CmaCh12G013320.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G013320.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Transmembrane protein
Location	Cma_Chr12 : 10138986 .. 10143570 (-)
Sequence length	608

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGCGATGTTCTCTCTCCCAGTTGTTTTGGTTGCAGAATTTGAAGTGCGAAGCCGAGACCAGACCGTAGAGCTGTTCCAGAGTTGTCCGCCATTTCCGTTCCTGAAGCTTCCTGGCTAGTCTTTTCTTTTGTTTGTTCTTATTATGTTTATTTGAAAGCTTAATTAAACAGTCACTTCGTCATACTGAATCAGTGGATTGAAGGTCAGTGTGACGCAAGAATGAAGACTCCGATTTCTATCTCACCGCAGCAAGACATATATGGAGATCTCTATCAACCAGCACTTATAATTGCCGCTTGCTTTGTGGTTGTCGCTCTGGTGCTCTCCATTTTTCTCATTCTACAGCATCTCAAATCTTACTCCAAGCCGTCGGTAACCGCTTTCATCATCATCATCATCATCTCTGTTCACCTTACTTCAAATCAGAACAGAACTTTACCTACACGTTGAGATCACAGGACACATATTTATTGATTTCAGGTGTTGAAACTAATAATAGCTAATAATAGAATAGAATTTGAATTGGTTTCAAATTCAAATAGAATAGAATTTGAATTGGTTTCAAATTCAAATTCATCCACAAAAATCTCTCAACCGACTACGGAATCACCCTAGAAAATCTCAACCAACTCTGGAATCCCCTATAAAAGGACCTCCCTCCCCATCATTCAAATTACTCCTCCTCTCAATCTCAATTCAGTTTTCTGTTGTCACCAACAACTGGTATCAGAGCAATCTTGCAGCAGCAAAAATGGCAGCAGAAAAACAAGTTGAGAACTACGTTCAATCCGCCATCCCGAGGTTCGACGGTCACTATGATCATTGGGCGATGTTGATGGAAAATTTTCTCAGATCAAAGGAGTTCTTTGATATGGTGGAAACAGGTTATGAAGAGCCAAAGAAGAGGCAGAGGTCGTGAGAGAGGCAGTCGAAAAAGAAGTGGAGATGTTGGCAGGTCAGCAGACCTAGTCAGAAACGATTATGACAACAAAGGCAAGAGACACTTTGACAAATCTAAGGTGGAATGTTACAGATGTGGACGCCTTGGACATTACAAAAATGAATGTTATTCCAGGCTCCAGGCTCCAAAAAGAGAAAAGAAATCAATCCAATTTTGTGGAGAGAAGAGAAGGAAACATTATTAATGTCATTCCATGCTATGAAGGTTGCAGATCAAGGTGTATGGGTCGTAGACTCTGGATGCAGCAATCATATGACAGATTGTAAGAAATTCTTACAATCAACATCGCCCAATGATGTTTCTTACAATCTGTCATATGATTGCTGCATCCAGAGTCTACGACCCATACACCTTGATCTGCAACCTTCATAGCATGGAATGACATTAATAATGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCATTTCTTGCGTGATTTGTGTAAAGAAGGCATTATTGAACTCAACTTTTGCCGAAGTGATGAACAAATCGCAGACCTATTCACAAAGCCCTTGAAACAACCATTGTTCGAGAAGCTCAGAAGAAAGATGGGGATATGCAGAATCCAAGATGTATATCAAGAAGATGAAATGAAGTCCTAAACTGATTTAGGCAGAATTCAGTTTAAGGGAGGGTGTTGAAACTAATAATAGCTAATAATAGAATAGAATTTGAATTGGTTTCAAATTCAAATAGAATAGAATTTGAATTGGTTTCAAATTCAAATTCATCCACAAAAATCTCTCAACCGACTACGGAATCACCCTAGAAAATCTCAACCAACTCTGGAATCCCCTATAAAAGGACCTCCCTCCCCATCATTCAAATTACTCCTCCTCTCAATCTCAATTCAGTTTTCTGTTGTCAGTTTTCTGTTGTCACCAACAACAGGAACAAAAATGGATTGTTGCGGTTCTTTTTATGGTTCCTGTTTATGCCACCGAGTCGGTGAGTCATAATTCCTCCAATCCATTCATCTAATGTATTTATTTGTTAGCCTTGTGGCCGCGTATGCTATAAATTATTCCTCTACAGCAACACTTAACCGTTGGCTACGTGCTTTTCAGATTATATCATTATGGAATCAAAGATTTTCCCTTGAATGTGACATCTTAAGGAACTGCTACGAAGCGTTTGCTTTGTATTCTTTTGGAAGCTATTTGATTGCTTGTCTTGGTAAGCTCCAGGCTACCAGGTTACTCTGCATCTTGGTTCTTTTGCTTGCCTGCTTGTTTGTTTTTTTCAATGATAGAGCAATGGAATGTGTCAAATGTCATCGTTCATGTATTATCCATCAGCCAAATTGAGCACATTGTTTTCTCAAATCTAACTGCCTTATTTTTCCACAAGGTTTCATTAGATAGTTGGGGACTACTTTGCCGGAAAACTGAGAAAGAGTCCCAAAACGAAAATATTATACGAGTAGCAGTAACTGGTAAAAGATTTTTTTCTTGTTTAACAGAAGCCCAATTGACACCCACATAACAATAGAATGTGTTGAACAAATCTGTGGTTCCCTTACCACATTGAAGGAGATTTTTGCAGGTAAGCCAATGATCTTTGATTGA

