CmaCh12G010680.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GCTTCGCCATTGTCCCTCTTCAAGAGAACAGGCGCGTCGGAAAATGGCGTTTACTCGCTGCTTCGTCGGCGGTCAAATGATGTATTTCCGGCGAGGAATAGTGTCGGCGCAGTCACCGTCCGGAGACCCTGCCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCTCTGGTGGCCGTCGGCGCAAATTTTGGCGGCGTAACGAGCTTTCTTCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAAACTCGATGTTGTTTATCCAGTTGGAGGGTACAGCCGGTGCATTGATAACAATGAAGGATTTGGTCAGTAAGTTCTGCAGCATACAATTTTTTTCTTTTTGGATTTTTTTTTTCAGCGTTTAATTAATTAAAAACAATAATTTATTTTCAAATTTGTCAAAATTGTATCAATTTTTACTTAAAATTTTATAGTACAAAATTTATAAAATTAGAAAGAACCACAACATTAAAAAGAAAAACCATTGAAATTTAGTGTGATGTCCCATCTTGGTTCGGGAGGAGAACAAACCACAGTTTATAAGGGTGTGGAAATCTTTCCCTTCCCATAGTAGACGCGTTTTAAAGCCTTGAGAGGAAGCTCGACAGGAAAAGTCCAAAGAGAACAATATATGCTAACGGTGAATCTGGGCTGTTACAAATGGTATCAATCAGACATCAAACGATGTGTCAGCCTTCTCGATGTTCCCTGAAGGGGGTAGACACGAGGCGGTGTGCCAGTAAGGATGCTGAGCCCCAAAGGGGGTAGATTTGGGGGCGGTCCCACATCGATTGGAGGAAAGAAAGAGTGCCAGCGAGGACGCTGGGCCTCGAAGGGGGTGGATTGTGATGTCCCACATTGGTTGAAGAGAAGAACAAACCACCATTTATAAGGGTGTGAAAACCTTCCCCTAGGCGTTTTAAAGCCTTGAAACCTTCCCCCACGCGTTTTAAAGCCTTGAGTTTTAAAGCATTTATAAGGGATTGGAAACATTCCCCAAGGAGTTTTAAAGCCTTGAGTTTGCAATTATAAGGGTGTGAAAACCCAGCTCATAACAACATACCAAAAAGAAGAATGTGATGAGTTCATATTCTCCAGATTCGACTATAAAGCGGATAGTGCCGATGAAAAAAGCATAAGTTACCTCGTTCGTGCTCCCGCTGCCATCTTCTTTGGCTGGCCCCCTATCTCTTAAAGCTTCTATGCGACCCATCTAGCTATTTATTGGTGCCTTTGCTTCCCGCGGCTTCTTTGACTATAGCTCTGCCGCCATCCCTGCTATTACTTATGGGACTAAATCAATAGAAAAAACAACTCGATCAAGTGCGTATACTCCTTCCGCTGGGGTAACTGGGTATTCAAGGGAAAGCCTAAAAGGGATGAAGAAGACAATATCTGAGAATGATGGATTTGGGCCGTTATATTTATGAATTTTGAATTTTTTTTTAATTTTTTAATGGTTAATTTAGGCATTAACCAAACTTAATTTGATTGGACTTTGTTGAGGTAGTAGTAATTTTCAATTTTTTTTTTCACAAAATTAATTAGTAAATTACAAAAATTGAATAAAAGACAAAAATTATAATATTGGTAGTCTAATTTGTTTTAAAAAATATTTGAGGATGAAAATTAAAAAAAAAAAAAAAAAATTGTTAATTTTAAATAAATCTATATAATATTAATTAGTGTTTAAACTACATTTTATGGTTTTATTGTTTTTTTTTCTTCCATCACACTGCCTAAAATTTTCTGTTTAAAGAACATCCAGAGTTTATATACCCAGCAAGATGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGCTGAAAAGTCTGAATTTGAACGATCACTCGACCCTCCACCCTTGACCAGCTCCAACATGGATCGTCGTCGTCGGAGTGTTAATGAGCCACTGGTTGCATTTGGTCCACCAGGTTCGAGCGGAGAGCTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCGTAAGCTTACCTAACTTGTCTACAATTCAACATTATGACAAATCATTTCAATTCTCCACATTCTAACATGCGAGCAAGGGATGGATCAAAATGTTCTAGATTTAGGATCTTTTAGAAACCCCTTGGAAGGTGTTCAACTCTTGTGAAATCTGAGGCACGATCGATCTGAATTTATATAACAGAAAGGAGTCGGGTTATAAGAACTAAGGTTTCGTATAAACCATGATCGGTGAGTTCATGATTTATAAAACTATTAGGAAGTACGAAAAATTAGCAATAGACTTAGTTTATGCAGTCCAAACAAATGCACAACCTCGACTGACAAACTCATGTACCGAACATAAACTTGACTTCTTAAATTCGATTTGCTGTAAACCGAACACCTCCTGAGAGACAAAAACAAGATGAAACTATATGCCTTACAGATAATCAAATCTCATCCTAGGTTCAGGATTTCTATAAACTTCTACATTTTAGGAGAAGTTGAAAATGAAATGAACCTACAGACTTGCCTCATTGAAAGGAAATTTGATTCTAAAAAGGTTTATGTTTTTTCTTTTTTTGGTTGGTTCTTTGGATCACAAAGAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTGATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGATAAGAAATGTCAAATACTACGAACTGGAATTTAAAGTAGAGAGCTCGTCTTTTCGACGTCACAACATAGCGGTCTGTTTTGTTTATCTGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGACAATTGCCAATTCCTTTTGTCTCTCAGCTTGAAGGCTCTAATGTTTACGGCTGTGGGTCGGGTTTGGGGATTTATTTCAAGGATTACTATAAAAGTTTAGAATGAATGTAAAACTCTAATCTTGCCATTTCTAGAACTATATTGGA