CmaCh12G008500.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G008500.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Translation initiation factor IF-3
Location	Cma_Chr12 : 6304687 .. 6309051 (+)
Sequence length	1588

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAAAAAAAGAAAAAGAAAAAAGGTGAAGAAATTGAAGAACTCCCACCCTTCACTGTCTCCTCCATTCCCACAGCTCAAATCTATGGCTGGGCTCACCGGCAGATTTCCTTTCAAACCTCTCTTATCCCATTCCTCCGCCACGCCCACCACCTCTGCCGCCGCGCCCTCCTCCTCCGCCACCGCCATCGCCACACCCATCCGGACCTCAATTTCCCCTCTCCCCCTCTCCTCCTCTAAGTTCAATGCCTTCAGATTCCGCCATCACAACTCCAATTCTCTGCATCTCGTCTTCACAACTTCAACTCGTAGTACTGTAGTTTCTCAATACGGCGGTGCTTCTCGGTCTTCAGGACCGGCGGATTCTAAGCGCTTTGACGATGGTCTTGGTGTCGATATTTCCGCCATTAGGTGTGTGTGCCTTATGCTTGCTAGATTTACATGTATGATGGACGAGTTTTGTTCATTATCATTATTATTTATTTATGATTATTTGGATTTCTTATTTGTTTGGTTGCGTTCATATGGTTGATTTGTTTAGATCGAATACCGTGAGGCTTATCGATGCACAACAGAACATGGTAGGTGGTTTGTTTTAAGCAATTTTCTGTTTGTTTCCTTTTGCTACATTGCAACACATGTAATTTAGGCGTCGTAGTTTGGAAATTTGATCTTCTTGAAATGAATAAATAGGTTGGAATCGTGTCGAAGGTTCAGGCCATTCAAATGGCTGATGACGCTGAACTTGATTTGGTAGGTCTTCTTGTACCGTTTGTTGTTAAAGCAGTTTTCTATTATTTGTCTGGTAGTTCCAAAGAACCTTGCCCCAAACTTTAATGATCTTGTGAGGACTAATTCCATAGTTGTTTTTCGAAAACACGAAATTTGAAATGTGCCTTTTAGCTTAAGCTTGATGTTGATCTTAAATCTTAGTTCCTTTTTCACTTTATGTTTATTTATTGCCTCTTGGGTTTTGGTTTTTATCTTCAATAAACTGTTCTATGTATAAACATGAGCATGAAATTAAAAGCTTATAATAATAGTAATCGAAAAATTATAGTTATATGTTATAGTATGTCCTCTAAACTATAAGAATTGTCGCATGGTGAAGAATTTCATTTATGGGTTGTGCATTAGGCCAATTTTAGTATATAAAATTGTTGTAACGACCTAGACCCACCACTAAGAGATATTGTTCTCTTTGGGCTTTCTCCTCAAGGCTTTAAAACGCGTTTGCTAGAGAAAGGTTTCCACACCCTTATAAAGGGTGTTTTGTTCTCCTCCCCAACCAATGTGGGATATCACAATCCACCCCCCTTTAGGGCTCAACATCCTTGTTTTCTTTCTCCAATCGATGTGGGACCCCTACCAAATCCACCTCCCTTCGAGGCTCAACGTCCTTACTGGCACACTGCCTCGTGTTTACCCCCTTCGAGGAACAACCAACTCGCTGGCACATTGCCTGATGCCTGGCTCTGATACCATTTATAACGGTCCAGGCCCACCACTAGGAGATATTGTTCTCTTTGGGTTTTCCCTTTCGTGCTTCCCCAAAAGGCTTTAAAACGCGTCTGCTAGGGAAAGGTTTCCACACCCTTATAAAGGGCATTTCGTTCTCCTCCCCAACCAATGTGGGATATCACAATTGCACTTTCCTTCCCATGTGATATAGACCAGCAAAGAAACGTCTATTTGTCGACACAAGACTTGGATGAATGCTGAGTAATGCATTGTTATTAAGATATATGAGAAAAACTTCATTCGACCTGTGAGTTCATAACATAATACTCTTTCAGCAATCAACAATTTATAAATCTCATGTCACTATTTGTGTATTGTTCACCTTTTAACTCGGATAAAGAAGGTCGTGGACTAATATTTTTACTGGAATCTAGATATTTGTGTGTACTTTGTGTAGGATAGGATTTAGCCAATTCTTTCTATTTCATGCAGGTTGTATTATCACCTGATGCAGATCCTCCAGTTGTCAGAATAATGGATTACAGGTATGCCATTTAACCAATGATTACATCAATACTTATCAAAAGCATCTTTTGGTGATTTATTTTTCAGTTCGTACTTTAATTTTAATTAAATGTTTCCGAAAAATTAATATATGACAAATGCTAAATAGATGGAAATGTTGTACATTAGAATGGAGAAGGAATGAAACTATGGGAGAATTAGAAGGCCACATTGTTTTTCCTTGTTAATTAACTTCAAATGAACAATATGATGATTGTTATCTTTACACTGGGAGAATTAACTTAAGTTCTTGTTACTTTGACGTTGAGATTTTTTTTTTTCGGTCTCTCGTTTCTCAGTAAATATAGGTATGAACAGCAAAAGAAGAAAAGGGGACAACAGAAGAAAAGTGCTGGTGAATCTCTTTCTTAATAGACTCTGCATATTCTCTTTGGTTCACAATCTTTCAGATTTGAGGAAAGATACTGACAAAGTGTTGTTTTGAATGTTAGCAACTCGCATGGATTTAAAAGAGCTTAAAATGGGGTAACACATTCCTTCATTGCCTTTTCTTTTTGGAGGTCTTCTTTCTTTTCTTTTTCTTCTGTTTAAAGCCACTCGAACTTGTGGCTTCTAAGATCGATAAATAACCTACAAAGAAAAGAGCTATGAGCAGCTTTTGTTCGCTATATCCGAAAAAATTTGGCGAGTATCCTTTTCTCAGTCTCAACCTTCTGGTCGCTATTATTATTGCACAGTTACAACATCGACCAACATGATTACTCTGTCCGTTTGAAAGCTGCAAGGAAGTTTTTGAAAGATGGAGATAAGGTTTCTTTTCTAATCTACCATATCTTTGATTGTCTGTTCATGCATTCAAGTAGATTGTTATAGTTTGTCTGAATCACTTTGAAATCTTTTAACAAAATGTTGTAGGTTAAAGTTATAGTGAACTTGAAAGGTCGTGAGAATGCGTTCAAGAACATAGCAATTGAGCTCATCAGACGTTTTCAGGAAGAGATTGGGGAGGTATTCATTTTCTGTCAATTTTGTGTCATGTTCAATTTCCTCTGTCATCATGGCAATATTAGAGAAAAAAACTGATTGTCCATCACTGTGGTATTGTTACTCAATAAGATGCTCCATATTATTTTAAGTGAAATTTCAGAGTGTAAATTTAGGCACGTGTTTGAACGATATTATGTCTGATCTCATTACCTCATGAAGCACGTTTAGTAGCTCCGGGGAGACTTTTCTTGCGAACAGCTTTTGAAAACTGTTTAATATAACCGTTTTCTTAATGGCTGTGAGATGTCAGCTTAAGCATCCTAGTCTCACGTGGCACTCTACCTAATCTTTTGGTTGATAGTTTATATCTTAACCAATTGAGTTACTCATGTTGGCCCTCGACAATTTATAATATGTAATATTTTAATATCTTAGATAGGTGGCTATATATATATATATATTTTTTTTTTTTTTCATTTTAAGGTCTACTAATGTATCTCGTTTATATTCTTGATGTAAATTTGATGCCATATTTGTGCTTCTTGTTAATACTTTAAACAAACACAATATATCTTCTGTTTATGTCTGATCCAATGACCTGCTCAATATTTTTATTACACACAGCTTGCAACTGAAGAGGCCAAGAACTTAAGAGACAGGAATATGTTTATTGTTCTAGCTCCTAACAAGGCTGTTCTACAGAAGGCTCAAGAACCCCCCAAGGTAAAAGACAATCTTGTAGTTAATGAAGTTTCTGCCAGCGTTTAAGCTCAAGAAGCGTCGGGATTAAGCAAAAAGTAGAATGGTTAGTCACCACAATCTAAATATTCTTCTACCATAGAGAAATATGAGAGTTCTTTGTTTAATGCTTTGTTTAATATAATGCATCATACTTTTGTCCATTCTACTTTTTAGTGGATTGTTTAGAAATCAGACTGTTACTAATTCTTTTGAAAATGATATAGCATTAGTAGCCGAGTATTGTGAGATCTCACATCGGTTGGGGATGAGAACGAAACATTCTTTATAAAGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGAGAAGCTCGAAAGGGAAAACCCCAAAAAGACAATATCTACTAACGATGGACTTGTGCCGTTACCAGCATCATTTTTGGAAAAATTATGCTCCCAGCTTAGTTTTTCAGTGACCCGTGGATGGTGAGAGAGATAATGCAACTCAATTTGACCAACAAATTTGCCGCCAATGACAAATAAGCTCATTGGTTTGGTTTCATTAAATTCATATTGAGAACTGGTTGCCTGATTCAATAGATTTGTTCCAGCCAGTCTAGTTTGATCTCCGTCTATTATGAAGTCGGCTCATTTTTCTAAGTTAGTTTGATTCGTTGCGAG