mRNA sequence

GCGGCGATGTTCTCTCTCCCAGTTGTTTTGGTTGCAGAATTTGAAGTGCGAAGCCGAGACCAGACCGTAGAGCTGTTCCAGAGTTGTCCGCCATTTCCGTTCCTGAAGCTTCCTGGCTAGTCTTTTCTTTTGTTTGTTCTTATTATGTTTATTTGAAAGCTTAATTAAACAGTCACTTCGTCATACTGAATCAGTGGATTGAAGGTCAGTGTGACGCAAGAATGAAGACTCCGATTTCTATCTCACCGCAGCAAGACATATATGGAGATCTCTATCAACCAGCACTTATAATTGCCGCTTGCTTTGTGGTTGTCGCTCTGGTGCTCTCCATTTTTCTCATTCTACAGCATCTCAAATCTTACTCCAAGCCGTCGATTATATCATTATGGAATCAAAGATTTTCCCTTGAATGTGACATCTTAAGGAACTGCTACGAAGCGTTTGCTTTGTATTCTTTTGGAAGCTATTTGATTGCTTGTCTTGGTAAGCTCCAGGCTACCAGAAGCCCAATTGACACCCACATAACAATAGAATGTGTTGAACAAATCTGTGGTTCCCTTACCACATTGAAGGAGATTTTTGCAGGTAAGCCAATGATCTTTGATTGA

Coding sequence (CDS)

ATGAAGACTCCGATTTCTATCTCACCGCAGCAAGACATATATGGAGATCTCTATCAACCAGCACTTATAATTGCCGCTTGCTTTGTGGTTGTCGCTCTGGTGCTCTCCATTTTTCTCATTCTACAGCATCTCAAATCTTACTCCAAGCCGTCGATTATATCATTATGGAATCAAAGATTTTCCCTTGAATGTGACATCTTAAGGAACTGCTACGAAGCGTTTGCTTTGTATTCTTTTGGAAGCTATTTGATTGCTTGTCTTGGTAAGCTCCAGGCTACCAGAAGCCCAATTGACACCCACATAACAATAGAATGTGTTGAACAAATCTGTGGTTCCCTTACCACATTGAAGGAGATTTTTGCAGGTAAGCCAATGATCTTTGATTGA

Protein sequence

MKTPISISPQQDIYGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKPSIISLWNQRFSLECDILRNCYEAFALYSFGSYLIACLGKLQATRSPIDTHITIECVEQICGSLTTLKEIFAGKPMIFD

Homology

[Close]

BLAST of CmaCh12G013320.1 vs. Swiss-Prot
Match: LAZH2_ARATH (Protein LAZ1 homolog 2 OS=Arabidopsis thaliana GN=At1g23070 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.8e-19
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 1


Query: 14  YGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKP-------------------SIIS 73
           Y DL+ P+LII   F  VA+ LS++ ILQHL+ Y+ P                   SIIS
Sbjct: 9   YRDLHLPSLIIGGSFATVAICLSLYSILQHLRFYTNPAEQKWIVSVLFMVPVYATESIIS 68

Query: 74  LWNQRFSLECDILRNCYEAFALYSFGSYLIACLG 89
           L N +FSL CDILRNCYEAFALYSFGSYL+ACLG
Sbjct: 69  LSNSKFSLPCDILRNCYEAFALYSFGSYLVACLG 102