GCTTCGCCATTGTCCCTCTTCAAGAGAACAGGCGCGTCGGAAAATGGCGTTTACTCGCTGCTTCGTCGGCGGTCAAATGATGTATTTCCGGCGAGGAATAGTGTCGGCGCAGTCACCGTCCGGAGACCCTGCCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCTCTGGTGGCCGTCGGCGCAAATTTTGGCGGCGTAACGAGCTTTCTTCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAAACTCGATGTTGTTTATCCAGTTGGAGGGTACAGCCGGTGCATTGATAACAATGAAGGATTTGAACATCCAGAGTTTATATACCCAGCAAGATGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGCTGAAAAGTCTGAATTTGAACGATCACTCGACCCTCCACCCTTGACCAGCTCCAACATGGATCGTCGTCGTCGGAGTGTTAATGAGCCACTGGTTGCATTTGGTCCACCAGGTTCGAGCGGAGAGCTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTGATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGATAAGAAATGTCAAATACTACGAACTGGAATTTAAAGTAGAGAGCTCGTCTTTTCGACGTCACAACATAGCGGTCTGTTTTGTTTATCTGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGACAATTGCCAATTCCTTTTGTCTCTCAGCTTGAAGGCTCTAATGTTTACGGCTGTGGGTCGGGTTTGGGGATTTATTTCAAGGATTACTATAAAAGTTTAGAATGAATGTAAAACTCTAATCTTGCCATTTCTAGAACTATATTGGA ATGGCGTTTACTCGCTGCTTCGTCGGCGGTCAAATGATGTATTTCCGGCGAGGAATAGTGTCGGCGCAGTCACCGTCCGGAGACCCTGCCGGAAATTCTGCGGCGGAGCAATTCGCACCGCTGGCAGCGACGTTTCGACGGAGGCTAACTGTAGGGATTGGGTCGGCTTCTCTGGTGGCCGTCGGCGCAAATTTTGGCGGCGTAACGAGCTTTCTTCTCGGATTGTCGCCGGAAAACAGTCGGCGTTTGAAACTCGATGTTGTTTATCCAGTTGGAGGGTACAGCCGGTGCATTGATAACAATGAAGGATTTGAACATCCAGAGTTTATATACCCAGCAAGATGGGTAGGAGACCAGAGGTTGCTATATCGAGCAGCTGAAAAGTCTGAATTTGAACGATCACTCGACCCTCCACCCTTGACCAGCTCCAACATGGATCGTCGTCGTCGGAGTGTTAATGAGCCACTGGTTGCATTTGGTCCACCAGGTTCGAGCGGAGAGCTCAACGTTAGCGTCATTGTGTCTCCTGTCTCACCCGATTTTTCAATTGAAGCATTTGGAGGACCAAATGAAGTAGGGGAAGCTGTGATCAGGACAATTACAAGGGCCAGCAAACGCCCTGATCTTAAAGGAACCTTGATACAAACAACTCTCAGAGAGGATTCGATAAGAAATGTCAAATACTACGAACTGGAATTTAAAGTAGAGAGCTCGTCTTTTCGACGTCACAACATAGCGGTCTGTTTTGTTTATCTGGGCAAGTTATACACACTAAATGCCCAGGCACCTGAATCAGAATGGCCAGGTCTAAAATCAGAGATGAGGACAATTGCCAATTCCTTTTGTCTCTCAGCTTGA MAFTRCFVGGQMMYFRRGIVSAQSPSGDPAGNSAAEQFAPLAATFRRRLTVGIGSASLVAVGANFGGVTSFLLGLSPENSRRLKLDVVYPVGGYSRCIDNNEGFEHPEFIYPARWVGDQRLLYRAAEKSEFERSLDPPPLTSSNMDRRRRSVNEPLVAFGPPGSSGELNVSVIVSPVSPDFSIEAFGGPNEVGEAVIRTITRASKRPDLKGTLIQTTLREDSIRNVKYYELEFKVESSSFRRHNIAVCFVYLGKLYTLNAQAPESEWPGLKSEMRTIANSFCLSA
BLAST of CmaCh12G010680.1 vs. Swiss-Prot
Match: PPD7_ARATH (PsbP domain-containing protein 7, chloroplastic OS=Arabidopsis thaliana GN=PPD7 PE=2 SV=1) HSP 1 Score: 354.4 bits (908), Expect = 1.2e-96 Identity = 177/260 (68.08%), Postives = 211/260 (81.15%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. Swiss-Prot
Match: PPL1_ARATH (PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 1.9e-09 Identity = 36/113 (31.86%), Postives = 59/113 (52.21%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. TrEMBL
Match: A0A0A0LGE5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G030040 PE=4 SV=1) HSP 1 Score: 466.1 bits (1198), Expect = 3.1e-128 Identity = 237/285 (83.16%), Postives = 254/285 (89.12%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. TrEMBL