mRNA sequence

TGAAAAAAAAGAAAAAGAAAAAAGGTGAAGAAATTGAAGAACTCCCACCCTTCACTGTCTCCTCCATTCCCACAGCTCAAATCTATGGCTGGGCTCACCGGCAGATTTCCTTTCAAACCTCTCTTATCCCATTCCTCCGCCACGCCCACCACCTCTGCCGCCGCGCCCTCCTCCTCCGCCACCGCCATCGCCACACCCATCCGGACCTCAATTTCCCCTCTCCCCCTCTCCTCCTCTAAGTTCAATGCCTTCAGATTCCGCCATCACAACTCCAATTCTCTGCATCTCGTCTTCACAACTTCAACTCGTAGTACTGTAGTTTCTCAATACGGCGGTGCTTCTCGGTCTTCAGGACCGGCGGATTCTAAGCGCTTTGACGATGGTCTTGGTGTCGATATTTCCGCCATTAGATCGAATACCGTGAGGCTTATCGATGCACAACAGAACATGGTTGGAATCGTGTCGAAGGTTCAGGCCATTCAAATGGCTGATGACGCTGAACTTGATTTGGTTGTATTATCACCTGATGCAGATCCTCCAGTTGTCAGAATAATGGATTACAGTAAATATAGGTATGAACAGCAAAAGAAGAAAAGGGGACAACAGAAGAAAAGTGCTGCAACTCGCATGGATTTAAAAGAGCTTAAAATGGGTTACAACATCGACCAACATGATTACTCTGTCCGTTTGAAAGCTGCAAGGAAGTTTTTGAAAGATGGAGATAAGGTTAAAGTTATAGTGAACTTGAAAGGTCGTGAGAATGCGTTCAAGAACATAGCAATTGAGCTCATCAGACGTTTTCAGGAAGAGATTGGGGAGCTTGCAACTGAAGAGGCCAAGAACTTAAGAGACAGGAATATGTTTATTGTTCTAGCTCCTAACAAGGCTGTTCTACAGAAGGCTCAAGAACCCCCCAAGGTAAAAGACAATCTTGTAGTTAATGAAGTTTCTGCCAGCGTTTAAGCTCAAGAAGCGTCGGGATTAAGCAAAAAGTAGAATGGTTAGTCACCACAATCTAAATATTCTTCTACCATAGAGAAATATGAGAGTTCTTTGTTTAATGCTTTGTTTAATATAATGCATCATACTTTTGTCCATTCTACTTTTTAGTGGATTGTTTAGAAATCAGACTGTTACTAATTCTTTTGAAAATGATATAGCATTAGTAGCCGAGTATTGTGAGATCTCACATCGGTTGGGGATGAGAACGAAACATTCTTTATAAAGGTGTGGAAACCTCTCCCTAGCAGACGCGTTTTAAAAACCTTGAGGAGAAGCTCGAAAGGGAAAACCCCAAAAAGACAATATCTACTAACGATGGACTTGTGCCGTTACCAGCATCATTTTTGGAAAAATTATGCTCCCAGCTTAGTTTTTCAGTGACCCGTGGATGGTGAGAGAGATAATGCAACTCAATTTGACCAACAAATTTGCCGCCAATGACAAATAAGCTCATTGGTTTGGTTTCATTAAATTCATATTGAGAACTGGTTGCCTGATTCAATAGATTTGTTCCAGCCAGTCTAGTTTGATCTCCGTCTATTATGAAGTCGGCTCATTTTTCTAAGTTAGTTTGATTCGTTGCGAG

Coding sequence (CDS)