[Close]

BLAST of CmaCh12G013320.1 vs. Swiss-Prot
Match: LAZH1_ARATH (Protein LAZ1 homolog 1 OS=Arabidopsis thaliana GN=At1g77220 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 22  LIIAACFVVVALVLSIFLILQHLKSYSKP-------------------SIISLWNQRFSL 81
           ++ A+ FVV+A++L ++LI +HL SY++P                   S +SL N   + 
Sbjct: 43  ILSASVFVVIAILLPMYLIFEHLASYNQPEEQKFLIGLILMVPVYAVESFLSLVNSEAAF 102

Query: 82  ECDILRNCYEAFALYSFGSYLIACL 88
            C+++R+CYEAFALY F  YLIACL
Sbjct: 103 NCEVIRDCYEAFALYCFERYLIACL 127

[Close]

BLAST of CmaCh12G013320.1 vs. Swiss-Prot
Match: LAZ1_ARATH (Protein LAZ1 OS=Arabidopsis thaliana GN=LAZ1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.5e-09
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 1


Query: 21  ALIIAACFVVVALVLSIFLILQHLKSYSKP-------------------SIISLWNQRFS 80
           A  +A  F+V+ L LS+FL+  HL +Y  P                   S  SL     S
Sbjct: 20  ASFMAGAFLVLTLSLSLFLVFDHLSTYKNPEEQKFLIGVILMVPCYSIESFASLVKPSIS 79

Query: 81  LECDILRNCYEAFALYSFGSYLIACLGKLQAT 94
           ++C ILR+CYE+FA+Y FG YL+AC+G  + T
Sbjct: 80  VDCGILRDCYESFAMYCFGRYLVACIGGEERT 111

[Close]

BLAST of CmaCh12G013320.1 vs. TrEMBL
Match: B9RR83_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0711270 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 4.2e-24
Identity = 62/104 (59.62%), Postives = 72/104 (69.23%), Query Frame = 1


Query: 4   PISISPQQDIYGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKP------------- 63
           P  IS  +D Y DL+QPA+II  CF +VA+VLSIFLI QHL+SY+ P             
Sbjct: 3   PTGISVYKDAYTDLHQPAVIIGGCFALVAVVLSIFLIFQHLRSYTNPAEQKWIVAVLFMV 62

Query: 64  ------SIISLWNQRFSLECDILRNCYEAFALYSFGSYLIACLG 89
                 SIISLWN +FSL CDILRNCYEAFALY+FGSYL+ACLG
Sbjct: 63  PVYATESIISLWNHKFSLVCDILRNCYEAFALYAFGSYLVACLG 106

[Close]

BLAST of CmaCh12G013320.1 vs. TrEMBL
Match: M5VT59_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019973mg PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.1e-24
Identity = 62/100 (62.00%), Postives = 69/100 (69.00%), Query Frame = 1


Query: 8   SPQQDIYGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKP----------------- 67
           S  + IY DLYQPA+II ACF  VALVLSIFLI QHL+ Y+KP                 
Sbjct: 7   SAHESIYRDLYQPAVIIGACFAAVALVLSIFLIFQHLRLYTKPTEQKWVVAVVFMVPVYA 66

Query: 68  --SIISLWNQRFSLECDILRNCYEAFALYSFGSYLIACLG 89
             SI+SLWN + SL CDILRNCYEAFALYSFGSYL+ACLG
Sbjct: 67  TESILSLWNPKLSLACDILRNCYEAFALYSFGSYLVACLG 106

[Close]

BLAST of CmaCh12G013320.1 vs. TrEMBL
Match: W9SNI5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000780 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.7e-23
Identity = 63/101 (62.38%), Postives = 68/101 (67.33%), Query Frame = 1


Query: 7   ISPQQDIYGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKP---------------- 66
           IS  +  Y DL QP LIIA CFVVVA  LSIFLILQHL+SY+ P                
Sbjct: 6   ISDSESFYRDLQQPGLIIAGCFVVVAFSLSIFLILQHLRSYTNPAEQKWIVAVVFMVPVY 65

Query: 67  ---SIISLWNQRFSLECDILRNCYEAFALYSFGSYLIACLG 89
              SIISLWN + SL CDILRNCYEAFALYSFGSYL+ACLG
Sbjct: 66  ATESIISLWNPKLSLACDILRNCYEAFALYSFGSYLVACLG 106

[Close]

