CmaCh12G009950.1 (mRNA) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCCCAACCCCATCAACCTCAAACGAATTTTCCTCAAGAAATGGATCATGGGTCTAAACCCCATCACCTTCTCAAACACAACCATGAACTTCTTAGAGAGAAAAAAGGCCATAAAAGCCTCCTCCGACTTGGCCATGGCTGCAACGAGAAACGGAGCGACTCGGTGGAGTCGAGCCATCATTGCCAAATCCATACAAGCTCCAACTGAGGCCAAGCTTCGAAGGAAGACCACGCTACATAAGATTGGTCGAAAATTGGCTAGGAGGCACACGCACTCGTCAAGGTCGAGGTCCGTAGCAAGATCAGTTGCTAAGAGATTGGTTCAAAAAAGGACCAAAGTTCTAAGGAGTTTGGTTCCTGGGGGAGAGTTTATGGAGGATGAAGCTTTGTTGATTGATGAAGCCCTAGATTACATATCATTTCTTCGAGTTCAAGTTGATGGAATGCGGTTTCTTGCTAATTGCAAATGA ATGCCCAACCCCATCAACCTCAAACGAATTTTCCTCAAGAAATGGATCATGGGTCTAAACCCCATCACCTTCTCAAACACAACCATGAACTTCTTAGAGAGAAAAAAGGCCATAAAAGCCTCCTCCGACTTGGCCATGGCTGCAACGAGAAACGGAGCGACTCGGTGGAGTCGAGCCATCATTGCCAAATCCATACAAGCTCCAACTGAGGCCAAGCTTCGAAGGAAGACCACGCTACATAAGATTGGTCGAAAATTGGCTAGGAGGCACACGCACTCGTCAAGGTCGAGGTCCGTAGCAAGATCAGTTGCTAAGAGATTGGTTCAAAAAAGGACCAAAGTTCTAAGGAGTTTGGTTCCTGGGGGAGAGTTTATGGAGGATGAAGCTTTGTTGATTGATGAAGCCCTAGATTACATATCATTTCTTCGAGTTCAAGTTGATGGAATGCGGTTTCTTGCTAATTGCAAATGA ATGCCCAACCCCATCAACCTCAAACGAATTTTCCTCAAGAAATGGATCATGGGTCTAAACCCCATCACCTTCTCAAACACAACCATGAACTTCTTAGAGAGAAAAAAGGCCATAAAAGCCTCCTCCGACTTGGCCATGGCTGCAACGAGAAACGGAGCGACTCGGTGGAGTCGAGCCATCATTGCCAAATCCATACAAGCTCCAACTGAGGCCAAGCTTCGAAGGAAGACCACGCTACATAAGATTGGTCGAAAATTGGCTAGGAGGCACACGCACTCGTCAAGGTCGAGGTCCGTAGCAAGATCAGTTGCTAAGAGATTGGTTCAAAAAAGGACCAAAGTTCTAAGGAGTTTGGTTCCTGGGGGAGAGTTTATGGAGGATGAAGCTTTGTTGATTGATGAAGCCCTAGATTACATATCATTTCTTCGAGTTCAAGTTGATGGAATGCGGTTTCTTGCTAATTGCAAATGA MPNPINLKRIFLKKWIMGLNPITFSNTTMNFLERKKAIKASSDLAMAATRNGATRWSRAIIAKSIQAPTEAKLRRKTTLHKIGRKLARRHTHSSRSRSVARSVAKRLVQKRTKVLRSLVPGGEFMEDEALLIDEALDYISFLRVQVDGMRFLANCK
BLAST of CmaCh12G009950.1 vs. TrEMBL
Match: A0A0A0LM92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G047790 PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 3.5e-41 Identity = 106/177 (59.89%), Postives = 127/177 (71.75%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. TrEMBL
Match: M5Y9G3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012167mg PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 1.3e-27 Identity = 90/173 (52.02%), Postives = 106/173 (61.27%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. TrEMBL
Match: F6HYP3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0037g01230 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 1.6e-25 Identity = 87/178 (48.88%), Postives = 105/178 (58.99%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. TrEMBL
Match: A0A0D2RBM6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G273100 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 2.7e-25 Identity = 76/152 (50.00%), Postives = 101/152 (66.45%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. TrEMBL
Match: A0A151S9E3_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_026704 PE=4 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 4.6e-25 Identity = 81/174 (46.55%), Postives = 103/174 (59.20%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. TAIR10
Match: AT5G57780.1 (AT5G57780.1 EXPRESSED IN: 18 plant structures) HSP 1 Score: 101.7 bits (252), Expect = 4.3e-22 Identity = 70/155 (45.16%), Postives = 95/155 (61.29%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. TAIR10
Match: AT4G30410.2 (AT4G30410.2 sequence-specific DNA binding transcription factors) HSP 1 Score: 100.9 bits (250), Expect = 7.3e-22 Identity = 70/164 (42.68%), Postives = 97/164 (59.15%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. TAIR10
Match: AT1G09250.1 (AT1G09250.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 50.4 bits (119), Expect = 1.1e-06 Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. TAIR10
Match: AT3G06590.1 (AT3G06590.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein) HSP 1 Score: 49.3 bits (116), Expect = 2.5e-06 Identity = 45/140 (32.14%), Postives = 73/140 (52.14%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. NCBI nr
Match: gi|449462743|ref|XP_004149100.1| (PREDICTED: uncharacterized protein LOC101216909 [Cucumis sativus]) HSP 1 Score: 176.0 bits (445), Expect = 5.1e-41 Identity = 106/177 (59.89%), Postives = 127/177 (71.75%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. NCBI nr
Match: gi|659069899|ref|XP_008452339.1| (PREDICTED: transcription factor bHLH148 [Cucumis melo]) HSP 1 Score: 175.6 bits (444), Expect = 6.6e-41 Identity = 103/175 (58.86%), Postives = 127/175 (72.57%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. NCBI nr
Match: gi|596298638|ref|XP_007227526.1| (hypothetical protein PRUPE_ppa012167mg [Prunus persica]) HSP 1 Score: 131.0 bits (328), Expect = 1.9e-27 Identity = 90/173 (52.02%), Postives = 106/173 (61.27%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. NCBI nr
Match: gi|645233892|ref|XP_008223559.1| (PREDICTED: transcription factor bHLH149 [Prunus mume]) HSP 1 Score: 130.6 bits (327), Expect = 2.4e-27 Identity = 89/173 (51.45%), Postives = 108/173 (62.43%), Query Frame = 1
BLAST of CmaCh12G009950.1 vs. NCBI nr
Match: gi|659086184|ref|XP_008443801.1| (PREDICTED: transcription factor bHLH147 [Cucumis melo]) HSP 1 Score: 125.6 bits (314), Expect = 7.8e-26 Identity = 82/179 (45.81%), Postives = 112/179 (62.57%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
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