query: 309 PTP-------IRRRRSPTPVRRRRSPTPVRRRRSPSPIRSQRSTSSPRHYRSPSPHRRKS 368
           P         +R+R S       RSPT      SP  +  +RSTS  R + SP     +S
Sbjct: 521 PQQDLKDRKDLRKRESAFSPSPERSPTV---SESPPRLTRKRSTSEDRSF-SPD----ES 580

Query: 369 PSLVRRHRSPSPAHYWRSPSPI-KRHPSRSPRQCSMLPSSSPIQKLDRPS--PHDHHITP 428
           P    R R     +   SP P  +RH   +        ++      DR S  PH+  +  
Sbjct: 581 PVRQTRERMVCDGNISPSPRPRERRHQDDTETSKEGKENNRARDDGDRKSVLPHERSVLS 640

Query: 429 SPLERRSPSSPARLK------------------RSSLSQHRSISPYGLSYSSKERGNRSP 488
           + + R+   SP R++                    +  Q RS + Y  S S   + +  P
Sbjct: 641 ATVSRQR-GSPVRIRCKKEHSPGSERLSGRGGRPETFEQQRSPALYEGSLSGDRQRSTYP 700

Query: 489 VKVKSPRVRTSDEKSYSRRGKAKEAEARIVENN----------NNRGEVSDSDMEEGYKR 548
            + K      S+E++ S R   K+++ R    N          NNR +  DS  EE  K 
Sbjct: 701 GESK-----ISEERNRSYRNNGKDSDGRSKTENATMEAGNVDKNNRSDSFDSGSEENGKH 760

Query: 549 KTRSKGRKRHRRSDRSDTSSERRHRRSDRRDTSSESEDSYDSELERKEARRRKEEERRWR 608
           KT+ K +              R+H++  R + +S+ ++SYDSE+++K+A+RR++EE++ R
Sbjct: 761 KTKIKDK--------------RKHKKHGREEVASDGDNSYDSEIDKKDAKRRRKEEKKLR 820

Query: 609 KEKKRQRREEHGRKKEKRRAEKTNAKTLSD-DCSDDGRAVREECRPSDG-AYEAEQRRLE 632
           +E+KR+RR+E  R+KE+RRA K   K  SD D SDD  A R E RPSD    E++Q+RLE
Sbjct: 821 REEKRRRRDERRRRKEERRAAKLKMKNQSDADASDDEHAPRREYRPSDDEETESDQKRLE 846

[Close]

BLAST of CmaCh13G001070.1 vs. TrEMBL
Match: A0A067FH06_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003124mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.8e-28
Identity = 254/679 (37.41%), Postives = 335/679 (49.34%), Query Frame = 1


Query: 9   MRNHSEDEEEAEKSNG-VRGRSSDGHKSRSISRSPQQLRDSFSQGRLSISPCRRDH-RGS 68
           + + S       KSN   R  S D  KSRS+SRSP+  R S S  R SI+P RR   R S
Sbjct: 182 LSHRSSPSRSISKSNSNSRSYSDDRRKSRSVSRSPKVRRRSISPRRQSITPRRRHSPRRS 241

Query: 69  SSPRHRSSD-SRRSRSTSHRKSLSPVVHQLQSPSQHSSPSPRCKSPYQLSSSGQSRSSSP 128
            SP  R S   RRSRS S R+S SPV  +L+SP +  SP P                   
Sbjct: 242 RSPSRRLSYFRRRSRSHSPRRSPSPVRRRLRSPFRGKSPMP------------------- 301

Query: 129 AQRRSPSLDKHSRSPSPTEHHRSLSPIRHNRLPSPAQHRRSPSPEWRRRSPSPEWRRRSP 188
            +RRSPS  +H RSPSP     S SPIR  R PSP++ RRSP P  RRRSPSP  RRRSP
Sbjct: 302 LRRRSPSPVQHRRSPSPVRRRGSPSPIRRRRSPSPSRRRRSP-PIRRRRSPSPIRRRRSP 361

Query: 189 SPKWSRR-------SPSPKWRRRSPSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRS 248
           SP   R        SPSP  RR   SP  SHRSPSP   R +P P    RSP+P  +RRS
Sbjct: 362 SPLHHRSPSPTRRISPSPVQRRYQRSPLASHRSPSPIGYR-APMPS-HLRSPTPS-QRRS 421

Query: 249 PSPKWSRWSPSPRRRRRSPSPRRRRRSPSPRRRRRSPSPRR-RHRSPSPVRCR-----RS 308
           PSP  S  S S   RRR PSP RR      RR   +   +   +   SPV CR     RS
Sbjct: 422 PSPYES--SSSSPVRRRHPSPVRRTSLYDGRRSTHTHREKYGTYEKLSPVACRPSSSLRS 481