BLAST of CmaCh12G013320.1 vs. TrEMBL
Match: F6HGN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00800 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-22
Identity = 61/100 (61.00%), Postives = 69/100 (69.00%), Query Frame = 1


Query: 8   SPQQDIYGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKP----------------- 67
           S  Q  Y +L+QPA+II  CFVVVAL+LSI LI QHL+SY+KP                 
Sbjct: 53  SAYQGTYRNLHQPAVIIGGCFVVVALILSILLIFQHLRSYTKPAEQKWIVAVLFMVPVYA 112

Query: 68  --SIISLWNQRFSLECDILRNCYEAFALYSFGSYLIACLG 89
             SIISLWN R SL CDILR+CYEAFALYSFGSYL+ACLG
Sbjct: 113 CQSIISLWNSRLSLACDILRSCYEAFALYSFGSYLVACLG 152

[Close]

BLAST of CmaCh12G013320.1 vs. TrEMBL
Match: A0A0R0I519_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G071000 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.0e-22
Identity = 58/75 (77.33%), Postives = 63/75 (84.00%), Query Frame = 1


Query: 14 YGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKPSIISLWNQRFSLECDILRNCYEA 73
          Y +L  PALIIA C V+VALVLSI LILQHL+SY+ P+IISLWN R SL CDILRN YEA
Sbjct: 13 YKNLRPPALIIAGCSVLVALVLSILLILQHLRSYTNPAIISLWNPRLSLACDILRNYYEA 72

Query: 74 FALYSFGSYLIACLG 89
          FALYSFG YLIACLG
Sbjct: 73 FALYSFGRYLIACLG 87

[Close]

BLAST of CmaCh12G013320.1 vs. TAIR10
Match: AT1G23070.1 (AT1G23070.1 Protein of unknown function (DUF300))

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-20
Identity = 52/94 (55.32%), Postives = 61/94 (64.89%), Query Frame = 1


Query: 14  YGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKP-------------------SIIS 73
           Y DL+ P+LII   F  VA+ LS++ ILQHL+ Y+ P                   SIIS
Sbjct: 9   YRDLHLPSLIIGGSFATVAICLSLYSILQHLRFYTNPAEQKWIVSVLFMVPVYATESIIS 68

Query: 74  LWNQRFSLECDILRNCYEAFALYSFGSYLIACLG 89
           L N +FSL CDILRNCYEAFALYSFGSYL+ACLG
Sbjct: 69  LSNSKFSLPCDILRNCYEAFALYSFGSYLVACLG 102

[Close]

BLAST of CmaCh12G013320.1 vs. TAIR10
Match: AT1G77220.1 (AT1G77220.1 Protein of unknown function (DUF300))

HSP 1 Score: 63.9 bits (154), Expect = 8.1e-11
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 22  LIIAACFVVVALVLSIFLILQHLKSYSKP-------------------SIISLWNQRFSL 81
           ++ A+ FVV+A++L ++LI +HL SY++P                   S +SL N   + 
Sbjct: 43  ILSASVFVVIAILLPMYLIFEHLASYNQPEEQKFLIGLILMVPVYAVESFLSLVNSEAAF 102

Query: 82  ECDILRNCYEAFALYSFGSYLIACL 88
            C+++R+CYEAFALY F  YLIACL
Sbjct: 103 NCEVIRDCYEAFALYCFERYLIACL 127

[Close]

BLAST of CmaCh12G013320.1 vs. TAIR10
Match: AT4G38360.2 (AT4G38360.2 Protein of unknown function (DUF300))

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-10
Identity = 35/92 (38.04%), Postives = 49/92 (53.26%), Query Frame = 1


Query: 21  ALIIAACFVVVALVLSIFLILQHLKSYSKP-------------------SIISLWNQRFS 80
           A  +A  F+V+ L LS+FL+  HL +Y  P                   S  SL     S
Sbjct: 20  ASFMAGAFLVLTLSLSLFLVFDHLSTYKNPEEQKFLIGVILMVPCYSIESFASLVKPSIS 79

Query: 81  LECDILRNCYEAFALYSFGSYLIACLGKLQAT 94
           ++C ILR+CYE+FA+Y FG YL+AC+G  + T
Sbjct: 80  VDCGILRDCYESFAMYCFGRYLVACIGGEERT 111

[Close]

BLAST of CmaCh12G013320.1 vs. NCBI nr
Match: gi|659071475|ref|XP_008459995.1| (PREDICTED: transmembrane protein 184C isoform X4 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-31
Identity = 75/89 (84.27%), Postives = 78/89 (87.64%), Query Frame = 1