ATGGCTGGGCTCACCGGCAGATTTCCTTTCAAACCTCTCTTATCCCATTCCTCCGCCACGCCCACCACCTCTGCCGCCGCGCCCTCCTCCTCCGCCACCGCCATCGCCACACCCATCCGGACCTCAATTTCCCCTCTCCCCCTCTCCTCCTCTAAGTTCAATGCCTTCAGATTCCGCCATCACAACTCCAATTCTCTGCATCTCGTCTTCACAACTTCAACTCGTAGTACTGTAGTTTCTCAATACGGCGGTGCTTCTCGGTCTTCAGGACCGGCGGATTCTAAGCGCTTTGACGATGGTCTTGGTGTCGATATTTCCGCCATTAGATCGAATACCGTGAGGCTTATCGATGCACAACAGAACATGGTTGGAATCGTGTCGAAGGTTCAGGCCATTCAAATGGCTGATGACGCTGAACTTGATTTGGTTGTATTATCACCTGATGCAGATCCTCCAGTTGTCAGAATAATGGATTACAGTAAATATAGGTATGAACAGCAAAAGAAGAAAAGGGGACAACAGAAGAAAAGTGCTGCAACTCGCATGGATTTAAAAGAGCTTAAAATGGGTTACAACATCGACCAACATGATTACTCTGTCCGTTTGAAAGCTGCAAGGAAGTTTTTGAAAGATGGAGATAAGGTTAAAGTTATAGTGAACTTGAAAGGTCGTGAGAATGCGTTCAAGAACATAGCAATTGAGCTCATCAGACGTTTTCAGGAAGAGATTGGGGAGCTTGCAACTGAAGAGGCCAAGAACTTAAGAGACAGGAATATGTTTATTGTTCTAGCTCCTAACAAGGCTGTTCTACAGAAGGCTCAAGAACCCCCCAAGGTAAAAGACAATCTTGTAGTTAATGAAGTTTCTGCCAGCGTTTAA

Protein sequence

MAGLTGRFPFKPLLSHSSATPTTSAAAPSSSATAIATPIRTSISPLPLSSSKFNAFRFRHHNSNSLHLVFTTSTRSTVVSQYGGASRSSGPADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV

Homology

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BLAST of CmaCh12G008500.1 vs. Swiss-Prot
Match: IF3_MICAN (Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) GN=infC PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.0e-31
Identity = 71/161 (44.10%), Postives = 111/161 (68.94%), Query Frame = 1


Query: 108 IRSNTVRLIDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQ 167
           IR   +R+ID+  + +GI++  +A+++A++ ELDLV++S  A PPV RIMDY KY++EQ+
Sbjct: 18  IRFPEIRVIDSDGSQLGIITPAEALRVAEEKELDLVLVSETASPPVCRIMDYGKYKFEQE 77

Query: 168 KKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENA 227
           KK R  +KK      D+KE+KM Y ID+HDY+VR+  A++FLK GDKVK  +  +GRE  
Sbjct: 78  KKAREAKKKQHTA--DIKEVKMRYKIDEHDYNVRVNQAQRFLKAGDKVKATITFRGREIQ 137

Query: 228 FKNIAIELIRRFQEEIGELA-TEEAKNLRDRNMFIVLAPNK 268
             N+A EL+ R  +++ ++A  ++A     RNM ++L+P K
Sbjct: 138 HSNLAEELLARMAKDLQDVAEVQQAPKKEGRNMMMMLSPKK 176

[Close]

BLAST of CmaCh12G008500.1 vs. Swiss-Prot
Match: IF3_CALS4 (Translation initiation factor IF-3 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=infC PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.0e-31
Identity = 73/161 (45.34%), Postives = 111/161 (68.94%), Query Frame = 1


Query: 108 IRSNTVRLIDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQ 167
           IR   VRLID     +GI+S  +A ++A +  LDLV + P+A+PPV ++MD+ KYRYE  
Sbjct: 21  IRDKEVRLIDQDGKQIGIMSAKEAYKIAQERHLDLVKIVPNANPPVCKLMDFGKYRYELS 80

Query: 168 KKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENA 227
           K+++  +KK     +++KE++M  NI+ HD+ V+LK+A KFLKDGDKVKV +  +GRE A
Sbjct: 81  KREKEAKKKQKI--INVKEIRMSPNIEDHDFGVKLKSAIKFLKDGDKVKVTIRFRGREAA 140

Query: 228 FKNIAIELIRRFQEEIGELA-TEEAKNLRDRNMFIVLAPNK 268
             ++A +L++RF EE+ E    E+A ++  RNM +V+AP K
Sbjct: 141 HTSLAEDLLKRFAEELREYGNVEKAPSMDGRNMMMVIAPKK 179

[Close]

BLAST of CmaCh12G008500.1 vs. Swiss-Prot
Match: IF3_ANAVT (Translation initiation factor IF-3 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=infC PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.8e-31
Identity = 75/163 (46.01%), Postives = 111/163 (68.10%), Query Frame = 1


Query: 108 IRSNTVRLIDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQ 167
           IR   +R+ID   + +GI++  +A+Q+A++ ELDLV+LS  ADPPV RIMDY KY++EQ+
Sbjct: 19  IRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGKYKFEQE 78

Query: 168 KKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENA 227
           KK R  +KK      D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK  V  +GRE  
Sbjct: 79  KKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQ 138

Query: 228 FKNIAIELIRRFQ---EEIGELATEEAKNLRDRNMFIVLAPNK 268
             ++A +L++R     E  GE+  ++A     RNM ++++P K
Sbjct: 139 HSDLAEDLLKRMATDLEPFGEV--QQAPKKEGRNMMMLISPKK 177

[Close]

BLAST of CmaCh12G008500.1 vs. Swiss-Prot
Match: IF3_NOSS1 (Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=infC PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 6.8e-31
Identity = 75/163 (46.01%), Postives = 111/163 (68.10%), Query Frame = 1


Query: 108 IRSNTVRLIDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQ 167
           IR   +R+ID   + +GI++  +A+Q+A++ ELDLV+LS  ADPPV RIMDY KY++EQ+
Sbjct: 19  IRFPKIRVIDTDGSQLGILTPQEALQLAEEKELDLVLLSDKADPPVCRIMDYGKYKFEQE 78

Query: 168 KKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENA 227
           KK R  +KK      D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK  V  +GRE  
Sbjct: 79  KKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQ 138

Query: 228 FKNIAIELIRRFQ---EEIGELATEEAKNLRDRNMFIVLAPNK 268
             ++A +L++R     E  GE+  ++A     RNM ++++P K
Sbjct: 139 HSDLAEDLLKRMATDLEPFGEV--QQAPKKEGRNMMMLISPKK 177

[Close]

BLAST of CmaCh12G008500.1 vs. Swiss-Prot
Match: IF3_NOSP7 (Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=infC PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.0e-30
Identity = 75/163 (46.01%), Postives = 109/163 (66.87%), Query Frame = 1