Query: 309 PTP-------IRRRRSPTPVRRRRSPTPVRRRRSPSPIRSQRSTSSPRHYRSPSPHRRKS 368
           P         +R+R S       RSPT      SP  +  +RSTS  R + SP     +S
Sbjct: 482 PQQDLKDRKDLRKRESAFSPSPERSPTV---SESPPRLTRKRSTSEDRSF-SPD----ES 541

Query: 369 PSLVRRHRSPSPAHYWRSPSPI-KRHPSRSPRQCSMLPSSSPIQKLDRPS--PHDHHITP 428
           P    R R     +   SP P  +RH   +        ++      DR S  PH+  +  
Sbjct: 542 PVRQTRERMVCDGNISPSPRPRERRHQDDTETSKEGKENNRARDDGDRKSVLPHERSVLS 601

Query: 429 SPLERRSPSSPARLK------------------RSSLSQHRSISPYGLSYSSKERGNRSP 488
           + + R+   SP R++                    +  Q RS + Y  S S   + +  P
Sbjct: 602 ATVSRQR-GSPVRIRCKKEHSPGSERLSGRGGRPETFEQQRSPALYEGSLSGDRQRSTYP 661

Query: 489 VKVKSPRVRTSDEKSYSRRGKAKEAEARIVENN----------NNRGEVSDSDMEEGYKR 548
            + K      S+E++ S R   K+++ R    N          NNR +  DS  EE  K 
Sbjct: 662 GESK-----ISEERNRSYRNNGKDSDGRSKTENATMEAGNVDKNNRSDSFDSGSEENGKH 721

Query: 549 KTRSKGRKRHRRSDRSDTSSERRHRRSDRRDTSSESEDSYDSELERKEARRRKEEERRWR 608
           KT+ K +              R+H++  R + +S+ ++SYDSE+++K+A+RR++EE++ R
Sbjct: 722 KTKIKDK--------------RKHKKHGREEVASDGDNSYDSEIDKKDAKRRRKEEKKLR 781

Query: 609 KEKKRQRREEHGRKKEKRRAEKTNAKTLSD-DCSDDGRAVREECRPSDG-AYEAEQRRLE 632
           +E+KR+RR+E  R+KE+RRA K   K  SD D SDD  A R E RPSD    E++Q+RLE
Sbjct: 782 REEKRRRRDERRRRKEERRAAKLKMKNQSDADASDDEHAPRREYRPSDDEETESDQKRLE 807

[Close]

BLAST of CmaCh13G001070.1 vs. TrEMBL
Match: A0A067FGX4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003124mg PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.8e-28
Identity = 254/679 (37.41%), Postives = 335/679 (49.34%), Query Frame = 1


Query: 9   MRNHSEDEEEAEKSNG-VRGRSSDGHKSRSISRSPQQLRDSFSQGRLSISPCRRDH-RGS 68
           + + S       KSN   R  S D  KSRS+SRSP+  R S S  R SI+P RR   R S
Sbjct: 71  LSHRSSPSRSISKSNSNSRSYSDDRRKSRSVSRSPKVRRRSISPRRQSITPRRRHSPRRS 130

Query: 69  SSPRHRSSD-SRRSRSTSHRKSLSPVVHQLQSPSQHSSPSPRCKSPYQLSSSGQSRSSSP 128
            SP  R S   RRSRS S R+S SPV  +L+SP +  SP P                   
Sbjct: 131 RSPSRRLSYFRRRSRSHSPRRSPSPVRRRLRSPFRGKSPMP------------------- 190

Query: 129 AQRRSPSLDKHSRSPSPTEHHRSLSPIRHNRLPSPAQHRRSPSPEWRRRSPSPEWRRRSP 188
            +RRSPS  +H RSPSP     S SPIR  R PSP++ RRSP P  RRRSPSP  RRRSP
Sbjct: 191 LRRRSPSPVQHRRSPSPVRRRGSPSPIRRRRSPSPSRRRRSP-PIRRRRSPSPIRRRRSP 250

Query: 189 SPKWSRR-------SPSPKWRRRSPSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRS 248
           SP   R        SPSP  RR   SP  SHRSPSP   R +P P    RSP+P  +RRS
Sbjct: 251 SPLHHRSPSPTRRISPSPVQRRYQRSPLASHRSPSPIGYR-APMPS-HLRSPTPS-QRRS 310

Query: 249 PSPKWSRWSPSPRRRRRSPSPRRRRRSPSPRRRRRSPSPRR-RHRSPSPVRCR-----RS 308
           PSP  S  S S   RRR PSP RR      RR   +   +   +   SPV CR     RS
Sbjct: 311 PSPYES--SSSSPVRRRHPSPVRRTSLYDGRRSTHTHREKYGTYEKLSPVACRPSSSLRS 370

Query: 309 PTP-------IRRRRSPTPVRRRRSPTPVRRRRSPSPIRSQRSTSSPRHYRSPSPHRRKS 368
           P         +R+R S       RSPT      SP  +  +RSTS  R + SP     +S
Sbjct: 371 PQQDLKDRKDLRKRESAFSPSPERSPTV---SESPPRLTRKRSTSEDRSF-SPD----ES 430

Query: 369 PSLVRRHRSPSPAHYWRSPSPI-KRHPSRSPRQCSMLPSSSPIQKLDRPS--PHDHHITP 428
           P    R R     +   SP P  +RH   +        ++      DR S  PH+  +  
Sbjct: 431 PVRQTRERMVCDGNISPSPRPRERRHQDDTETSKEGKENNRARDDGDRKSVLPHERSVLS 490

Query: 429 SPLERRSPSSPARLK------------------RSSLSQHRSISPYGLSYSSKERGNRSP 488
           + + R+   SP R++                    +  Q RS + Y  S S   + +  P
Sbjct: 491 ATVSRQR-GSPVRIRCKKEHSPGSERLSGRGGRPETFEQQRSPALYEGSLSGDRQRSTYP 550

Query: 489 VKVKSPRVRTSDEKSYSRRGKAKEAEARIVENN----------NNRGEVSDSDMEEGYKR 548
            + K      S+E++ S R   K+++ R    N          NNR +  DS  EE  K 
Sbjct: 551 GESK-----ISEERNRSYRNNGKDSDGRSKTENATMEAGNVDKNNRSDSFDSGSEENGKH 610

Query: 549 KTRSKGRKRHRRSDRSDTSSERRHRRSDRRDTSSESEDSYDSELERKEARRRKEEERRWR 608
           KT+ K +              R+H++  R + +S+ ++SYDSE+++K+A+RR++EE++ R
Sbjct: 611 KTKIKDK--------------RKHKKHGREEVASDGDNSYDSEIDKKDAKRRRKEEKKLR 670

Query: 609 KEKKRQRREEHGRKKEKRRAEKTNAKTLSD-DCSDDGRAVREECRPSDG-AYEAEQRRLE 632
           +E+KR+RR+E  R+KE+RRA K   K  SD D SDD  A R E RPSD    E++Q+RLE
Sbjct: 671 REEKRRRRDERRRRKEERRAAKLKMKNQSDADASDDEHAPRREYRPSDDEETESDQKRLE 696

[Close]

BLAST of CmaCh13G001070.1 vs. TAIR10
Match: AT2G29210.1 (AT2G29210.1 splicing factor PWI domain-containing protein)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-12
Identity = 226/636 (35.53%), Postives = 307/636 (48.27%), Query Frame = 1


Query: 36  RSISRSP--QQLRDSFSQGRLSISPCRRDHRGSSSPRHRSSDS---RRSRSTS----HRK 95
           RS SRSP  +  R +    R S +P RR    S   R R S S   RR RS S      +
Sbjct: 282 RSRSRSPIRRHRRPTHEGRRQSPAPSRRRRSPSPPARRRRSPSPPARRRRSPSPPARRHR 341

Query: 96  SLSPVVHQLQSPS----QHSSPSP--RCKSPYQLSSSGQSRSSSPAQRRSPS-LDKHSRS 155
           S +P   Q +SPS    +H SP P  R +SP   +   +S S    +RRSPS L + +RS
Sbjct: 342 SPTPPARQRRSPSPPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRS 401

Query: 156 PSPT-EHHRSLSPI-RHNRLPSPAQHRRSPSPEWRRRSP------SPEWRRRSPSPKWSR 215
           PSP    +RS SP+ +  R  SP    RSPSP  R R P      SP   +R PSP  ++
Sbjct: 402 PSPLYRRNRSRSPLAKRGRSDSPG---RSPSPVARLRDPTGARLPSPSIEQRLPSPPVAQ 461

Query: 216 RSPSPKWRRRS-PSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRSPSPKWSRWSPSP 275
           R PSP  RR   PSP  + R PSP  RR       R           SPSP  S  SP  
Sbjct: 462 RLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESPSP--SSLSPPG 521

Query: 276 RRRRRSPSPRRRRRSPSPRRRRRSPSPRRRHRSPSPVRCRRSPTPIRRRRSPTPVRRRRS 335
           R++     P RRRRS +P   R S S   RH SPS ++   S +P+R R   +P  R + 
Sbjct: 522 RKKVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSMSPVRGRGKSSPSSRHQK 581

Query: 336 PTPVRRRRSPSPI--RSQRSTSSPRHYRSPSPHRRKSPSLVRR-HRSPSPAHYWRSPSPI 395
                RRRSP+P+  RS+RS+S+ R   SP   RR+SPS  R   RS SP    RSPSP 
Sbjct: 582 ARSPVRRRSPTPVNRRSRRSSSASR---SPDRRRRRSPSSSRSPSRSRSPPVLHRSPSPR 641

Query: 396 -------KRHPSRSPRQCSMLPSSSPIQKLDRPSPHDHHITPSPL---ERRSPSSPARLK 455
                  +R P R   +   + +S  +++   P        P  L    R         K
Sbjct: 642 GRKHQRERRSPGRLSEEQDRVQNSKLLKRTSVPDTDKRKQLPEKLLEVGRVEHYKEQERK 701

Query: 456 RSSLSQHRSISPYGLSYSSKERGNRSPVKVKSPRVRTSDEKSYSRRGKAKEAEARIVENN 515
              LS+ RS+  +  S  S               V  S+ +S     K K++E   VE  
Sbjct: 702 SDKLSEKRSVHRHHGSQMSP--------------VENSEGRSRPVSSKVKDSEQ--VEKE 761

Query: 516 NNRGEVSDSDMEEGYKRKTRSKGRKRHRRSDRSDTSSERRHRRSDRRDTSSESEDSYDSE 575
           +N      SD++        SK   RH+  D++     R+++RS R + SS+   S DS+
Sbjct: 762 DN------SDLDANLS--CDSKDTIRHQIKDKN----RRKNKRSSREEVSSDDNGSSDSD 821

Query: 576 LE-RKEARRRKEEERRWRKEKKRQRREEHGRKKEKRRAEKTNAKTLSDDCSDDGRAVREE 632
           ++ RKEA+RR++EE++ RKE+K++RREE  RK+E+RR  K   K      + +G     E
Sbjct: 822 VDDRKEAKRRRKEEKKTRKEEKKRRREERHRKREERRGGKEKHKKQELSDTSEGEV---E 878

[Close]

BLAST of CmaCh13G001070.1 vs. NCBI nr
Match: gi|659115223|ref|XP_008457448.1| (PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis melo])

HSP 1 Score: 311.2 bits (796), Expect = 4.1e-81
Identity = 296/559 (52.95%), Postives = 336/559 (60.11%), Query Frame = 1


Query: 5   RSTAMRNHSEDEEEAEKSNGVRGRSSDGHKSRSISRSPQQLRDSFSQGRLSISPCRRDHR 64
           RS AMRN+ EDEE AEK NGVRGRSSD HKSRS+S SPQ+ R SFS+GR S SP RRDHR
Sbjct: 183 RSRAMRNYPEDEEVAEKRNGVRGRSSDRHKSRSMSGSPQRRRRSFSRGRSSSSPRRRDHR 242

Query: 65  GSSSPRHRSSD-SRRSRSTSHRKSLSPVVHQLQSPSQHSSPSPRCKSPYQLSSSGQSRSS 124
            S SPRHRSS   RRS STSHRKS SP V QL+SPSQHSSPSP  KSPY+ SS  Q  SS
Sbjct: 243 DSFSPRHRSSHLRRRSSSTSHRKSRSPKVRQLRSPSQHSSPSPHRKSPYRSSSPVQRLSS 302

Query: 125 SPAQRRSPSLDKHSRSPSPTEHHRSLSPIRHNRLPSPAQHRRSPSPEWRRRSPSPEWRRR 184
           SP  RRSPSLD                  +HNR PSP++HRRS SP  RRRSPSP  RRR
Sbjct: 303 SPTHRRSPSLD------------------KHNRSPSPSRHRRSLSPVRRRRSPSPVRRRR 362

Query: 185 SPSPKWSRRSPSPKWRRRSPSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRSPSPKW 244
           SPSPKW RRSPSP                  EWRRRSPSP  RRRSPSP  RRRSPSP  
Sbjct: 363 SPSPKWRRRSPSP------------------EWRRRSPSPVRRRRSPSPGRRRRSPSPGR 422

Query: 245 SRWSPSPRRRRRSPSPRRRRRSPSPRRRRRSPSPRRRHRSPSPVRCRRSPTPIRRRRSPT 304
            R SPSP RRRRSPSP RRRRSPSP RRRRSP+P RRHRSPSP R R+SP+ +RRRRSP+
Sbjct: 423 RRRSPSPIRRRRSPSPIRRRRSPSPIRRRRSPTPSRRHRSPSPYR-RKSPSFVRRRRSPS 482

Query: 305 PVRRRRSPTPVRRRRSPSPIRSQRSTSSPRHYRSPSPHRRKSPSLVRRHRSPSPAHYWRS 364
           P  RRRSP+P   RRSPSPI+S +S S  R   SP      SPS  R+    SP  + R+
Sbjct: 483 PSHRRRSPSPAHYRRSPSPIKSHKSRSPVRRPMSP------SPSPARKLDRSSPFDHRRT 542

Query: 365 PSPIKRHPSRSPRQCSMLPSSSPIQKLDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQ 424
           PSP++R   RSP   S   S SP                 PL +R  SSP   +RSS SQ
Sbjct: 543 PSPLER---RSP---STSLSKSP-----------------PLPQR--SSPGLRQRSSPSQ 602

Query: 425 HRSISPYGLSYSSKERGNRSPVKVKSPR----------------VRTSDEKSY-SRRGKA 484
           H   S YG SYSS+E+ N SPVKVKS +                V+TS      SR  ++
Sbjct: 603 HGRRSTYGRSYSSEEQENLSPVKVKSAQHRRRSLSQSPMDRSRNVQTSPASQLPSRSLRS 662

Query: 485 KEAEARIVENNNNRGEVSDSDMEEGYKRKTRSKGRKRHRRSDRSDTSSERRHRRSDRRDT 544
            E +A    N+NNR  VS S +E+       S    +    DR   SS R   +  RRDT
Sbjct: 663 PERDATEWNNSNNRARVSSSSLEKS-PAPANSPPVTKSANDDRR-LSSPRSRAKQYRRDT 671

[Close]

BLAST of CmaCh13G001070.1 vs. NCBI nr
Match: gi|449455178|ref|XP_004145330.1| (PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis sativus])

HSP 1 Score: 285.4 bits (729), Expect = 2.4e-73
Identity = 278/545 (51.01%), Postives = 313/545 (57.43%), Query Frame = 1


Query: 5   RSTAMRNHSEDEEEAEKSNGVRGRSSDGHKSRSISRSPQQLRDSFSQGRLSISPCRRDHR 64
           RS AMRN+ EDEE AEK NGVRGRSSD HKSRS+SRSPQ+ R SFS+GR S SP RRD R
Sbjct: 183 RSRAMRNYPEDEEVAEKRNGVRGRSSDRHKSRSMSRSPQRRRRSFSRGRSSSSPRRRDRR 242

Query: 65  GSSSPRHRSSD-SRRSRSTSHRKSLSPVVHQLQSPSQHSSPSPRCKSPYQLSSSGQSRSS 124
            S SPRHRSS   RRS STSHRKS SP V QL+SPSQHSSPSP  KSPY+ SS  Q  S 
Sbjct: 243 DSFSPRHRSSHLMRRSGSTSHRKSRSPEVRQLRSPSQHSSPSPGRKSPYRSSSPMQRLSL 302

Query: 125 SPAQRRSPSLDKHSRSPSPTEHHRSLSPIRHNRLPSPAQHRRSPSPEWRRRSPSPEWRRR 184
           SPA RRSP+LDKH+RSPSPT H RSLSPIR                           RRR
Sbjct: 303 SPAHRRSPALDKHNRSPSPTRHRRSLSPIR---------------------------RRR 362

Query: 185 SPSPKWSRRSPSPKWRRRSPSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRSPSPKW 244
           SPSP   RRSPSPK                  WRRRSPSPEWRRRSPSP  RRR      
Sbjct: 363 SPSPVRRRRSPSPK------------------WRRRSPSPEWRRRSPSPGRRRR------ 422

Query: 245 SRWSPSPRRRRRSPSPRRRRRSPSPRRRRRSPSPRRRHRSPSPVRCRRSPTPIRRRRSPT 304
              SPSP RR RSPSP RRRRSPSP RRRRSPSP RRHRSPSP R R+SP+ +RRRRSP+
Sbjct: 423 ---SPSPIRRWRSPSPIRRRRSPSPIRRRRSPSPPRRHRSPSPYR-RKSPSFVRRRRSPS 482

Query: 305 PVRRRRSPTPVRRRRSPSPIRSQRSTSSPRHYRSPSPHRRKSPSLVRRHRSPSPAHYWRS 364
           P  RRRSP+P   RRSPSPI+S +S S  R    P      SPS  R+    SP  + R+
Sbjct: 483 PSHRRRSPSPAHYRRSPSPIKSHKSRSPVRRPMLP------SPSPTRKLDRSSPLDHRRT 542

Query: 365 PSPIKRHPSRSPRQCSMLPSSSPIQKLDRPSPHDHHITPSPLERRSPSSPARLKRSSLSQ 424
           PSP++R   RSP   + L  S P+  L R SP                     KRSS SQ
Sbjct: 543 PSPLER---RSP--STSLSKSPPL--LQRSSPG------------------LRKRSSPSQ 602

Query: 425 HRSISPYGLSYSSKERGNRSPVKVKSPR----------------VRTSDEKSY-SRRGKA 484
           H   S YG SYSS+E+ N SPVKVKS +                V+TS      SR  ++
Sbjct: 603 HGRRSTYGRSYSSEEQENPSPVKVKSAQHRRRSLSQSPMDRSRNVQTSPASQLPSRSLRS 639

Query: 485 KEAEARIVENNNNRGEVSDSDMEEGYKRKTRSKGRKRHRRSDRSDTSSERRHRRSDRRDT 532
            E +A+   N+NNR   S S +E+       S         DR   SS +   +  RRDT
Sbjct: 663 PERDAKERNNSNNRARASSSSLEKS-PAPANSPPVTSSANDDRR-LSSPQSRAKQHRRDT 639

[Close]

BLAST of CmaCh13G001070.1 vs. NCBI nr
Match: gi|403178125|ref|XP_003336568.2| (hypothetical protein PGTG_17879 [Puccinia graminis f. sp. tritici CRL 75-36-700-3])

HSP 1 Score: 161.0 bits (406), Expect = 6.9e-36
Identity = 191/362 (52.76%), Postives = 211/362 (58.29%), Query Frame = 1


Query: 17  EEAEKSNGVRGRSSDGHKSRSISRSPQQLRDSFSQGRLSISPCRRDHRGSSSPRHRSSDS 76
           +EAE S+     SSD   S S + S     DS S  R S+S  RR  R    PR  S   
Sbjct: 627 DEAEASSDDDDSSSD-ISSISSTDSSDSDSDSSSSDRSSVSRDRRGARNGRRPRRDSPSP 686

Query: 77  --RRSRSTSHRKSLSPVVHQLQSPSQHSSPSPRCKSPYQLSSSGQSRSSSPAQRR---SP 136
             RR  S  HR S SPV  +L S     SP  R +S   +       S SP +RR   SP
Sbjct: 687 VYRRGASGRHRDSRSPV-RRLDS----RSPVRRRESRSPVRGRD---SRSPVRRRDSRSP 746

Query: 137 SLDKHSR-SPSPTEHHRSLSPIRHNRLPSPAQHRRSPSPEWRRRSPSPEWRRRSPSPKWS 196
              + SR S SP    RS SP+R    PSP + R SPSP  RR SPSP  RR SPS    
Sbjct: 747 VRRRESRDSRSPVRRRRSPSPVRRRGSPSPVRRRGSPSPVRRRGSPSPVRRRGSPSQVRH 806

Query: 197 RRSPSPKWRRRSPSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRSPSPKWSRWSPSP 256
           R SPSP  RR SPSP    RSPSP  RR SP P  RR SPSP  RR SPSP   R SPSP
Sbjct: 807 RDSPSPVRRRGSPSPVRRRRSPSPARRRGSPPPR-RRGSPSPVRRRGSPSPVRHRDSPSP 866

Query: 257 RRRRRSPSPRRRRRSPSPRRRRRSPSPRRRHRSPSPVRCRRSPTPIRRRRSPTPVRRRRS 316
            RRR SPSP RRR SPSP RRR SPSP RR  SPSPVR R SP+P+RRRRSP+PVRRR S
Sbjct: 867 VRRRDSPSPDRRRDSPSPVRRRGSPSPVRRRGSPSPVRRRGSPSPLRRRRSPSPVRRRGS 926

Query: 317 PTPVRRRRSPSPIRSQRSTSSPRHYRSPSPHRRK---SPSLVRRHRSPSPAHYWRSPSPI 370
           P+PVRRR SPSP+R + S S  R   SPSP RR+   SPS VRR  SPSP     SPSP+
Sbjct: 927 PSPVRRRDSPSPVRRRDSPSPVRRRDSPSPVRRRDSPSPSPVRRRGSPSPVRRRGSPSPV 978

[Close]

BLAST of CmaCh13G001070.1 vs. NCBI nr
Match: gi|1009115045|ref|XP_015874017.1| (PREDICTED: serine/arginine repetitive matrix protein 1 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 138.3 bits (347), Expect = 4.8e-29
Identity = 227/545 (41.65%), Postives = 273/545 (50.09%), Query Frame = 1


Query: 8   AMRNHSEDEEEAEKSNGVRGRSSDGHKSRSISRSPQQLRDSFSQGRLSISPCRRDHRGSS 67
           A  +HSED +EA K NGVR        +  +SRSP+        G  S+SP R     S 
Sbjct: 187 ASSDHSEDAKEAVKRNGVRA-------THRVSRSPRLA------GHYSLSPRRGSPARSI 246

Query: 68  SPRH---RSSDSRRSRSTSHRKSLSPVVHQLQSPSQHSSPSPRCKSPYQLSSSGQSRSSS 127
           S  H   RS    RSRS S  +S       + S   + SP  R  +P +  S    RS S
Sbjct: 247 SKSHSDTRSYSGERSRSKSASRSPEERGRSISSERVYLSPRRRSVTPRRRDSP--RRSKS 306

Query: 128 PAQRRSPSLDKHSRSPSPTEHHRSLSPIRHNRLPSPAQHRRSPSPEWRRRSPSPEWRRRS 187
           P + R   L   SRSPS   H R +SP R          RRSPS   R RSPSP   RRS
Sbjct: 307 PIRGRPLKLRGRSRSPSSLRH-RLVSPYR----------RRSPSIG-RCRSPSPLRHRRS 366

Query: 188 PSPKWSRRSPSPKWRRRSPSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRSPSPKWS 247
           P+P   RRSPSP  RRRSPS      SPSP WRRRSPSP  R RSPSP  RRRSPS    
Sbjct: 367 PTPVRRRRSPSPVRRRRSPSHVRRRASPSPLWRRRSPSPVRRHRSPSPVRRRRSPS---- 426

Query: 248 RWSPSPRRRRRSPSPRRRRRSPSPRRRRRSPSPRRRHRSPSPVRCRRSPTPIRRRRSPTP 307
                   R RSPSP RRR SPSP RRR SPSP RR  SPSP+  R SP+P+RRR SP+ 
Sbjct: 427 --------RHRSPSPVRRRISPSPIRRRVSPSPIRRRMSPSPIHRRMSPSPVRRRASPSS 486

Query: 308 VRRRRSPTPVRRRRSPSPIRSQRSTSSPRHYRSPSPHRRK-SPS-LVRRHRSPSPAHYWR 367
           VRRR SP+PVRRR   SP+RS     SP    SPSP RR+ SPS  VRR  SPSP  +  
Sbjct: 487 VRRRASPSPVRRR--ASPLRSPVGGMSP----SPSPLRRRVSPSPPVRRRMSPSPVQHSV 546

Query: 368 SPSPIKRHPSRSPRQCSMLPSSSPIQKLDRPSPHDHHITPSPLERRSPSSPARLKRSSLS 427
           SPSP +R   R         SSSP            H   SP++ RS +      R S  
Sbjct: 547 SPSPKRRRSQR---------SSSPA-----------HRYASPVQCRSSAG----GRRSTP 606

Query: 428 QHRSISPYGLSYSSKERGNRSPVKVKSPRVRTSDEKSYSRRGKAKEAEARIVENNNNRGE 487
             RS+SPY  S SS   G+  P++ +SP+ + S  +S SR           +   ++  E
Sbjct: 607 GSRSLSPYERSSSSPPHGSSLPIRRRSPKNQGSLVQSPSREKIRTRERLSPISRRSSSEE 659

Query: 488 VSDSDMEEGYKRKTRSKGRKRHRRSDRSDTSSERRHRRSDR-RDTSSESEDSYDSELERK 547
            S S+    YK   +   + R R    +++S  RR R     RD S  SE+  D + + K
Sbjct: 667 RSASEGRSPYKSPLK---QPRERMKYDNNSSPARRPREQKLVRDNSEMSEEEKDGDQKTK 659

[Close]

BLAST of CmaCh13G001070.1 vs. NCBI nr
Match: gi|641847761|gb|KDO66639.1| (hypothetical protein CISIN_1g003124mg [Citrus sinensis])

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-28
Identity = 254/679 (37.41%), Postives = 335/679 (49.34%), Query Frame = 1


Query: 9   MRNHSEDEEEAEKSNG-VRGRSSDGHKSRSISRSPQQLRDSFSQGRLSISPCRRDH-RGS 68
           + + S       KSN   R  S D  KSRS+SRSP+  R S S  R SI+P RR   R S
Sbjct: 71  LSHRSSPSRSISKSNSNSRSYSDDRRKSRSVSRSPKVRRRSISPRRQSITPRRRHSPRRS 130

Query: 69  SSPRHRSSD-SRRSRSTSHRKSLSPVVHQLQSPSQHSSPSPRCKSPYQLSSSGQSRSSSP 128
            SP  R S   RRSRS S R+S SPV  +L+SP +  SP P                   
Sbjct: 131 RSPSRRLSYFRRRSRSHSPRRSPSPVRRRLRSPFRGKSPMP------------------- 190

Query: 129 AQRRSPSLDKHSRSPSPTEHHRSLSPIRHNRLPSPAQHRRSPSPEWRRRSPSPEWRRRSP 188
            +RRSPS  +H RSPSP     S SPIR  R PSP++ RRSP P  RRRSPSP  RRRSP
Sbjct: 191 LRRRSPSPVQHRRSPSPVRRRGSPSPIRRRRSPSPSRRRRSP-PIRRRRSPSPIRRRRSP 250

Query: 189 SPKWSRR-------SPSPKWRRRSPSPKWSHRSPSPEWRRRSPSPEWRRRSPSPEWRRRS 248
           SP   R        SPSP  RR   SP  SHRSPSP   R +P P    RSP+P  +RRS
Sbjct: 251 SPLHHRSPSPTRRISPSPVQRRYQRSPLASHRSPSPIGYR-APMPS-HLRSPTPS-QRRS 310

Query: 249 PSPKWSRWSPSPRRRRRSPSPRRRRRSPSPRRRRRSPSPRR-RHRSPSPVRCR-----RS 308
           PSP  S  S S   RRR PSP RR      RR   +   +   +   SPV CR     RS
Sbjct: 311 PSPYES--SSSSPVRRRHPSPVRRTSLYDGRRSTHTHREKYGTYEKLSPVACRPSSSLRS 370

Query: 309 PTP-------IRRRRSPTPVRRRRSPTPVRRRRSPSPIRSQRSTSSPRHYRSPSPHRRKS 368
           P         +R+R S       RSPT      SP  +  +RSTS  R + SP     +S
Sbjct: 371 PQQDLKDRKDLRKRESAFSPSPERSPTV---SESPPRLTRKRSTSEDRSF-SPD----ES 430

Query: 369 PSLVRRHRSPSPAHYWRSPSPI-KRHPSRSPRQCSMLPSSSPIQKLDRPS--PHDHHITP 428
           P    R R     +   SP P  +RH   +        ++      DR S  PH+  +  
Sbjct: 431 PVRQTRERMVCDGNISPSPRPRERRHQDDTETSKEGKENNRARDDGDRKSVLPHERSVLS 490

Query: 429 SPLERRSPSSPARLK------------------RSSLSQHRSISPYGLSYSSKERGNRSP 488
           + + R+   SP R++                    +  Q RS + Y  S S   + +  P
Sbjct: 491 ATVSRQR-GSPVRIRCKKEHSPGSERLSGRGGRPETFEQQRSPALYEGSLSGDRQRSTYP 550

Query: 489 VKVKSPRVRTSDEKSYSRRGKAKEAEARIVENN----------NNRGEVSDSDMEEGYKR 548
            + K      S+E++ S R   K+++ R    N          NNR +  DS  EE  K 
Sbjct: 551 GESK-----ISEERNRSYRNNGKDSDGRSKTENATMEAGNVDKNNRSDSFDSGSEENGKH 610

Query: 549 KTRSKGRKRHRRSDRSDTSSERRHRRSDRRDTSSESEDSYDSELERKEARRRKEEERRWR 608
           KT+ K +              R+H++  R + +S+ ++SYDSE+++K+A+RR++EE++ R
Sbjct: 611 KTKIKDK--------------RKHKKHGREEVASDGDNSYDSEIDKKDAKRRRKEEKKLR 670

Query: 609 KEKKRQRREEHGRKKEKRRAEKTNAKTLSD-DCSDDGRAVREECRPSDG-AYEAEQRRLE 632
           +E+KR+RR+E  R+KE+RRA K   K  SD D SDD  A R E RPSD    E++Q+RLE
Sbjct: 671 REEKRRRRDERRRRKEERRAAKLKMKNQSDADASDDEHAPRREYRPSDDEETESDQKRLE 696

The following BLAST results are available for this feature:

BLAST of CmaCh13G001070.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SRRM1_CHICK	3.3e-06	35.21	Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1	[more]

BLAST of CmaCh13G001070.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVE0_CUCSA	1.7e-73	51.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G524700 PE=4 SV=1	[more]
E3L6H4_PUCGT	4.8e-36	52.76	Uncharacterized protein OS=Puccinia graminis f. sp. tritici (strain CRL 75-36-70...	[more]
A0A067FKH1_CITSI	2.8e-28	37.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003124mg PE=4 SV=1	[more]
A0A067FH06_CITSI	2.8e-28	37.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003124mg PE=4 SV=1	[more]
A0A067FGX4_CITSI	2.8e-28	37.41	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003124mg PE=4 SV=1	[more]

BLAST of CmaCh13G001070.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G29210.1	1.1e-12	35.53	splicing factor PWI domain-containing protein	[more]

BLAST of CmaCh13G001070.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115223\|ref\|XP_008457448.1\|	4.1e-81	52.95	PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis melo]	[more]
gi\|449455178\|ref\|XP_004145330.1\|	2.4e-73	51.01	PREDICTED: serine/arginine repetitive matrix protein 1 [Cucumis sativus]	[more]
gi\|403178125\|ref\|XP_003336568.2\|	6.9e-36	52.76	hypothetical protein PGTG_17879 [Puccinia graminis f. sp. tritici CRL 75-36-700-...	[more]
gi\|1009115045\|ref\|XP_015874017.1\|	4.8e-29	41.65	PREDICTED: serine/arginine repetitive matrix protein 1 isoform X1 [Ziziphus juju...	[more]
gi\|641847761\|gb\|KDO66639.1\|	4.0e-28	37.41	hypothetical protein CISIN_1g003124mg [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh13G001070	CmaCh13G001070	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh13G001070.1	CmaCh13G001070.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G001070.1.CDS.3	CmaCh13G001070.1.CDS.3	CDS
CmaCh13G001070.1.CDS.2	CmaCh13G001070.1.CDS.2	CDS
CmaCh13G001070.1.CDS.1	CmaCh13G001070.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh13G001070.1.exon.3	CmaCh13G001070.1.exon.3	exon
CmaCh13G001070.1.exon.2	CmaCh13G001070.1.exon.2	exon
CmaCh13G001070.1.exon.1	CmaCh13G001070.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 531..558 scor