Query: 1  MKTPISISPQQ-DIYGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKPSIISLWNQR 60
          MKT ISI+ QQ DIYGDLYQPAL IA CF V+ALVLS+FLILQHLKSYS PSIISLWN R
Sbjct: 8  MKTSISITLQQEDIYGDLYQPALTIATCFAVIALVLSLFLILQHLKSYSNPSIISLWNSR 67

Query: 61 FSLECDILRNCYEAFALYSFGSYLIACLG 89
          FSL CDILRNCYEAFALYSFG YLIA LG
Sbjct: 68 FSLACDILRNCYEAFALYSFGRYLIASLG 96

[Close]

BLAST of CmaCh12G013320.1 vs. NCBI nr
Match: gi|449446843|ref|XP_004141180.1| (PREDICTED: transmembrane protein 184C isoform X2 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-29
Identity = 76/108 (70.37%), Postives = 79/108 (73.15%), Query Frame = 1


Query: 1   MKTPISISPQQ-DIYGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKP--------- 60
           MKT ISI+PQQ DIYGDLYQPALIIA CF V AL+LS+FLILQHLKSYS P         
Sbjct: 1   MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSEQKWIVAV 60

Query: 61  ----------SIISLWNQRFSLECDILRNCYEAFALYSFGSYLIACLG 89
                     SIISLWN RFSL CDILRNCYEAFALYSFG YLIA LG
Sbjct: 61  LFMVPVYATQSIISLWNSRFSLACDILRNCYEAFALYSFGRYLIASLG 108

[Close]

BLAST of CmaCh12G013320.1 vs. NCBI nr
Match: gi|778665485|ref|XP_011648574.1| (PREDICTED: transmembrane protein 184C isoform X1 [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-29
Identity = 76/108 (70.37%), Postives = 79/108 (73.15%), Query Frame = 1


Query: 1   MKTPISISPQQ-DIYGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKP--------- 60
           MKT ISI+PQQ DIYGDLYQPALIIA CF V AL+LS+FLILQHLKSYS P         
Sbjct: 9   MKTSISITPQQEDIYGDLYQPALIIATCFAVTALMLSLFLILQHLKSYSNPSEQKWIVAV 68

Query: 61  ----------SIISLWNQRFSLECDILRNCYEAFALYSFGSYLIACLG 89
                     SIISLWN RFSL CDILRNCYEAFALYSFG YLIA LG
Sbjct: 69  LFMVPVYATQSIISLWNSRFSLACDILRNCYEAFALYSFGRYLIASLG 116

[Close]

BLAST of CmaCh12G013320.1 vs. NCBI nr
Match: gi|659071467|ref|XP_008459962.1| (PREDICTED: transmembrane protein 184 homolog DDB_G0279555 isoform X1 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 3.1e-28
Identity = 75/108 (69.44%), Postives = 78/108 (72.22%), Query Frame = 1


Query: 1   MKTPISISPQQ-DIYGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKP--------- 60
           MKT ISI+ QQ DIYGDLYQPAL IA CF V+ALVLS+FLILQHLKSYS P         
Sbjct: 8   MKTSISITLQQEDIYGDLYQPALTIATCFAVIALVLSLFLILQHLKSYSNPSEQKWIVAV 67

Query: 61  ----------SIISLWNQRFSLECDILRNCYEAFALYSFGSYLIACLG 89
                     SIISLWN RFSL CDILRNCYEAFALYSFG YLIA LG
Sbjct: 68  LFMVPVYATQSIISLWNSRFSLACDILRNCYEAFALYSFGRYLIASLG 115

[Close]

BLAST of CmaCh12G013320.1 vs. NCBI nr
Match: gi|659071471|ref|XP_008459979.1| (PREDICTED: transmembrane protein 184 homolog DDB_G0279555 isoform X2 [Cucumis melo])

HSP 1 Score: 133.3 bits (334), Expect = 3.1e-28
Identity = 75/108 (69.44%), Postives = 78/108 (72.22%), Query Frame = 1


Query: 1   MKTPISISPQQ-DIYGDLYQPALIIAACFVVVALVLSIFLILQHLKSYSKP--------- 60
           MKT ISI+ QQ DIYGDLYQPAL IA CF V+ALVLS+FLILQHLKSYS P         
Sbjct: 1   MKTSISITLQQEDIYGDLYQPALTIATCFAVIALVLSLFLILQHLKSYSNPSEQKWIVAV 60