Query: 108 IRSNTVRLIDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQ 167
           IR   +R+ID     +GI+   +A+Q+A++ ELDLV++S  ADPPV RIMDY KY++EQ+
Sbjct: 19  IRFPKIRVIDTDGAQLGIMPPQEALQLAEEKELDLVLISDKADPPVCRIMDYGKYKFEQE 78

Query: 168 KKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENA 227
           KK R  +KK      D+KE+KM Y I++HDY+VR+K A +FLKDGDKVK  V  +GRE  
Sbjct: 79  KKAREARKKQHTA--DVKEVKMRYKIEEHDYNVRVKQAERFLKDGDKVKATVMFRGREIQ 138

Query: 228 FKNIAIELIRRFQ---EEIGELATEEAKNLRDRNMFIVLAPNK 268
             ++A +L++R     E  GEL  ++A     RNM ++++P K
Sbjct: 139 HSDLAEDLLKRMATDLEPFGEL--QQAPKKEGRNMMMLISPKK 177

[Close]

BLAST of CmaCh12G008500.1 vs. TrEMBL
Match: A0A0A0LH34_CUCSA (Translation initiation factor IF-3 OS=Cucumis sativus GN=Csa_2G036070 PE=3 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 1.0e-110
Identity = 226/299 (75.59%), Postives = 254/299 (84.95%), Query Frame = 1


Query: 1   MAGLTGRFPFKPLLSHSSATPTT---SAAAPSSSATAIATPIRTSISPLPLSSSKFNAFR 60
           MAGL+G FPFK LLS SSA  TT   S+AAP  ++++  TP RTS   LP+SSS  NAF+
Sbjct: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60

Query: 61  FRHHNSNSLHLVFTTST----RSTVVSQYGGASRSSGPADSKRFDDGLGVDISAIRSNTV 120
           FR H SNSL L+F++      R++V ++ GGA RSSGP DSKR +D +G+DISAI+S  V
Sbjct: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV 120

Query: 121 RLIDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQ 180
           RLIDA+QNMVG+VSK QAIQMA+DAELDLVV+SPDADPPVVRIMDY+KYRYE QKKKRGQ
Sbjct: 121 RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ 180

Query: 181 QKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAI 240
           QKKSAATRMDLKELKMGYNIDQHDYSVRLKAA+KFLKDGDKVKVIVNLKGREN F+NIAI
Sbjct: 181 QKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAI 240

Query: 241 ELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 293
           ELIRRFQEE+GELATEEAKN RDRN+FIVL PNKAVLQKAQEPPK KD   VN VSASV
Sbjct: 241 ELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 299

[Close]

BLAST of CmaCh12G008500.1 vs. TrEMBL
Match: B9T4Q8_RICCO (Translation initiation factor IF-3 OS=Ricinus communis GN=RCOM_0443750 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.1e-85
Identity = 187/295 (63.39%), Postives = 215/295 (72.88%), Query Frame = 1


Query: 1   MAGLTGRFPFKPLLSH-SSATPTTSAAAPSSSATAIATPIRTSISPLPLSSSKFNAFRFR 60
           MAG+T  FPF PLL+  ++AT TT                        LSS +   F  R
Sbjct: 1   MAGITTSFPFNPLLTQLTTATKTTQFI---------------------LSSLESKLFGLR 60

Query: 61  HHNSNSLHLVFTTSTRSTVVSQYGGASRSSGPADSKRFD--DGLGVDISAIRSNTVRLID 120
            H S    L+  +       +++GG  RSSG   S++ D  D   +DIS IRS TVRLID
Sbjct: 61  FHCSKPDSLISLSRASVVTSARFGGGFRSSGDRRSRQSDSEDDHALDISTIRSATVRLID 120

Query: 121 AQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKS 180
            QQNMVG+V K +AIQMA++A LDLV+LSPDADPPVVRIMDY+KYRYE QKKK+GQQKKS
Sbjct: 121 EQQNMVGVVPKSEAIQMAENAALDLVILSPDADPPVVRIMDYNKYRYELQKKKKGQQKKS 180

Query: 181 AATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIR 240
           AATRMDLKELKMGYNIDQHDY VRL+AARKFLKDGDKVKVIVNLKGREN F+NIAIELIR
Sbjct: 181 AATRMDLKELKMGYNIDQHDYDVRLRAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIR 240

Query: 241 RFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 293
           RFQ ++GELATEE KN RDRN+FI LAPNKA+LQK+QEPPK +D   VNEVSA V
Sbjct: 241 RFQNDVGELATEETKNFRDRNIFITLAPNKAILQKSQEPPKKRDKSAVNEVSAGV 274

[Close]

BLAST of CmaCh12G008500.1 vs. TrEMBL
Match: A0A061GWG8_THECC (Translation initiation factor IF-3 OS=Theobroma cacao GN=TCM_038405 PE=3 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.8e-83
Identity = 186/297 (62.63%), Postives = 217/297 (73.06%), Query Frame = 1


Query: 1   MAGLTGRFPFKPLLSHSSATPTTSAAAPSSSATAIATPIRTSISPLPLSSSKFNAFRFRH 60
           MAG+T  FPFKPL       PT                  T   PL  SS +   F    
Sbjct: 1   MAGITTSFPFKPL-------PTRP----------------TKTIPLLRSSLESKLFGLHF 60

Query: 61  HNSNSLHLVFTTSTRS-----TVVSQYGGASRSSGPADSKRFDDGLGVDISAIRSNTVRL 120
            N+NS    F++S+ S      + ++YGG SR SGP  S+R D+   +DIS IRS++VRL
Sbjct: 61  RNANS----FSSSSSSLHCSAAITARYGGDSRFSGPGRSRRNDEDQALDISGIRSDSVRL 120

Query: 121 IDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQK 180
           ID QQNMVGIVSK QA++MA+DAELDLV+LSPDADPPVVRIMDY+KY+YEQQKKK+ QQK
Sbjct: 121 IDEQQNMVGIVSKSQAVEMAEDAELDLVILSPDADPPVVRIMDYNKYKYEQQKKKKLQQK 180

Query: 181 KSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIEL 240
           K+   RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGREN F+N+A+EL
Sbjct: 181 KT--NRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENEFRNMAMEL 240

Query: 241 IRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 293
           IRRFQ ++GELA EE+KN RDRN+FIVL PNKA+LQKAQ+P K KD    NEVSA V
Sbjct: 241 IRRFQNDVGELAAEESKNFRDRNIFIVLVPNKALLQKAQDPGKKKDKPTKNEVSAGV 268

[Close]

BLAST of CmaCh12G008500.1 vs. TrEMBL
Match: A0A061GNM3_THECC (Translation initiation factor IF-3 OS=Theobroma cacao GN=TCM_038405 PE=3 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 4.5e-82
Identity = 186/298 (62.42%), Postives = 217/298 (72.82%), Query Frame = 1


Query: 1   MAGLTGRFPFKPLLSHSSATPTTSAAAPSSSATAIATPIRTSISPLPLSSSKFNAFRFRH 60
           MAG+T  FPFKPL       PT                  T   PL  SS +   F    
Sbjct: 1   MAGITTSFPFKPL-------PTRP----------------TKTIPLLRSSLESKLFGLHF 60

Query: 61  HNSNSLHLVFTTSTRS-----TVVSQYGGASRSSGPADSKRFDDGLGVDISAIRSNTVRL 120
            N+NS    F++S+ S      + ++YGG SR SGP  S+R D+   +DIS IRS++VRL
Sbjct: 61  RNANS----FSSSSSSLHCSAAITARYGGDSRFSGPGRSRRNDEDQALDISGIRSDSVRL 120

Query: 121 IDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQK 180
           ID QQNMVGIVSK QA++MA+DAELDLV+LSPDADPPVVRIMDY+KY+YEQQKKK+ QQK
Sbjct: 121 IDEQQNMVGIVSKSQAVEMAEDAELDLVILSPDADPPVVRIMDYNKYKYEQQKKKKLQQK 180

Query: 181 KSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDK-VKVIVNLKGRENAFKNIAIE 240
           K+   RMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDK VKVIVNLKGREN F+N+A+E
Sbjct: 181 KT--NRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVVKVIVNLKGRENEFRNMAME 240

Query: 241 LIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 293
           LIRRFQ ++GELA EE+KN RDRN+FIVL PNKA+LQKAQ+P K KD    NEVSA V
Sbjct: 241 LIRRFQNDVGELAAEESKNFRDRNIFIVLVPNKALLQKAQDPGKKKDKPTKNEVSAGV 269

[Close]

BLAST of CmaCh12G008500.1 vs. TrEMBL
Match: M5W2Z1_PRUPE (Translation initiation factor IF-3 OS=Prunus persica GN=PRUPE_ppa009761mg PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 5.9e-82
Identity = 179/278 (64.39%), Postives = 221/278 (79.50%), Query Frame = 1


Query: 22  TTSAAAPSSSATAIATPIRTSISPLPLSSSKFNAFRFRHHNSNSLHLVFTTSTRSTVVSQ 81
           TTS A   S A    T  +T+ SPL LSS +   F  R +NS+S     +++  S + ++
Sbjct: 5   TTSCA---SKAMLYRTTYKTTPSPLSLSSVESKLFGLRFNNSSSCFGCLSSTVSSPITAR 64

Query: 82  YGGASRSSG--PADSKRFD--DGLGVDISAIRSNTVRLIDAQQNMVGIVSKVQAIQMADD 141
           +GG  R  G  P  S++ D  +   +D+S+IRS+TVRLIDA+QNMVG+VSK +AI++ADD
Sbjct: 65  FGGGPRFPGNDPRRSRKSDSDEDEALDVSSIRSDTVRLIDAKQNMVGVVSKREAIRLADD 124

Query: 142 AELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHD 201
           A+LDLV+LSP+ADPPV+RIMDY+KYRYEQQKKKRGQQKKSAA+RMDLKELKMGYNIDQHD
Sbjct: 125 ADLDLVILSPEADPPVLRIMDYNKYRYEQQKKKRGQQKKSAASRMDLKELKMGYNIDQHD 184

Query: 202 YSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDR 261
           YSVRL+AA+KFLKDGDKVKVIV+LKGREN F+NIAI LI+RFQ ++GELATEEAK+  D+
Sbjct: 185 YSVRLRAAQKFLKDGDKVKVIVHLKGRENDFRNIAIALIKRFQNDVGELATEEAKSFSDK 244

Query: 262 NMFIVLAPNKAVLQKAQE-PPKVKDNL--VVNEVSASV 293
           NMFIVL PNKA+LQKAQE PPK K+N    VNE+SA V
Sbjct: 245 NMFIVLVPNKAILQKAQEPPPKKKENSAPAVNEISAGV 279

[Close]

BLAST of CmaCh12G008500.1 vs. TAIR10
Match: AT2G24060.1 (AT2G24060.1 Translation initiation factor 3 protein)

HSP 1 Score: 278.1 bits (710), Expect = 6.2e-75
Identity = 149/212 (70.28%), Postives = 181/212 (85.38%), Query Frame = 1


Query: 81  QYGGASRSSGPADSKRFDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKVQAIQMADDAEL 140
           ++ G +R   P +++  D+ L  DIS+IRS TVRLID QQNM+G+VSK +A++MADDAEL
Sbjct: 71  RFSGDNRRGRPKEAE-IDEAL--DISSIRSATVRLIDGQQNMLGLVSKDEAVRMADDAEL 130

Query: 141 DLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSV 200
           DLV+LSPDADPPVV++MDYSKYRYEQQK+K+ QQKK+  TRMDLKELKMGYNIDQHDYSV
Sbjct: 131 DLVILSPDADPPVVKMMDYSKYRYEQQKRKKDQQKKT--TRMDLKELKMGYNIDQHDYSV 190

Query: 201 RLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMF 260
           RL+AA+KFL+DGDKVKVIV++KGREN F+NIAIEL+RRFQ EIGELATEE+KN RDRNMF
Sbjct: 191 RLRAAQKFLQDGDKVKVIVSMKGRENEFRNIAIELLRRFQTEIGELATEESKNFRDRNMF 250

Query: 261 IVLAPNKAVLQKAQEPP-KVKDNLVVNEVSAS 292
           I+L PNK +++K QEPP + K     NE SAS
Sbjct: 251 IILVPNKEMIRKPQEPPTRKKKKTAENEASAS 277

[Close]

BLAST of CmaCh12G008500.1 vs. TAIR10
Match: AT4G30690.1 (AT4G30690.1 Translation initiation factor 3 protein)

HSP 1 Score: 274.2 bits (700), Expect = 9.0e-74
Identity = 163/296 (55.07%), Postives = 205/296 (69.26%), Query Frame = 1


Query: 1   MAGLTGRFPFKPLLSHSSATPTTSAAAPSSSATAIATPIRTSISPLPLSSSKFNAFRFRH 60
           MAG+T    F  +L+ ++ T              ++ P+++ +  L L   +F+      
Sbjct: 1   MAGITSTVGFNAILAGATKT--------------VSHPVKSKLFGLRLCVPEFSIVSLSP 60

Query: 61  HNSNSLHLVFTTSTRSTVVSQYGGASRSSGPAD----SKRFDDGLGVDISAIRSNTVRLI 120
           ++      +       T     GG   S  P D     K  +D   +DISAIRS TVRLI
Sbjct: 61  YHHRRCPAI-------TCRYGGGGGGGSRFPGDRRGRQKESEDDDSLDISAIRSATVRLI 120

Query: 121 DAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKK 180
           D QQNM+G+VSK +A++ A+DAELDLV+LSPDADPPVVR+MDYSKYRYEQQK+K+ QQKK
Sbjct: 121 DDQQNMIGLVSKEEAVRRAEDAELDLVILSPDADPPVVRMMDYSKYRYEQQKRKKEQQKK 180

Query: 181 SAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELI 240
           +  TRMDLKELKMGYNIDQHDYSVR++AARKFL+DGDKVKVIVN+KGREN F+NIAIEL+
Sbjct: 181 T--TRMDLKELKMGYNIDQHDYSVRMRAARKFLQDGDKVKVIVNMKGRENEFRNIAIELL 240

Query: 241 RRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQE-PPKVKDNLVVNEVSAS 292
           RRFQ EIGEL TEE+KN RDRN+FIVL PNK V++K QE PPK K     ++VSA+
Sbjct: 241 RRFQTEIGELGTEESKNFRDRNLFIVLVPNKEVIRKVQEPPPKKKKKPADDKVSAA 273

[Close]

BLAST of CmaCh12G008500.1 vs. TAIR10
Match: AT1G34360.1 (AT1G34360.1 translation initiation factor 3 (IF-3) family protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.9e-07
Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 1


Query: 108 IRSNTVRLIDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQ 167
           I  + VRL+  + + V  VS  +A++ A + + DLV +  DA PPV +I+ YS   Y++ 
Sbjct: 90  ITGDYVRLVSEEGHCV--VSLREALRRAKELQCDLVEVQRDAKPPVCKIVKYSLELYKKA 149

Query: 168 K--KKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVI-VNLKGR 227
           K  K+R + K++ A R D+KE++    I+  D   +   A K ++ G +VK + V  K +
Sbjct: 150 KVGKERAKAKRAEAIRPDIKEIRFTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDK 209

Query: 228 ENAFK-NIAIELIRRFQEEIGELATE 250
               +    +EL+ RF   IG+   E
Sbjct: 210 HKELEPEKLLELLFRFTCFIGDALVE 233

[Close]

BLAST of CmaCh12G008500.1 vs. NCBI nr
Match: gi|659069971|ref|XP_008452687.1| (PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis melo])

HSP 1 Score: 408.3 bits (1048), Expect = 1.1e-110
Identity = 226/297 (76.09%), Postives = 252/297 (84.85%), Query Frame = 1


Query: 1   MAGLTGRFPFKPLLSHSSATPTTSAAAPSSSATAIATPIRTSISPLPLSSS-KFNAFRFR 60
           MAGL+G FPFK LLS SSA  TT++ A + ++++  TP RTS   LP+SSS   NAF+ R
Sbjct: 1   MAGLSGSFPFKSLLSQSSAASTTTSPAAAPTSSSSTTPFRTSTPSLPISSSFNSNAFKLR 60

Query: 61  HHNSNSLHLVFT----TSTRSTVVSQYGGASRSSGPADSKRFDDGLGVDISAIRSNTVRL 120
            H SNSL LVF+    +  R++V ++ GGA RSSGP DSKR +D  G+D+SAIRSN VRL
Sbjct: 61  LHKSNSLRLVFSFPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEFGLDVSAIRSNNVRL 120

Query: 121 IDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQK 180
           IDAQQNMVG+VSK QAIQMA+DAELDLVVLSPDADPPVVRIMDY+KYRYE QKKKRGQQK
Sbjct: 121 IDAQQNMVGVVSKAQAIQMAEDAELDLVVLSPDADPPVVRIMDYNKYRYELQKKKRGQQK 180

Query: 181 KSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIEL 240
           KSAATRMDLKELKMGYNIDQHDYSVRLKAA+KFLKDGDKVKVIVNLKGREN F+NIAIEL
Sbjct: 181 KSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAIEL 240

Query: 241 IRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 293
           IRRFQEE+GELATEEAKN RDRN+FIVL PNKAVLQKAQEPPK KD   VNEVSA V
Sbjct: 241 IRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNEVSAGV 297

[Close]

BLAST of CmaCh12G008500.1 vs. NCBI nr
Match: gi|449453964|ref|XP_004144726.1| (PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis sativus])

HSP 1 Score: 407.9 bits (1047), Expect = 1.5e-110
Identity = 226/299 (75.59%), Postives = 254/299 (84.95%), Query Frame = 1


Query: 1   MAGLTGRFPFKPLLSHSSATPTT---SAAAPSSSATAIATPIRTSISPLPLSSSKFNAFR 60
           MAGL+G FPFK LLS SSA  TT   S+AAP  ++++  TP RTS   LP+SSS  NAF+
Sbjct: 1   MAGLSGSFPFKSLLSQSSAAATTTSSSSAAPPPTSSSSTTPFRTSFPSLPISSSNSNAFK 60

Query: 61  FRHHNSNSLHLVFTTST----RSTVVSQYGGASRSSGPADSKRFDDGLGVDISAIRSNTV 120
           FR H SNSL L+F++      R++V ++ GGA RSSGP DSKR +D +G+DISAI+S  V
Sbjct: 61  FRLHKSNSLRLLFSSPVSSPIRTSVFARLGGAPRSSGPPDSKRSNDEIGLDISAIKSINV 120

Query: 121 RLIDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQ 180
           RLIDA+QNMVG+VSK QAIQMA+DAELDLVV+SPDADPPVVRIMDY+KYRYE QKKKRGQ
Sbjct: 121 RLIDAEQNMVGVVSKAQAIQMAEDAELDLVVVSPDADPPVVRIMDYNKYRYELQKKKRGQ 180

Query: 181 QKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAI 240
           QKKSAATRMDLKELKMGYNIDQHDYSVRLKAA+KFLKDGDKVKVIVNLKGREN F+NIAI
Sbjct: 181 QKKSAATRMDLKELKMGYNIDQHDYSVRLKAAKKFLKDGDKVKVIVNLKGRENEFRNIAI 240

Query: 241 ELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 293
           ELIRRFQEE+GELATEEAKN RDRN+FIVL PNKAVLQKAQEPPK KD   VN VSASV
Sbjct: 241 ELIRRFQEEVGELATEEAKNFRDRNIFIVLVPNKAVLQKAQEPPKKKDKPAVNGVSASV 299

[Close]

BLAST of CmaCh12G008500.1 vs. NCBI nr
Match: gi|255585038|ref|XP_002533227.1| (PREDICTED: translation initiation factor IF-3 [Ricinus communis])

HSP 1 Score: 324.7 bits (831), Expect = 1.6e-85
Identity = 187/295 (63.39%), Postives = 215/295 (72.88%), Query Frame = 1


Query: 1   MAGLTGRFPFKPLLSH-SSATPTTSAAAPSSSATAIATPIRTSISPLPLSSSKFNAFRFR 60
           MAG+T  FPF PLL+  ++AT TT                        LSS +   F  R
Sbjct: 1   MAGITTSFPFNPLLTQLTTATKTTQFI---------------------LSSLESKLFGLR 60

Query: 61  HHNSNSLHLVFTTSTRSTVVSQYGGASRSSGPADSKRFD--DGLGVDISAIRSNTVRLID 120
            H S    L+  +       +++GG  RSSG   S++ D  D   +DIS IRS TVRLID
Sbjct: 61  FHCSKPDSLISLSRASVVTSARFGGGFRSSGDRRSRQSDSEDDHALDISTIRSATVRLID 120

Query: 121 AQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSKYRYEQQKKKRGQQKKS 180
            QQNMVG+V K +AIQMA++A LDLV+LSPDADPPVVRIMDY+KYRYE QKKK+GQQKKS
Sbjct: 121 EQQNMVGVVPKSEAIQMAENAALDLVILSPDADPPVVRIMDYNKYRYELQKKKKGQQKKS 180

Query: 181 AATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNLKGRENAFKNIAIELIR 240
           AATRMDLKELKMGYNIDQHDY VRL+AARKFLKDGDKVKVIVNLKGREN F+NIAIELIR
Sbjct: 181 AATRMDLKELKMGYNIDQHDYDVRLRAARKFLKDGDKVKVIVNLKGRENEFRNIAIELIR 240

Query: 241 RFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKDNLVVNEVSASV 293
           RFQ ++GELATEE KN RDRN+FI LAPNKA+LQK+QEPPK +D   VNEVSA V
Sbjct: 241 RFQNDVGELATEETKNFRDRNIFITLAPNKAILQKSQEPPKKRDKSAVNEVSAGV 274

[Close]

BLAST of CmaCh12G008500.1 vs. NCBI nr
Match: gi|1009109779|ref|XP_015892083.1| (PREDICTED: translation initiation factor IF-3-like [Ziziphus jujuba])

HSP 1 Score: 322.0 bits (824), Expect = 1.1e-84
Identity = 184/264 (69.70%), Postives = 209/264 (79.17%), Query Frame = 1


Query: 37  TPIRTSISPLPLSSS-KFNAFRFRHHNSN---SLHLVFTTSTRSTVV-SQYGGASRSSGP 96
           T   T+ S LP+SSS     F  R  NS+   S  LV+ +S+ S  + S+YGG SR SGP
Sbjct: 27  TSTNTTPSLLPISSSFDSKLFGLRLQNSSLAKSSSLVYASSSFSAAITSRYGGGSRYSGP 86

Query: 97  ADSKR---FDDGLGVDISAIRSNTVRLIDAQQNMVGIVSKVQAIQMADDAELDLVVLSPD 156
               R    DD   +DIS IRS++VRLID  QNMVGIVSK +A+++A+DAELDLV+LSPD
Sbjct: 87  DKRSRQSYSDDDQALDISTIRSDSVRLIDENQNMVGIVSKSEAVRIAEDAELDLVILSPD 146

Query: 157 ADPPVVRIMDYSKYRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKF 216
           ADPPVV+IMDY+KYRYEQQKKKR QQKKSAA+RM LKELKMGYNIDQHDYSVRLKAARKF
Sbjct: 147 ADPPVVKIMDYNKYRYEQQKKKRDQQKKSAASRMALKELKMGYNIDQHDYSVRLKAARKF 206

Query: 217 LKDGDKVKVIVNLKGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKA 276
           LKDGDKVKVIVNLKGREN F+NIAIELIRRFQ E+GELATEEAKN RDRN+FI+L PN+ 
Sbjct: 207 LKDGDKVKVIVNLKGRENEFRNIAIELIRRFQNEVGELATEEAKNFRDRNIFIILVPNRT 266

Query: 277 VLQKAQEPPKVKDNLVVNEVSASV 293
           VLQK QEPP  KD   VNEVSA V
Sbjct: 267 VLQKGQEPPAKKDKSAVNEVSAGV 290

[Close]

BLAST of CmaCh12G008500.1 vs. NCBI nr
Match: gi|747065489|ref|XP_011079383.1| (PREDICTED: translation initiation factor IF-3, chloroplastic [Sesamum indicum])

HSP 1 Score: 319.7 bits (818), Expect = 5.3e-84
Identity = 178/251 (70.92%), Postives = 200/251 (79.68%), Query Frame = 1


Query: 45  PLPLSSSKFN--AFRFRHHNSNSLHLVFTTSTRSTVVSQYGGASRSSGPADSK-RFDDGL 104
           P PL    FN  +F FR H   +      ++T +T+ ++YGG     G    K +  D  
Sbjct: 17  PKPLKPFAFNLHSFSFRIHRPTTTRCPSISTTFTTISARYGGGGGGGGGGFRKSQPSDDE 76

Query: 105 GVDISAIRSNTVRLIDAQQNMVGIVSKVQAIQMADDAELDLVVLSPDADPPVVRIMDYSK 164
            +DIS+IRS+TVRLID QQ MVGIVSK QA +MA+DAELDLV+LSPDADPPVVRIMDY+K
Sbjct: 77  ALDISSIRSDTVRLIDEQQKMVGIVSKAQAFKMAEDAELDLVILSPDADPPVVRIMDYNK 136

Query: 165 YRYEQQKKKRGQQKKSAATRMDLKELKMGYNIDQHDYSVRLKAARKFLKDGDKVKVIVNL 224
           YRYEQQKKKR QQKKSAA+RMDLKELKMGYNID HDYSVRLKAA+KFLKDGDKVKVIVNL
Sbjct: 137 YRYEQQKKKRDQQKKSAASRMDLKELKMGYNIDVHDYSVRLKAAQKFLKDGDKVKVIVNL 196

Query: 225 KGRENAFKNIAIELIRRFQEEIGELATEEAKNLRDRNMFIVLAPNKAVLQKAQEPPKVKD 284
           KGREN F+N AIELIRRFQ +IGELATEE KN RDRN+FIVL PNKAV QK+QEPPK KD
Sbjct: 197 KGRENEFRNNAIELIRRFQNDIGELATEENKNFRDRNIFIVLVPNKAVAQKSQEPPKKKD 256

Query: 285 NLVVNEVSASV 293
           N V NEVSASV
Sbjct: 257 NSVENEVSASV 267

The following BLAST results are available for this feature:

BLAST of CmaCh12G008500.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IF3_MICAN	4.0e-31	44.10	Translation initiation factor IF-3 OS=Microcystis aeruginosa (strain NIES-843) G...	[more]
IF3_CALS4	4.0e-31	45.34	Translation initiation factor IF-3 OS=Caldanaerobacter subterraneus subsp. tengc...	[more]
IF3_ANAVT	6.8e-31	46.01	Translation initiation factor IF-3 OS=Anabaena variabilis (strain ATCC 29413 / P...	[more]
IF3_NOSS1	6.8e-31	46.01	Translation initiation factor IF-3 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) G...	[more]
IF3_NOSP7	2.0e-30	46.01	Translation initiation factor IF-3 OS=Nostoc punctiforme (strain ATCC 29133 / PC...	[more]

BLAST of CmaCh12G008500.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH34_CUCSA	1.0e-110	75.59	Translation initiation factor IF-3 OS=Cucumis sativus GN=Csa_2G036070 PE=3 SV=1	[more]
B9T4Q8_RICCO	1.1e-85	63.39	Translation initiation factor IF-3 OS=Ricinus communis GN=RCOM_0443750 PE=3 SV=1	[more]
A0A061GWG8_THECC	1.8e-83	62.63	Translation initiation factor IF-3 OS=Theobroma cacao GN=TCM_038405 PE=3 SV=1	[more]
A0A061GNM3_THECC	4.5e-82	62.42	Translation initiation factor IF-3 OS=Theobroma cacao GN=TCM_038405 PE=3 SV=1	[more]
M5W2Z1_PRUPE	5.9e-82	64.39	Translation initiation factor IF-3 OS=Prunus persica GN=PRUPE_ppa009761mg PE=3 S...	[more]

BLAST of CmaCh12G008500.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G24060.1	6.2e-75	70.28	Translation initiation factor 3 protein	[more]
AT4G30690.1	9.0e-74	55.07	Translation initiation factor 3 protein	[more]
AT1G34360.1	1.9e-07	31.51	translation initiation factor 3 (IF-3) family protein	[more]

BLAST of CmaCh12G008500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069971\|ref\|XP_008452687.1\|	1.1e-110	76.09	PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis melo]	[more]
gi\|449453964\|ref\|XP_004144726.1\|	1.5e-110	75.59	PREDICTED: translation initiation factor IF-3, chloroplastic [Cucumis sativus]	[more]
gi\|255585038\|ref\|XP_002533227.1\|	1.6e-85	63.39	PREDICTED: translation initiation factor IF-3 [Ricinus communis]	[more]
gi\|1009109779\|ref\|XP_015892083.1\|	1.1e-84	69.70	PREDICTED: translation initiation factor IF-3-like [Ziziphus jujuba]	[more]
gi\|747065489\|ref\|XP_011079383.1\|	5.3e-84	70.92	PREDICTED: translation initiation factor IF-3, chloroplastic [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001288	Translation_initiation_fac_3
IPR019813	Translation_initiation_fac3_CS
IPR019814	Translation_initiation_fac_3_N
IPR019815	Translation_initiation_fac_3_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003743	translation initiation factor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006413	translational initiation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
biological_process	GO:0006446	regulation of translational initiation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003743	translation initiation factor activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh12G008500	CmaCh12G008500	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh12G008500.1	CmaCh12G008500.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G008500.1.exon.9	CmaCh12G008500.1.exon.9	exon
CmaCh12G008500.1.exon.8	CmaCh12G008500.1.exon.8	exon
CmaCh12G008500.1.exon.7	CmaCh12G008500.1.exon.7	exon
CmaCh12G008500.1.exon.6	CmaCh12G008500.1.exon.6	exon
CmaCh12G008500.1.exon.5	CmaCh12G008500.1.exon.5	exon
CmaCh12G008500.1.exon.4	CmaCh12G008500.1.exon.4	exon
CmaCh12G008500.1.exon.3	CmaCh12G008500.1.exon.3	exon
CmaCh12G008500.1.exon.2	CmaCh12G008500.1.exon.2	exon
CmaCh12G008500.1.exon.1	CmaCh12G008500.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G008500.1.five_prime_UTR.1	CmaCh12G008500.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G008500.1.CDS.1	CmaCh12G008500.1.CDS.1	CDS
CmaCh12G008500.1.CDS.2	CmaCh12G008500.1.CDS.2	CDS
CmaCh12G008500.1.CDS.3	CmaCh12G008500.1.CDS.3	CDS
CmaCh12G008500.1.CDS.4	CmaCh12G008500.1.CDS.4	CDS
CmaCh12G008500.1.CDS.5	CmaCh12G008500.1.CDS.5	CDS
CmaCh12G008500.1.CDS.6	CmaCh12G008500.1.CDS.6	CDS
CmaCh12G008500.1.CDS.7	CmaCh12G008500.1.CDS.7	CDS
CmaCh12G008500.1.CDS.8	CmaCh12G008500.1.CDS.8	CDS
CmaCh12G008500.1.CDS.9	CmaCh12G008500.1.CDS.9	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh12G008500.1.three_prime_UTR.1	CmaCh12G008500.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001288	Translation initiation factor 3	HAMAP	MF_00080	IF_3	coord: 94..268 score: 23
IPR001288	Translation initiation factor 3	PANTHER	PTHR10938	TRANSLATION INITIATION FACTOR IF-3	coord: 104..275 score: 5.4
IPR001288	Translation initiation factor 3	TIGRFAMs	TIGR00168	TIGR00168	coord: 107..267 score: 3.9
IPR019813	Translation initiation factor 3, conserved site	PROSITE	PS00938	IF3	coord: 155..168 scor
IPR019814	Translation initiation factor 3, N-terminal	GENE3D	G3DSA:3.10.20.80		coord: 107..175 score: 4.0
IPR019814	Translation initiation factor 3, N-terminal	PFAM	PF05198	IF3_N	coord: 107..171 score: 1.2
IPR019814	Translation initiation factor 3, N-terminal	unknown	SSF54364	Translation initiation factor IF3, N-terminal domain	coord: 107..175 score: 1.01
IPR019815	Translation initiation factor 3, C-terminal	GENE3D	G3DSA:3.30.110.10		coord: 181..267 score: 1.2
IPR019815	Translation initiation factor 3, C-terminal	PFAM	PF00707	IF3_C	coord: 183..266 score: 1.8
IPR019815	Translation initiation factor 3, C-terminal	unknown	SSF55200	Translation initiation factor IF3, C-terminal domain	coord: 182..267 score: 2.35
None	No IPR available	PANTHER	PTHR10938:SF0	TRANSLATION INITIATION FACTOR IF-3, MITOCHONDRIAL	coord: 104..275 score: 5.4