Match: V4TAP0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1) HSP 1 Score: 392.5 bits (1007), Expect = 4.4e-106 Identity = 194/267 (72.66%), Postives = 227/267 (85.02%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. TrEMBL
Match: A0A067EQY2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g022699mg PE=4 SV=1) HSP 1 Score: 387.1 bits (993), Expect = 1.8e-104 Identity = 194/267 (72.66%), Postives = 227/267 (85.02%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. TrEMBL
Match: V4T5F4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002020mg PE=4 SV=1) HSP 1 Score: 385.6 bits (989), Expect = 5.3e-104 Identity = 193/267 (72.28%), Postives = 226/267 (84.64%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. TrEMBL
Match: W9QGT7_9ROSA (PsbP-like protein 1 OS=Morus notabilis GN=L484_013529 PE=4 SV=1) HSP 1 Score: 382.1 bits (980), Expect = 5.9e-103 Identity = 197/291 (67.70%), Postives = 231/291 (79.38%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. TAIR10
Match: AT3G05410.2 (AT3G05410.2 Photosystem II reaction center PsbP family protein) HSP 1 Score: 354.4 bits (908), Expect = 6.7e-98 Identity = 177/260 (68.08%), Postives = 211/260 (81.15%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. TAIR10
Match: AT3G55330.1 (AT3G55330.1 PsbP-like protein 1) HSP 1 Score: 64.7 bits (156), Expect = 1.1e-10 Identity = 36/113 (31.86%), Postives = 59/113 (52.21%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. NCBI nr
Match: gi|659070290|ref|XP_008454371.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 479.2 bits (1232), Expect = 5.1e-132 Identity = 239/285 (83.86%), Postives = 258/285 (90.53%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. NCBI nr
Match: gi|449454159|ref|XP_004144823.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic [Cucumis sativus]) HSP 1 Score: 466.1 bits (1198), Expect = 4.5e-128 Identity = 237/285 (83.16%), Postives = 254/285 (89.12%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. NCBI nr
Match: gi|659070292|ref|XP_008454379.1| (PREDICTED: psbP domain-containing protein 7, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 466.1 bits (1198), Expect = 4.5e-128 Identity = 236/285 (82.81%), Postives = 255/285 (89.47%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. NCBI nr
Match: gi|567881665|ref|XP_006433391.1| (hypothetical protein CICLE_v10002020mg [Citrus clementina]) HSP 1 Score: 392.5 bits (1007), Expect = 6.3e-106 Identity = 194/267 (72.66%), Postives = 227/267 (85.02%), Query Frame = 1
BLAST of CmaCh12G010680.1 vs. NCBI nr
Match: gi|641837315|gb|KDO56270.1| (hypothetical protein CISIN_1g022699mg [Citrus sinensis]) HSP 1 Score: 387.1 bits (993), Expect = 2.6e-104 Identity = 194/267 (72.66%), Postives = 227/267 (85.02%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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