Query: 61  ----------SIISLWNQRFSLECDILRNCYEAFALYSFGSYLIACLG 89
                     SIISLWN RFSL CDILRNCYEAFALYSFG YLIA LG
Sbjct: 61  LFMVPVYATQSIISLWNSRFSLACDILRNCYEAFALYSFGRYLIASLG 108

The following BLAST results are available for this feature:

BLAST of CmaCh12G013320.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LAZH2_ARATH	5.8e-19	55.32	Protein LAZ1 homolog 2 OS=Arabidopsis thaliana GN=At1g23070 PE=2 SV=1	[more]
LAZH1_ARATH	1.4e-09	40.00	Protein LAZ1 homolog 1 OS=Arabidopsis thaliana GN=At1g77220 PE=2 SV=1	[more]
LAZ1_ARATH	2.5e-09	38.04	Protein LAZ1 OS=Arabidopsis thaliana GN=LAZ1 PE=1 SV=1	[more]

BLAST of CmaCh12G013320.1 vs. TrEMBL


Match Name	E-value	Identity	Description
B9RR83_RICCO	4.2e-24	59.62	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0711270 PE=4 SV=1	[more]
M5VT59_PRUPE	7.1e-24	62.00	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019973mg PE=4 SV=1	[more]
W9SNI5_9ROSA	2.7e-23	62.38	Uncharacterized protein OS=Morus notabilis GN=L484_000780 PE=4 SV=1	[more]
F6HGN6_VITVI	1.0e-22	61.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g00800 PE=4 SV=...	[more]
A0A0R0I519_SOYBN	3.0e-22	77.33	Uncharacterized protein OS=Glycine max GN=GLYMA_09G071000 PE=4 SV=1	[more]

BLAST of CmaCh12G013320.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G23070.1	3.3e-20	55.32	Protein of unknown function (DUF300)	[more]
AT1G77220.1	8.1e-11	40.00	Protein of unknown function (DUF300)	[more]
AT4G38360.2	1.4e-10	38.04	Protein of unknown function (DUF300)	[more]

BLAST of CmaCh12G013320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659071475\|ref\|XP_008459995.1\|	1.0e-31	84.27	PREDICTED: transmembrane protein 184C isoform X4 [Cucumis melo]	[more]
gi\|449446843\|ref\|XP_004141180.1\|	2.8e-29	70.37	PREDICTED: transmembrane protein 184C isoform X2 [Cucumis sativus]	[more]
gi\|778665485\|ref\|XP_011648574.1\|	2.8e-29	70.37	PREDICTED: transmembrane protein 184C isoform X1 [Cucumis sativus]	[more]
gi\|659071467\|ref\|XP_008459962.1\|	3.1e-28	69.44	PREDICTED: transmembrane protein 184 homolog DDB_G0279555 isoform X1 [Cucumis me...	[more]
gi\|659071471\|ref\|XP_008459979.1\|	3.1e-28	69.44	PREDICTED: transmembrane protein 184 homolog DDB_G0279555 isoform X2 [Cucumis me...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR005178	Ostalpha/TMEM184C

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh12G013320	CmaCh12G013320	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh12G013320.1	CmaCh12G013320.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G013320.1.CDS.3	CmaCh12G013320.1.CDS.3	CDS
CmaCh12G013320.1.CDS.2	CmaCh12G013320.1.CDS.2	CDS
CmaCh12G013320.1.CDS.1	CmaCh12G013320.1.CDS.1	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G013320.1.five_prime_UTR.1	CmaCh12G013320.1.five_prime_UTR.1	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G013320.1.exon.3	CmaCh12G013320.1.exon.3	exon
CmaCh12G013320.1.exon.2	CmaCh12G013320.1.exon.2	exon
CmaCh12G013320.1.exon.1	CmaCh12G013320.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005178	Organic solute transporter subunit alpha/Transmembrane protein 184	PANTHER	PTHR23423	ORGANIC SOLUTE TRANSPORTER-RELATED	coord: 4..88 score: 8.9
IPR005178	Organic solute transporter subunit alpha/Transmembrane protein 184	PFAM	PF03619	Solute_trans_a	coord: 51..109 score: 1.
None	No IPR available	PANTHER	PTHR23423:SF10	TRANSMEMBRANE PROTEIN 184C	coord: 4..88 score: 8.9
None	No IPR available	PROFILE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..27 score: